Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TreR regulog to Pediococcus pentosaceus ATCC 25745

Reference regulog properties
Source regulog: TreR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Pediococcus pentosaceus ATCC 25745
Orthologous TF(s) PEPE_1805
Regulated genes 2
Built upon 21 sites [see more]
Predicted regulatory interactions in Pediococcus pentosaceus ATCC 25745
Locus tag Position Score Sequence
Position: -171
Score: 5.8
Sequence: TAACTAGTATATACAAGGTA
Position: -95
Score: 6.1
Sequence: CATCTTGTATATACAAGTTT
Locus tag: PEPE_1804
PEPE_1804 -171 5.8 TAACTAGTATATACAAGGTA
-95 6.1 CATCTTGTATATACAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA1012 -146 5.4 ATAAATGTATAGACAAGTAA
-68 6.5 CAACTTGTATATACAAGTTT
Lactobacillus casei ATCC 334 LSEI_0631 -61 5.2 ATACCTGTACGTACAGGTAA
Lactobacillus johnsonii NCC 533 LJ0760 -164 5.2 ACACTTGATTAGACAAGTAA
-75 6.1 CAACTTGTACAGACAAGTAT
Lactobacillus plantarum WCFS1 lp_0264 -59 5.6 CAACTTGTCTAAACAAGTCT
Lactobacillus rhamnosus GG LGG_00603 -61 5.6 ATACCTGTACGTACAAGTAG
Lactobacillus sakei subsp. sakei 23K LSA1200 -78 6 CAACTTGTCTATACATGTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1512 -158 4.8 ATAGATGTATATACAATATA
-68 6.3 CAACTTGTATATACAAGTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0507 -40 5.8 TAACTAGTACGTACAAGTTG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0508 -40 5.8 TAACTAGTACGTACAAGTTG
Oenococcus oeni PSU-1 OEOE_1342 -31 5.5 AAAGTTGTACGTACAAGTGA
Oenococcus oeni PSU-1 OEOE_1341 -31 5.5 AAAGTTGTACGTACAAGTGA
Pediococcus pentosaceus ATCC 25745 PEPE_1804 -171 5.8 TAACTAGTATATACAAGGTA
-95 6.1 CATCTTGTATATACAAGTTT
Position: -142
Score: 6.2
Sequence: AAACTTGTATATACAAGATG
Position: -66
Score: 5.7
Sequence: TACCTTGTATATACTAGTTA
Locus tag: PEPE_1805
PEPE_1805 -142 6.2 AAACTTGTATATACAAGATG
-66 5.7 TACCTTGTATATACTAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -134 6.6 AAACTTGTATATACAAGTTG
-56 5.2 TTACTTGTCTATACATTTAT
Lactobacillus casei ATCC 334 LSEI_0629 -61 5.2 ATACCTGTACGTACAGGTAA
Lactobacillus johnsonii NCC 533 LJ0759 39 5.9 ATACTTGTCTGTACAAGTTG
Lactobacillus plantarum WCFS1 lp_0262 -59 5.6 CAACTTGTCTAAACAAGTCT
Lactobacillus rhamnosus GG LGG_00601 -61 5.6 ATACCTGTACGTACAAGTAG
Lactobacillus sakei subsp. sakei 23K LSA1201 -113 6.1 CAACATGTATAGACAAGTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -162 6.3 TCACTTGTATATACAAGTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -142 6.2 AAACTTGTATATACAAGATG
-66 5.7 TACCTTGTATATACTAGTTA
© 2009-2020 RegPrecise