Regulog FatR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Toxic fatty acid stress response
Effector:	Oleate; Gamma-linolenic acid; Linoleate; Phytanate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - TetR
By effector - Oleate
By effector - Gamma-linolenic acid
By effector - Linoleate
By effector - Phytanate
By pathway - Toxic fatty acid stress response

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334	2	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG	2	1
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1	3	3
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
PF06100	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_0281: Predicted oxidoreductase	Lactobacillus casei ATCC 334 Gene: LSEI_0416: Predicted oxidoreductase	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0139: Predicted oxidoreductase	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00503: Predicted oxidoreductase	Lactobacillus sakei subsp. sakei 23K Gene: LSA0235: Predicted oxidoreductase	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1641: Predicted oxidoreductase	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	* Oenococcus oeni PSU-1 Site: position = -40 score = 6.44604 sequence = GAATGAATATTCATTC Gene: OEOE_1715: Predicted oxidoreductase	Pediococcus pentosaceus ATCC 25745	Predicted oxidoreductase

CRON 2.
fatR	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	* Lactobacillus casei ATCC 334 Site: position = -29 score = 6.44604 sequence = GAATGAACGTTCATTC Gene: LSEI_0061: Predicted transport transcriptional regulator FatR, TetR family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -33 score = 6.44604 sequence = GAATGAACGTTCATTC Gene: LGG_00069: Predicted transport transcriptional regulator FatR, TetR family	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	* Oenococcus oeni PSU-1 Site: position = -33 score = 6.21124 sequence = GAATGAATAATCATTC Gene: OEOE_0179: Predicted transport transcriptional regulator FatR, TetR family	Pediococcus pentosaceus ATCC 25745	Predicted transport transcriptional regulator FatR, TetR family
cypB	Lactobacillus acidophilus NCFM Gene: LBA1637: Cytochrome P450 CYP102A3	Lactobacillus brevis ATCC 367 Gene: LVIS_0758: Cytochrome P450 CYP102A3	Lactobacillus casei ATCC 334 Gene: LSEI_0060: Cytochrome P450 CYP102A3	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1757: Cytochrome P450 CYP102A3	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571 Gene: lhv_1741: Cytochrome P450 CYP102A3	Lactobacillus johnsonii NCC 533 Gene: LJ0667: Cytochrome P450 CYP102A3	Lactobacillus plantarum WCFS1 Gene: lp_0295: Cytochrome P450 CYP102A3	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00068: Cytochrome P450 CYP102A3	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0328: Cytochrome P450 CYP102A3	Cytochrome P450 CYP102A3

CRON 3.
COG1511	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1944: Predicted membrane protein	* Oenococcus oeni PSU-1 Site: position = -54 score = 6.21124 sequence = GAATGATTGTTCATTC Gene: OEOE_0180: Predicted membrane protein	Pediococcus pentosaceus ATCC 25745	Predicted membrane protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FatR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --