Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Lactobacillus sakei subsp. sakei 23K

Reference regulog properties
Source regulog: LexA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus sakei subsp. sakei 23K
Orthologous TF(s) LSA1275
Regulated genes 6
Built upon 99 sites [see more]
Predicted regulatory interactions in Lactobacillus sakei subsp. sakei 23K
Locus tag Position Score Sequence
Position: -94
Score: 4.9
Sequence: AAGAACGTTTGTTCGA
Locus tag: LSA0487
LSA0487 -94 4.9 AAGAACGTTTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: DNA recombinase A
Lactobacillus acidophilus NCFM LBA0666 -82 4.2 TTGAACATTAGTTTGT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0535 -84 4.1 TTGAACGTTAGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0511 -89 3.9 CCGAACCCCTGTTCGA
Lactobacillus helveticus DPC 4571 lhv_0713 -82 4.1 TTGAACGTTAGTTTGT
Lactobacillus plantarum WCFS1 lp_2301 -90 4.8 ACGAACTTTTGTTCGC
Lactobacillus reuteri JCM 1112 LAR_0509 -89 4.3 ACGAACTTTTGTTCAC
Lactobacillus sakei subsp. sakei 23K LSA0487 -94 4.9 AAGAACGTTTGTTCGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0584 -82 5.2 ACGAACAAATGTTCGA
Oenococcus oeni PSU-1 OEOE_1382 -57 5.2 ACGAACAAATGTTCGT
Pediococcus pentosaceus ATCC 25745 PEPE_1276 -84 4.8 TCGAACTTTTGTTCGC
Position: -190
Score: 4.9
Sequence: GCGAAAATACGTTCGG
Locus tag: LSA0523
LSA0523 -190 4.9 GCGAAAATACGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC, subunit B
Lactobacillus acidophilus NCFM LBA0688 -87 4.6 GCGAAAACACGTTCGT
Lactobacillus brevis ATCC 367 LVIS_0648 -101 4.9 GCGAAAGTATGTTCGG
Lactobacillus casei ATCC 334 LSEI_0956 -206 5 GCGAAAGTATGTTCGC
-127 4.2 ACGAAATTTTGTTTGG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0549 -64 4.1 TAGAATCTATGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0353 -99 4.7 ACGAATAAACGTTCGT
Lactobacillus helveticus DPC 4571 lhv_0729 -86 4.6 GCGAAAACACGTTCGT
Lactobacillus johnsonii NCC 533 LJ0863 -86 5 GCGAAAATACGTTCGC
Lactobacillus plantarum WCFS1 lp_0772 -146 5 GCGAAAGTATGTTCGA
Lactobacillus reuteri JCM 1112 LAR_0372 -132 4.4 ACGAATACATGTTTGG
Lactobacillus rhamnosus GG LGG_00923 -271 5 GCGAAAGTATGTTCGC
Lactobacillus sakei subsp. sakei 23K LSA0523 -190 4.9 GCGAAAATACGTTCGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0392 -89 4.9 TAGAACGTTTGTTCGT
Oenococcus oeni PSU-1 OEOE_0372 -50 4.2 GGGAACTAATGTTCGC
Pediococcus pentosaceus ATCC 25745 PEPE_0448 -127 4.9 GCGAAAGTATGTTCGG
Position: -56
Score: 4.9
Sequence: TAGAACGTTTGTTCGT
Position: -29
Score: 5
Sequence: ACAAACAAATGTTCGG
Locus tag: LSA0683
LSA0683 -56 4.9 TAGAACGTTTGTTCGT
-29 5 ACAAACAAATGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: LJ1544
Ortholog function: hypothetical protein
Lactobacillus casei ATCC 334 LSEI_1631 -53 4.3 TTGAACACTTGTTCGT
-26 5 ACAAACAAATGTTCGG
Lactobacillus rhamnosus GG LGG_01676 -53 4.5 TTGAACACATGTTCGT
-26 4.9 ACAAACAAACGTTCGG
Lactobacillus sakei subsp. sakei 23K LSA0683 -56 4.9 TAGAACGTTTGTTCGT
-29 5 ACAAACAAATGTTCGG
Position: -113
Score: 4.7
Sequence: GCGAACATACATTTGG
Locus tag: LSA0976
LSA0976 -113 4.7 GCGAACATACATTTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Lactobacillus brevis ATCC 367 LVIS_0804 -70 4.7 TTGAACATACGTTCGG
Lactobacillus plantarum WCFS1 lp_1840 -185 4.9 GCGAACGTGTGTTTGC
Lactobacillus reuteri JCM 1112 LAR_0752 -45 4.6 TCGAACATACGTTTAG
Lactobacillus rhamnosus GG LGG_01419 -179 4.5 ACGAACACACATTCGA
Lactobacillus sakei subsp. sakei 23K LSA0976 -113 4.7 GCGAACATACATTTGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1364 -36 4.3 ACGAACACTGGTTCGT
Oenococcus oeni PSU-1 OEOE_1026 -8 4.8 ACGAATGAATGTTCGC
Position: -35
Score: 4.4
Sequence: ACGAACACTTGTTTTG
Position: 16
Score: 4
Sequence: TCGAACATAAATTAGC
Locus tag: LSA1055
LSA1055 -35 4.4 ACGAACACTTGTTTTG
16 4 TCGAACATAAATTAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Nuclease subunit of the excinuclease complex
Lactobacillus brevis ATCC 367 LVIS_1383 -64 4.4 CCAAACAAACATTCGG
Lactobacillus casei ATCC 334 LSEI_1346 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus rhamnosus GG LGG_01358 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus sakei subsp. sakei 23K LSA1055 -35 4.4 ACGAACACTTGTTTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1135 16 3.9 TTGAACATAAGTTGGC
Position: -70
Score: 4.7
Sequence: ACGAACACTTGTTTGA
Locus tag: LSA1275
LSA1275 -70 4.7 ACGAACACTTGTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
Lactobacillus acidophilus NCFM LBA1280 -80 4.1 AAGAACGCCTGTTTGA
Lactobacillus casei ATCC 334 LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Lactobacillus casei ATCC 334 LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1265 -85 4.1 TAGAACGCCCGTTTGC
Lactobacillus fermentum IFO 3956 LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Lactobacillus helveticus DPC 4571 lhv_1364 -82 4.8 TAGAACATTCGTTTGA
Lactobacillus johnsonii NCC 533 LJ1508 -71 4.1 AAGAACGCCTGTTTGC
Lactobacillus plantarum WCFS1 lp_2063 -81 5 CCGAACATTTGTTTGA
Lactobacillus reuteri JCM 1112 LAR_0650 -71 5.2 GCGAACGTACGTTTGA
Lactobacillus rhamnosus GG LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Lactobacillus sakei subsp. sakei 23K LSA1275 -70 4.7 ACGAACACTTGTTTGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0540 -74 4.6 ACGAACGTTAGTTTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1204 -75 5 ACGAACAAACGTTTGA
Oenococcus oeni PSU-1 OEOE_0970 -76 4.9 ACGAACATGTGTTTGT
Pediococcus pentosaceus ATCC 25745 PEPE_0870 -68 5.1 GCGAACATTTGTTTGA
© 2009-2020 RegPrecise