Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HrcA regulog to Lactobacillus casei BL23

Reference regulog properties
Source regulog: HrcA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei BL23
Orthologous TF(s) LCABL_17800
Regulated genes 6
Built upon 69 sites [see more]
Predicted regulatory interactions in Lactobacillus casei BL23
Locus tag Position Score Sequence
Position: -51
Score: 6.9
Sequence: TTAGCACTGTACTTTTAAGAGTGCTAA
Locus tag: LCABL_10770
LCABL_10770 -51 6.9 TTAGCACTGTACTTTTAAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpP
Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
Lactobacillus acidophilus NCFM LBA0694 -59 6.1 TTAGCACAGTACTTGTATGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_0963 -51 6.9 TTAGCACTGTACTTTTAAGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0360 -44 5.5 TTAGCAAACAGTACTAACTAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_0735 -60 6.6 TTAGCACAGTACTTAAAAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0869 -49 6.9 TTAGCACTGTACTTATTAGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0379 -47 5.8 TTAGCATATAAGACTAACGAGTGCTAA
Lactobacillus rhamnosus GG LGG_00931 -54 7 TTAGCACTGTACTTTAAAGAGTGCTAA
Position: -42
Score: 7.6
Sequence: TTAGCACTCATATAAAACGAGTGCTAA
Locus tag: LCABL_17800
LCABL_17800 -42 7.6 TTAGCACTCATATAAAACGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hrcA
Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family
Lactobacillus acidophilus NCFM LBA1249 -93 6.1 TTAGCACTCAGGTTGCATTATTGCTAA
-45 6.1 TTAGCACCTGATAGATGTGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1331 -127 6.1 TTAGCACTTAATTACGTTGATTGCTAA
-43 6.9 TTAGCACTTGTGTTGTTTGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_1567 -42 7.6 TTAGCACTCATATAAAACGAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1229 -92 5.7 TTAGCATTCTCCTTGACTAACTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0749 -33 6.4 TTAGCACTTAGATGGCCAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1481 -91 6.4 TTAGCACTCTACTTGAACAATTGCTAA
-43 6.3 TTAGCACAGAAGAAAGAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_2029 -191 7.1 TTAGCACTCGTAAGTAAGGAGTGCTAA
-36 6.7 TTAGCACTCCATTAAGTTAAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0677 -45 6.5 TTAGCACTTGACCCTAATGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01606 -42 7.6 TTAGCACTCGTGTAAAACGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA1238 -41 7 TTAGCACTCGTAATAATCAAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0576 -41 6.6 TTAGCACTCTAATGTGTTAAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1349 -110 7.4 TTGGCACTCTTATAAAAAGAGTGCTAA
-41 6.3 TTAGCAGTTAGATATAGTGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0894 -41 6.4 TTAGCACTCCAACTTTCTAAGTGCTAA
Position: -256
Score: 5.9
Sequence: TTAGCACTCTTAGTGGCAGAGTGCTTG
Locus tag: LCABL_19810
LCABL_19810 -256 5.9 TTAGCACTCTTAGTGGCAGAGTGCTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpL
Ortholog function: ATP-dependent Clp protease, ATP-binding subunit
Lactobacillus acidophilus NCFM LBA0638 -70 6.8 TTAGCACTTGACTACCAAGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1554 -205 6.4 TTAGCATTCTATTGACGAGAGTGCTAG
Lactobacillus casei ATCC 334 LSEI_1762 -257 5.9 TTAGCACTCTTAGTGGCAGAGTGCTTG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0510 -201 6.9 TTAGCACTTGACTAACTAGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_1388 -190 5.6 TTAGCATTAGTTGCCAATCAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_0683 -71 6.7 TTAGCACTTGACTACTAAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0815 -70 7.6 TTAGCACTCATATATCAAGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_1257 -211 6.9 TTAGCATTCATGGCTAAAGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01823 -128 6.2 TTAGCACTCTTGCGGTTAGAGTGCTTG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0571 -151 7.6 TTAGCACTCTACTTTAAAGAGTGCTAA
Position: -340
Score: 7.1
Sequence: TTAGCACTCTCCTTGCATGAGTGCTAA
Locus tag: LCABL_22120
LCABL_22120 -340 7.1 TTAGCACTCTCCTTGCATGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpC
Ortholog function: ATP-dependent Clp protease ATP-binding subunit ClpA
Lactobacillus acidophilus NCFM LBA1910 -57 6.9 TTAGCACTCAACGCACTAGAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_2043 -59 5.9 TTAGCACTTGAAGGCTTTAAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1775 -58 6.7 TTAGCACTTATAACTTATGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0207 -121 5.9 GTGGCACTTTTCTTGCTAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0976 -122 6.9 TTAGCACTTTACTTAACAGAGTGCTAA
Position: -56
Score: 6.7
Sequence: TTAGCACTTAGACATAACGAGTGCTAA
Locus tag: LCABL_24210
LCABL_24210 -56 6.7 TTAGCACTTAGACATAACGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: groS
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Lactobacillus casei ATCC 334 LSEI_2239 -56 6.7 TTAGCACTTAGACATAACGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0460 -155 6.9 TTAGCACTCTGATGATAAAAGTGCTAA
-70 7 TTAGCACTTATAATATATGAGTGCTAA
Lactobacillus rhamnosus GG LGG_02240 -56 6.6 TTAGCACTTAGACACAACGAGTGCTAA
Position: -98
Score: 6.7
Sequence: TTAGCACTCGACGTTTGCGAGTGCTAA
Locus tag: LCABL_30060
LCABL_30060 -98 6.7 TTAGCACTCGACGTTTGCGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hsp
Ortholog function: Small heat shock protein
Lactobacillus casei ATCC 334 LSEI_2800 -97 6.7 TTAGCACTCGACGTTTGCGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_0129 -149 7.5 TTAGCACTCGAGTTAAACGAGTGCTAA
Lactobacillus rhamnosus GG LGG_02804 -97 7.1 TTAGCACTCTAACATGACGAGTGCTAA
© 2009-2020 RegPrecise