Propagation of PurR regulog to Lactobacillus plantarum JDM1
| Source regulog: | PurR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | PurR |
| Regulation mode: | repressor |
| Biological process: | Purine metabolism |
| Effector: | 5-phosphoribosyl 1-pyrophosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus plantarum JDM1 |
| Orthologous TF(s) | JDM1_0394 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: 12
Score: 4.3 Sequence: AGAAGCGAACGTT
Locus tag: JDM1_0394
|
||||
| JDM1_0394 | 12 | 4.3 | AGAAGCGAACGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purR | ||||
| Ortholog function: Purine metabolism transcriptional regulator PurR, PurR family | ||||
| Lactobacillus acidophilus NCFM | LBA0218 | -27 | 4.8 | AAAACCAAACATT |
| Lactobacillus brevis ATCC 367 | LVIS_0474 | -91 | 5.3 | AAACCCGAACAAT |
| Lactobacillus casei ATCC 334 | LSEI_2587 | -126 | 4.8 | AAATGCGAACGTT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0302 | -54 | 4.3 | AAAAACAGACATT |
| Lactobacillus fermentum IFO 3956 | LAF_0194 | -98 | 5.2 | AAAGACGAACAAT |
| Lactobacillus helveticus DPC 4571 | lhv_0234 | -27 | 4.1 | AAAGCCAAACGTT |
| Lactobacillus johnsonii NCC 533 | LJ0207 | -105 | 4.1 | TATTACGAACAAT |
| Lactobacillus plantarum WCFS1 | lp_0466 | 12 | 4.3 | AGAAGCGAACGTT |
| Lactobacillus reuteri JCM 1112 | LAR_0210 | -64 | 5.2 | AAATCCGAACATT |
| Lactobacillus rhamnosus GG | LGG_02564 | -126 | 4.8 | AAATGCGAACGTT |
| Lactobacillus sakei subsp. sakei 23K | LSA1651 | -120 | 5.6 | AAAAACGAACAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0315 | -116 | 5.4 | AAAAACGAACTTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0292 | -103 | 5.2 | AAATCCGAACATT |
|
Position: -57
Score: 5.3 Sequence: AAACACGAACGTT
Locus tag: JDM1_0706
|
||||
| JDM1_0706 | -57 | 5.3 | AAACACGAACGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pbuG | ||||
| Ortholog function: Guanine/hypoxanthine permease | ||||
| Lactobacillus brevis ATCC 367 | LVIS_2274 | -66 | 5.6 | AAACACGAACAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1806 | -67 | 4.3 | AAAGCCGAATATT |
| Lactobacillus plantarum WCFS1 | lp_0848 | -57 | 5.3 | AAACACGAACGTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0303 | -122 | 5.2 | AAATACGAACTAT |
|
Position: 28
Score: 3.4 Sequence: ATAAGCAATCAAT
Locus tag: JDM1_2185
|
||||
| JDM1_2185 | 28 | 3.4 | ATAAGCAATCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purS | ||||
| Ortholog function: Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) | ||||
| Lactobacillus acidophilus NCFM | LBA1558 | -151 | 5.3 | AAACACGAACGAT |
| Lactobacillus casei ATCC 334 | LSEI_1753 | -107 | 5.3 | AAACACGAACGAT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1337 | -60 | 3.4 | AATTACGAATAGT |
| Lactobacillus fermentum IFO 3956 | LAF_0125 | -155 | 5.6 | AAACACGAACATT |
| Lactobacillus plantarum WCFS1 | lp_2726 | -104 | 5 | TAACACGAACATT |
| Lactobacillus reuteri JCM 1112 | LAR_0132 | -153 | 5.6 | AAACACGAACAAT |
| Lactobacillus rhamnosus GG | LGG_01811 | -108 | 5.5 | AAATACGAACATT |
| -96 | 4.3 | TAAAACGAATAAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0656 | -110 | 4.9 | ATAAACGAACTTT |
| -58 | 5.6 | AAAAACGAACAAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0664 | -27 | 5.2 | AAAGACGAACAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0721 | -137 | 4.1 | ATATACGAACTCT |
| Oenococcus oeni PSU-1 | OEOE_1135 | -130 | 4.6 | AAACACGAAATAT |
| -79 | 5.3 | AAAAACGAACGTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1464 | -123 | 5.4 | AAAAACGAACTTT |
|
Position: 16
Score: 3.3 Sequence: AGAAACAAGCTTT
Locus tag: JDM1_2186
|
||||
| JDM1_2186 | 16 | 3.3 | AGAAACAAGCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purC | ||||
| Ortholog function: Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) | ||||
| Lactobacillus acidophilus NCFM | LBA1559 | -151 | 5.3 | AAACACGAACGAT |
| Lactobacillus casei ATCC 334 | LSEI_1754 | -107 | 5.3 | AAACACGAACGAT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1338 | -60 | 3.4 | AATTACGAATAGT |
| Lactobacillus fermentum IFO 3956 | LAF_0124 | -155 | 5.6 | AAACACGAACATT |
| Lactobacillus plantarum WCFS1 | lp_2727 | -104 | 5 | TAACACGAACATT |
| Lactobacillus reuteri JCM 1112 | LAR_0131 | -153 | 5.6 | AAACACGAACAAT |
| Lactobacillus rhamnosus GG | LGG_01812 | -108 | 5.5 | AAATACGAACATT |
| -96 | 4.3 | TAAAACGAATAAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0655 | -110 | 4.9 | ATAAACGAACTTT |
| -58 | 5.6 | AAAAACGAACAAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0663 | -27 | 5.2 | AAAGACGAACAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0720 | -137 | 4.1 | ATATACGAACTCT |
| Oenococcus oeni PSU-1 | OEOE_1136 | -130 | 4.6 | AAACACGAAATAT |
| -79 | 5.3 | AAAAACGAACGTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1465 | -123 | 5.4 | AAAAACGAACTTT |
|
Position: -104
Score: 5 Sequence: TAACACGAACATT
Locus tag: JDM1_2188
|
||||
| JDM1_2188 | -104 | 5 | TAACACGAACATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purE | ||||
| Ortholog function: Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) | ||||
| Lactobacillus acidophilus NCFM | LBA1561 | -59 | 4.4 | ATATAAGAACAAT |
| Lactobacillus casei ATCC 334 | LSEI_1756 | -107 | 5.3 | AAACACGAACGAT |
| Lactobacillus fermentum IFO 3956 | LAF_0118 | -106 | 5.2 | AAATCCGAACAAT |
| Lactobacillus helveticus DPC 4571 | lhv_1534 | -73 | 4.1 | AAATACAAACAAA |
| Lactobacillus plantarum WCFS1 | lp_2729 | -104 | 5 | TAACACGAACATT |
| Lactobacillus reuteri JCM 1112 | LAR_0128 | -102 | 4.9 | ATACACGAACTAT |
| Lactobacillus rhamnosus GG | LGG_01814 | -108 | 5.5 | AAATACGAACATT |
| -96 | 4.3 | TAAAACGAATAAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0652 | -112 | 4.3 | TAACACGTACAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0515 | -68 | 4.1 | AAATTCGAATTTT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0718 | -137 | 4.1 | ATATACGAACTCT |
| Oenococcus oeni PSU-1 | OEOE_1138 | -130 | 4.6 | AAACACGAAATAT |
| -79 | 5.3 | AAAAACGAACGTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1467 | -123 | 5.4 | AAAAACGAACTTT |
|
Position: -201
Score: 4.3 Sequence: AAAACCGAATGTT
Locus tag: JDM1_2623
|
||||
| JDM1_2623 | -201 | 4.3 | AAAACCGAATGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purB | ||||
| Ortholog function: Adenylosuccinate lyase (EC 4.3.2.2) | ||||
| Lactobacillus acidophilus NCFM | LBA1891 | -123 | 4.9 | AAAATCGAACTAT |
| Lactobacillus brevis ATCC 367 | LVIS_0228 | -190 | 5 | AAAAGCGAACTAT |
| Lactobacillus fermentum IFO 3956 | LAF_0120 | -106 | 5.2 | AAATCCGAACAAT |
| Lactobacillus helveticus DPC 4571 | lhv_2029 | -134 | 4.9 | AAAATCGAACTAT |
| Lactobacillus johnsonii NCC 533 | LJ0443 | -120 | 4.3 | AAAAATGAATATT |
| Lactobacillus plantarum WCFS1 | lp_3269 | -201 | 4.3 | AAAACCGAATGTT |
| Lactobacillus reuteri JCM 1112 | LAR_0130 | -102 | 4.9 | ATACACGAACTAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0654 | -112 | 4.3 | TAACACGTACAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0517 | -68 | 4.1 | AAATTCGAATTTT |
|
Position: -280
Score: 5.3 Sequence: AAACACGAACGTT
Position: -239
Score: 4.5 Sequence: AGAGACGAACAAT
Position: -135
Score: 5.1 Sequence: AAACAAGAACATT
Locus tag: JDM1_2624
|
||||
| JDM1_2624 | -280 | 5.3 | AAACACGAACGTT | |
| -239 | 4.5 | AGAGACGAACAAT | ||
| -135 | 5.1 | AAACAAGAACATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purA | ||||
| Ortholog function: Adenylosuccinate synthetase (EC 6.3.4.4) | ||||
| Lactobacillus acidophilus NCFM | LBA1892 | -123 | 4.9 | AAAATCGAACTAT |
| Lactobacillus brevis ATCC 367 | LVIS_0227 | -247 | 5.3 | AAAAGCGAACATT |
| Lactobacillus fermentum IFO 3956 | LAF_0044 | -123 | 5.3 | AAAACCGAACAAT |
| Lactobacillus helveticus DPC 4571 | lhv_2030 | -134 | 4.9 | AAAATCGAACTAT |
| Lactobacillus johnsonii NCC 533 | LJ0442 | -120 | 4.3 | AAAAATGAATATT |
| Lactobacillus plantarum WCFS1 | lp_3270 | -280 | 5.6 | AAACACGAACATT |
| -239 | 4.5 | AGAGACGAACAAT | ||
| -135 | 5.1 | AAACAAGAACATT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1460 | -132 | 4.2 | AAAAAGCAACATT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1247 | -117 | 5.1 | AAACACGAACCAT |