Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: Rex - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_0324
Regulated genes 5
Built upon 68 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -151
Score: 4.9
Sequence: TTGAAATTTAATTCACAA
Locus tag: LAF_0277
LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -45 5.5 TTGTAAATTAGTTCACAA
Lactobacillus brevis ATCC 367 LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Lactobacillus casei ATCC 334 LSEI_0775 -106 5 TCGTGAAAAAATTCACCA
-85 4.7 TTGTTTACAAAATCACAA
-49 5.4 TTGTGAAATGGTTAACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1581 -47 5.2 TTGAGAAATTGATCACAA
Lactobacillus fermentum IFO 3956 LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
-85 4.5 TTGTTGACTAAATCACAA
Lactobacillus johnsonii NCC 533 LJ1766 -289 4.8 TTATTAAAATTTTAACAT
-191 5.3 TTGTGAAATATTTTTCAA
-104 5 TTGTAAAAAGATGCACAA
Lactobacillus plantarum WCFS1 lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Lactobacillus reuteri JCM 1112 LAR_0310 -238 4.4 TTGTGAAATAGACTTCAA
-104 5.1 TTGTTTAAATGTTCACAA
Lactobacillus rhamnosus GG LGG_00757 -105 5.2 TCGTGAAAAAGTTCACTA
-84 4.7 TTGTTTACAAAATCACAA
-48 5.4 TTGTGAAATGGTTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
Position: -39
Score: 5
Sequence: TTGTTAAAACATACACAA
Locus tag: LAF_0639
LAF_0639 -39 5 TTGTTAAAACATACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gldA
Ortholog function: Glycerol dehydrogenase (EC 1.1.1.6)
Lactobacillus brevis ATCC 367 LVIS_2165 -37 5.3 TTGTGAAAATAATCACGA
Lactobacillus fermentum IFO 3956 LAF_0639 -39 5 TTGTTAAAACATACACAA
Lactobacillus reuteri JCM 1112 LAR_1724 -38 4.8 TTGTTAACTTATACACAA
Position: -89
Score: 5.2
Sequence: ATGTTAAAAAGTTAACAA
Locus tag: LAF_1372
LAF_1372 -89 5.2 ATGTTAAAAAGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Lactobacillus fermentum IFO 3956 LAF_1372 -201 4.5 TTGTAGAAAAATTCACCA
-89 5.2 ATGTTAAAAAGTTAACAA
Position: -78
Score: 4.2
Sequence: TTGTGAAGTCTGTTACAA
Locus tag: LAF_1480
LAF_1480 -78 4.2 TTGTGAAGTCTGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: butA
Ortholog function: 2,3-butanediol dehydrogenase, S-alcohol forming, (R)-acetoin-specific (EC 1.1.1.4)
Lactobacillus fermentum IFO 3956 LAF_1480 -78 4.2 TTGTGAAGTCTGTTACAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0145 -17 4.4 TTGTGAGGAAAAAAACAA
Oenococcus oeni PSU-1 OEOE_0693 -48 5.3 TTGTGATTTATTTTACAA
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