Propagation of HrcA regulog to Lactobacillus casei BL23
| Source regulog: | HrcA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus casei BL23 |
| Orthologous TF(s) | LCABL_17800 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -51
Score: 6.9 Sequence: TTAGCACTGTACTTTTAAGAGTGCTAA
Locus tag: LCABL_10770
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| LCABL_10770 | -51 | 6.9 | TTAGCACTGTACTTTTAAGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpP | ||||
| Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | ||||
| Lactobacillus acidophilus NCFM | LBA0694 | -59 | 6.1 | TTAGCACAGTACTTGTATGAGTGCTAA |
| Lactobacillus casei ATCC 334 | LSEI_0963 | -51 | 6.9 | TTAGCACTGTACTTTTAAGAGTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0360 | -44 | 5.5 | TTAGCAAACAGTACTAACTAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_0735 | -60 | 6.6 | TTAGCACAGTACTTAAAAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0869 | -49 | 6.9 | TTAGCACTGTACTTATTAGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_0379 | -47 | 5.8 | TTAGCATATAAGACTAACGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_00931 | -54 | 7 | TTAGCACTGTACTTTAAAGAGTGCTAA |
|
Position: -42
Score: 7.6 Sequence: TTAGCACTCATATAAAACGAGTGCTAA
Locus tag: LCABL_17800
|
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| LCABL_17800 | -42 | 7.6 | TTAGCACTCATATAAAACGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hrcA | ||||
| Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family | ||||
| Lactobacillus acidophilus NCFM | LBA1249 | -93 | 6.1 | TTAGCACTCAGGTTGCATTATTGCTAA |
| -45 | 6.1 | TTAGCACCTGATAGATGTGAGTGCTAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_1331 | -127 | 6.1 | TTAGCACTTAATTACGTTGATTGCTAA |
| -43 | 6.9 | TTAGCACTTGTGTTGTTTGAGTGCTAA | ||
| Lactobacillus casei ATCC 334 | LSEI_1567 | -42 | 7.6 | TTAGCACTCATATAAAACGAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1229 | -92 | 5.7 | TTAGCATTCTCCTTGACTAACTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0749 | -33 | 6.4 | TTAGCACTTAGATGGCCAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ1481 | -91 | 6.4 | TTAGCACTCTACTTGAACAATTGCTAA |
| -43 | 6.3 | TTAGCACAGAAGAAAGAAGAGTGCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_2029 | -191 | 7.1 | TTAGCACTCGTAAGTAAGGAGTGCTAA |
| -36 | 6.7 | TTAGCACTCCATTAAGTTAAGTGCTAA | ||
| Lactobacillus reuteri JCM 1112 | LAR_0677 | -45 | 6.5 | TTAGCACTTGACCCTAATGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_01606 | -42 | 7.6 | TTAGCACTCGTGTAAAACGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1238 | -41 | 7 | TTAGCACTCGTAATAATCAAGTGCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0576 | -41 | 6.6 | TTAGCACTCTAATGTGTTAAGTGCTAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1349 | -110 | 7.4 | TTGGCACTCTTATAAAAAGAGTGCTAA |
| -41 | 6.3 | TTAGCAGTTAGATATAGTGAGTGCTAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0894 | -41 | 6.4 | TTAGCACTCCAACTTTCTAAGTGCTAA |
|
Position: -256
Score: 5.9 Sequence: TTAGCACTCTTAGTGGCAGAGTGCTTG
Locus tag: LCABL_19810
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| LCABL_19810 | -256 | 5.9 | TTAGCACTCTTAGTGGCAGAGTGCTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpL | ||||
| Ortholog function: ATP-dependent Clp protease, ATP-binding subunit | ||||
| Lactobacillus acidophilus NCFM | LBA0638 | -70 | 6.8 | TTAGCACTTGACTACCAAGAGTGCTAA |
| Lactobacillus brevis ATCC 367 | LVIS_1554 | -205 | 6.4 | TTAGCATTCTATTGACGAGAGTGCTAG |
| Lactobacillus casei ATCC 334 | LSEI_1762 | -257 | 5.9 | TTAGCACTCTTAGTGGCAGAGTGCTTG |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0510 | -201 | 6.9 | TTAGCACTTGACTAACTAGAGTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_1388 | -190 | 5.6 | TTAGCATTAGTTGCCAATCAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_0683 | -71 | 6.7 | TTAGCACTTGACTACTAAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0815 | -70 | 7.6 | TTAGCACTCATATATCAAGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_1257 | -211 | 6.9 | TTAGCATTCATGGCTAAAGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_01823 | -128 | 6.2 | TTAGCACTCTTGCGGTTAGAGTGCTTG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0571 | -151 | 7.6 | TTAGCACTCTACTTTAAAGAGTGCTAA |
|
Position: -340
Score: 7.1 Sequence: TTAGCACTCTCCTTGCATGAGTGCTAA
Locus tag: LCABL_22120
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| LCABL_22120 | -340 | 7.1 | TTAGCACTCTCCTTGCATGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpC | ||||
| Ortholog function: ATP-dependent Clp protease ATP-binding subunit ClpA | ||||
| Lactobacillus acidophilus NCFM | LBA1910 | -57 | 6.9 | TTAGCACTCAACGCACTAGAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_2043 | -59 | 5.9 | TTAGCACTTGAAGGCTTTAAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ1775 | -58 | 6.7 | TTAGCACTTATAACTTATGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0207 | -121 | 5.9 | GTGGCACTTTTCTTGCTAGAGTGCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0976 | -122 | 6.9 | TTAGCACTTTACTTAACAGAGTGCTAA |
|
Position: -56
Score: 6.7 Sequence: TTAGCACTTAGACATAACGAGTGCTAA
Locus tag: LCABL_24210
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| LCABL_24210 | -56 | 6.7 | TTAGCACTTAGACATAACGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: groS | ||||
| Ortholog function: Heat shock protein 60 family co-chaperone GroES | ||||
| Lactobacillus casei ATCC 334 | LSEI_2239 | -56 | 6.7 | TTAGCACTTAGACATAACGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0460 | -155 | 6.9 | TTAGCACTCTGATGATAAAAGTGCTAA |
| -70 | 7 | TTAGCACTTATAATATATGAGTGCTAA | ||
| Lactobacillus rhamnosus GG | LGG_02240 | -56 | 6.6 | TTAGCACTTAGACACAACGAGTGCTAA |
|
Position: -98
Score: 6.7 Sequence: TTAGCACTCGACGTTTGCGAGTGCTAA
Locus tag: LCABL_30060
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| LCABL_30060 | -98 | 6.7 | TTAGCACTCGACGTTTGCGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hsp | ||||
| Ortholog function: Small heat shock protein | ||||
| Lactobacillus casei ATCC 334 | LSEI_2800 | -97 | 6.7 | TTAGCACTCGACGTTTGCGAGTGCTAA |
| Lactobacillus plantarum WCFS1 | lp_0129 | -149 | 7.5 | TTAGCACTCGAGTTAAACGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_02804 | -97 | 7.1 | TTAGCACTCTAACATGACGAGTGCTAA |