Propagation of ArgR regulog to Pediococcus pentosaceus ATCC 25745
| Source regulog: | ArgR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor, activator |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Pediococcus pentosaceus ATCC 25745 |
| Orthologous TF(s) | PEPE_0671, PEPE_0822 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: 11
Score: 4.5 Sequence: AGAGGATATTAATAAAAT
Position: 17
Score: 3.7 Sequence: TATTAATAAAATTTTAGT
Locus tag: PEPE_0316
|
||||
| PEPE_0316 | 11 | 4.5 | AGAGGATATTAATAAAAT | |
| 17 | 3.7 | TATTAATAAAATTTTAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carB | ||||
| Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0728 | -120 | 3.3 | CGTTCATAAATAACCAAT |
| Lactobacillus plantarum WCFS1 | lp_0526 | -169 | 4.9 | ATTGAAAAAATATTCATT |
| Lactobacillus reuteri JCM 1112 | LAR_0080 | -261 | 4.7 | TTTGCATAAAAATTCATT |
| -136 | 3.6 | CATACATATATATTCAAT | ||
|
Position: 10
Score: 3.2 Sequence: AAATCATCAAAATTGAAA
Position: 20
Score: 2.9 Sequence: AATTGAAAATTTGACCAA
Locus tag: PEPE_1136
|
||||
| PEPE_1136 | 10 | 3.2 | AAATCATCAAAATTGAAA | |
| 20 | 2.9 | AATTGAAAATTTGACCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artM | ||||
| Ortholog function: Arginine ABC transporter, ATP-binding protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1201 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_1345 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus fermentum IFO 3956 | LAF_0624 | -63 | 3.6 | CTTGCATAATAATTCGTT |
| Lactobacillus plantarum WCFS1 | lp_2110 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0697 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_01357 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1056 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1540 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0629 | -59 | 3 | GATGCATATAAATTATAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1136 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: -139
Score: 3.7 Sequence: AGAAAATAAAAATTATTC
Position: -136
Score: 4.2 Sequence: AAATAAAAATTATTCATA
Position: -94
Score: 5.2 Sequence: AATGTATAAAAATTCATA
Position: 0
Score: 3.7 Sequence: ATGAAAAAAATATATAAA
Position: 8
Score: 4 Sequence: AATATATAAATTTATCAT
Locus tag: PEPE_1137
|
||||
| PEPE_1137 | -139 | 3.7 | AGAAAATAAAAATTATTC | |
| -136 | 4.2 | AAATAAAAATTATTCATA | ||
| -94 | 5.2 | AATGTATAAAAATTCATA | ||
| 0 | 3.7 | ATGAAAAAAATATATAAA | ||
| 8 | 4 | AATATATAAATTTATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artPQ | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding and permease protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1200 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus casei ATCC 334 | LSEI_1344 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus plantarum WCFS1 | lp_2111 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0698 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_02816 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus rhamnosus GG | LGG_01356 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1057 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1541 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0655 | -62 | 5.3 | ATTGTATAAAAATTCAAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1137 | -94 | 5.2 | AATGTATAAAAATTCATA |