Propagation of PerR regulog to Lactobacillus reuteri JCM 1112
| Source regulog: | PerR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Manganese homeostasis; Oxidative stress response; Iron homeostasis |
| Effector: | Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus reuteri JCM 1112 |
| Orthologous TF(s) | LAR_1528, LAR_1232 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -94
Score: 5.6 Sequence: TTAGAATTGTTCTAA
Position: -33
Score: 5.7 Sequence: TAAGAATGATTCTAA
Locus tag: LAR_1019
|
||||
| LAR_1019 | -94 | 5.6 | TTAGAATTGTTCTAA | |
| -33 | 5.7 | TAAGAATGATTCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ahpC | ||||
| Ortholog function: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0086 | -82 | 4.9 | TTAGAATCATTCTTG |
| Lactobacillus casei ATCC 334 | LSEI_2506 | -31 | 5.5 | TAATAATCATTCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0409 | -32 | 5 | TGATAATCGTTCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_1019 | -94 | 5.6 | TTAGAATTGTTCTAA |
| -33 | 5.7 | TAAGAATGATTCTAA | ||
|
Position: -107
Score: 5.4 Sequence: TTAAAATAATTATAA
Position: -31
Score: 5.6 Sequence: TAATAATTATTCTAA
Locus tag: LAR_1231
|
||||
| LAR_1231 | -107 | 5.4 | TTAAAATAATTATAA | |
| -31 | 5.6 | TAATAATTATTCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycnB | ||||
| Ortholog function: Predicted permease | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1917 | -39 | 5.2 | TAAGAATATTTCTAA |
| Lactobacillus casei ATCC 334 | LSEI_2416 | -192 | 5.3 | TTAGATTAATTCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_1361 | -109 | 5.3 | TTATAATCATTTTAA |
| -30 | 4.8 | TTATAAGTTTTCTAA | ||
| Lactobacillus reuteri JCM 1112 | LAR_1231 | -107 | 5.4 | TTAAAATAATTATAA |
| -31 | 5.6 | TAATAATTATTCTAA | ||
| Lactobacillus rhamnosus GG | LGG_02414 | -72 | 4.8 | TTAGATTAATTCCAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1578 | -64 | 4.6 | TTACAAAAATTCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0503 | -73 | 5.3 | TTAGATTAATTCTAA |
|
Position: -107
Score: 5.3 Sequence: TTAGAATAATTATTA
Position: -31
Score: 5.5 Sequence: TTATAATTATTTTAA
Locus tag: LAR_1232
|
||||
| LAR_1232 | -107 | 5.3 | TTAGAATAATTATTA | |
| -31 | 5.5 | TTATAATTATTTTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: perR | ||||
| Ortholog function: Peroxide stress response transcriptional regulator PerR, Fur family | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1882 | -186 | 5.5 | TTAGAATAATTCTTA |
| Lactobacillus fermentum IFO 3956 | LAF_1362 | -27 | 5.6 | TTAAAATGATTATAA |
| Lactobacillus plantarum WCFS1 | lp_3247 | -79 | 5 | TAGTAATGTTTCTAA |
| -63 | 4.8 | TTGGAATCCTTCTAA | ||
| Lactobacillus reuteri JCM 1112 | LAR_1232 | -107 | 5.3 | TTAGAATAATTATTA |
| -31 | 5.5 | TTATAATTATTTTAA | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0466 | -38 | 4.7 | TGATAATGATTATCA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1367 | -33 | 4.8 | TTATAAAAGTTATAA |
|
Position: -102
Score: 5.4 Sequence: TTTTAATGATTCTAA
Position: -38
Score: 6 Sequence: TTATAATGATTCTAA
Locus tag: LAR_1418
|
||||
| LAR_1418 | -102 | 5.4 | TTTTAATGATTCTAA | |
| -38 | 6 | TTATAATGATTCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pcl2 | ||||
| Ortholog function: Predicted membrane protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1881 | -98 | 5.6 | TAAGAATTATTCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_1546 | -103 | 5.3 | TTAGAATTCTTCTAA |
| -39 | 5.7 | TTATAATGGTTCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_3360 | -37 | 5.6 | TAATAATGATTATAA |
| Lactobacillus reuteri JCM 1112 | LAR_1418 | -102 | 5.4 | TTTTAATGATTCTAA |
| -38 | 6 | TTATAATGATTCTAA | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1194 | -43 | 5.6 | TTATAATGGTTATAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0409 | -38 | 5.5 | TTATAATTTTTCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0043 | -37 | 5.7 | TTAAAATGATTCTAA |