Regulog IolR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Inositol utilization |
| Effector: | 2-deoxy-5-keto-D-gluconate 6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - DeoR
- By effector - 2-deoxy-5-keto-D-gluconate 6-phosphate
- By pathway - Inositol utilization
| Genome | Genes | Operons |
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| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | 10 | 2 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| iolR |
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Lactobacillus rhamnosus GG Site: position = -83 score = -0.421188 sequence = AAACATGGTCA-(0)-TAATATGTCCA Gene: LGG_00260: Myo-inositol catabolism transcriptional regulator IolR, DeoR family |
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Myo-inositol catabolism transcriptional regulator IolR, DeoR family |
| CRON 2. | ||||||||||||||||
| iolT |
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Gene: lp_3604: Myo-inositol transport protein IolT |
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Lactobacillus rhamnosus GG Site: position = -136 score = 8.48815 sequence = TGAACATCTAA-(0)-TGATTAAATTA Gene: LGG_00261: Myo-inositol transport protein IolT |
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Myo-inositol transport protein IolT |
| iolA |
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Gene: LGG_00262: Methylmalonate semialdehyde acylating dehydrogenase (EC 1.2.1.27) |
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Methylmalonate semialdehyde acylating dehydrogenase (EC 1.2.1.27) |
| iolB |
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Gene: LGG_00263: Myo-inositol catabolism isomerase protein IolB |
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Myo-inositol catabolism isomerase protein IolB |
| iolC |
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Gene: LGG_00264: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) |
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5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) |
| iolD |
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Gene: LGG_00265: Myo-inositol catabolism protein IolD |
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Myo-inositol catabolism protein IolD |
| iolG |
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Lactobacillus plantarum WCFS1 Gene: lp_3608: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Gene: lp_3606: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Gene: lp_3605: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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Lactobacillus rhamnosus GG Gene: LGG_00266: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Gene: LGG_00267: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| iolE |
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Gene: lp_3607: Inosose dehydratase (EC 4.2.1.44) |
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Gene: LGG_00268: Inosose dehydratase (EC 4.2.1.44) |
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Inosose dehydratase (EC 4.2.1.44) |
| iolJ |
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Gene: LGG_00269: 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase (EC 4.1.2.29) |
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6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase (EC 4.1.2.29) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |