Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RbsR regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: RbsR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) LVIS_1422
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -50
Score: 6.5
Sequence: TACGTAAAACGTTTTACAAA
Locus tag: LVIS_1421
LVIS_1421 -50 6.5 TACGTAAAACGTTTTACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus brevis ATCC 367 LVIS_1421 -50 6.5 TACGTAAAACGTTTTACAAA
Lactobacillus reuteri JCM 1112 LAR_1218 -35 4.7 TAGATAAAACTGTTTACTAA
Oenococcus oeni PSU-1 OEOE_1612 25 6.4 TTAGTAAAGCGTTTTACTTA
Position: -48
Score: 5.2
Sequence: GATGTAAAACGTTTTACGAT
Locus tag: LVIS_1588
LVIS_1588 -48 5.2 GATGTAAAACGTTTTACGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsP
Ortholog function: Predicted ribose permease
Lactobacillus brevis ATCC 367 LVIS_1588 -48 5.2 GATGTAAAACGTTTTACGAT
Lactobacillus fermentum IFO 3956 LAF_1736 -59 6.2 TACGTAAAAGGTTTTAACAA
Oenococcus oeni PSU-1 OEOE_1614 25 6.4 TTAGTAAAGCGTTTTACTTA
Position: -125
Score: 5
Sequence: TAAGTAAATCGATTTACGCA
Locus tag: LVIS_1589
LVIS_1589 -125 5 TAAGTAAATCGATTTACGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsD
Ortholog function: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Lactobacillus brevis ATCC 367 LVIS_1589 -125 5 TAAGTAAATCGATTTACGCA
Lactobacillus casei ATCC 334 LSEI_0307 -45 6.7 TAAGTAAAACGTTTTACCTA
Lactobacillus fermentum IFO 3956 LAF_1737 -59 6.2 TACGTAAAAGGTTTTAACAA
Lactobacillus plantarum WCFS1 lp_3659 -74 6.2 TTATTAAAACGTTTTCATAA
-61 6.1 TTCATAAAACGTTTTAATAA
Lactobacillus sakei subsp. sakei 23K LSA0201 -49 6.9 TTAGTAAAACGTTTTACTAA
Oenococcus oeni PSU-1 OEOE_1613 25 6.4 TTAGTAAAGCGTTTTACTTA
Pediococcus pentosaceus ATCC 25745 PEPE_1698 -67 5.6 CTATTAAAACGTTTTCATAA
-54 5.3 TTCATAAAACGTTTTAAACA
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