Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Pediococcus pentosaceus ATCC 25745

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Pediococcus pentosaceus ATCC 25745
Orthologous TF(s) PEPE_0671, PEPE_0822
Regulated genes 4
Built upon 27 sites [see more]
Predicted regulatory interactions in Pediococcus pentosaceus ATCC 25745
Locus tag Position Score Sequence
Position: 11
Score: 4.5
Sequence: AGAGGATATTAATAAAAT
Position: 17
Score: 3.7
Sequence: TATTAATAAAATTTTAGT
Locus tag: PEPE_0316
PEPE_0316 11 4.5 AGAGGATATTAATAAAAT
17 3.7 TATTAATAAAATTTTAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: carB
Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)
Lactobacillus fermentum IFO 3956 LAF_0728 -120 3.3 CGTTCATAAATAACCAAT
Lactobacillus plantarum WCFS1 lp_0526 -169 4.9 ATTGAAAAAATATTCATT
Lactobacillus reuteri JCM 1112 LAR_0080 -261 4.7 TTTGCATAAAAATTCATT
-136 3.6 CATACATATATATTCAAT
Position: 10
Score: 3.2
Sequence: AAATCATCAAAATTGAAA
Position: 20
Score: 2.9
Sequence: AATTGAAAATTTGACCAA
Locus tag: PEPE_1136
PEPE_1136 10 3.2 AAATCATCAAAATTGAAA
20 2.9 AATTGAAAATTTGACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
Position: -139
Score: 3.7
Sequence: AGAAAATAAAAATTATTC
Position: -136
Score: 4.2
Sequence: AAATAAAAATTATTCATA
Position: -94
Score: 5.2
Sequence: AATGTATAAAAATTCATA
Position: 0
Score: 3.7
Sequence: ATGAAAAAAATATATAAA
Position: 8
Score: 4
Sequence: AATATATAAATTTATCAT
Locus tag: PEPE_1137
PEPE_1137 -139 3.7 AGAAAATAAAAATTATTC
-136 4.2 AAATAAAAATTATTCATA
-94 5.2 AATGTATAAAAATTCATA
0 3.7 ATGAAAAAAATATATAAA
8 4 AATATATAAATTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
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