Regulog FatR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Toxic fatty acid stress response |
| Effector: | Oleate; Gamma-linolenic acid; Linoleate; Phytanate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - TetR
- By effector - Oleate
- By effector - Gamma-linolenic acid
- By effector - Linoleate
- By effector - Phytanate
- By pathway - Toxic fatty acid stress response
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | 2 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | 2 | 1 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | 3 | 3 |
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| PF06100 |
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Gene: LVIS_0281: Predicted oxidoreductase |
Gene: LSEI_0416: Predicted oxidoreductase |
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Gene: lp_0139: Predicted oxidoreductase |
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Gene: LGG_00503: Predicted oxidoreductase |
Gene: LSA0235: Predicted oxidoreductase |
Gene: LSL_1641: Predicted oxidoreductase |
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Oenococcus oeni PSU-1 Site: position = -40 score = 6.44604 sequence = GAATGAATATTCATTC Gene: OEOE_1715: Predicted oxidoreductase |
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Predicted oxidoreductase |
| CRON 2. | ||||||||||||||||
| fatR |
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Lactobacillus casei ATCC 334 Site: position = -29 score = 6.44604 sequence = GAATGAACGTTCATTC Gene: LSEI_0061: Predicted transport transcriptional regulator FatR, TetR family |
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Lactobacillus rhamnosus GG Site: position = -33 score = 6.44604 sequence = GAATGAACGTTCATTC Gene: LGG_00069: Predicted transport transcriptional regulator FatR, TetR family |
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Oenococcus oeni PSU-1 Site: position = -33 score = 6.21124 sequence = GAATGAATAATCATTC Gene: OEOE_0179: Predicted transport transcriptional regulator FatR, TetR family |
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Predicted transport transcriptional regulator FatR, TetR family |
| cypB |
Gene: LBA1637: Cytochrome P450 CYP102A3 |
Gene: LVIS_0758: Cytochrome P450 CYP102A3 |
Gene: LSEI_0060: Cytochrome P450 CYP102A3 |
Gene: LBUL_1757: Cytochrome P450 CYP102A3 |
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Gene: lhv_1741: Cytochrome P450 CYP102A3 |
Gene: LJ0667: Cytochrome P450 CYP102A3 |
Gene: lp_0295: Cytochrome P450 CYP102A3 |
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Gene: LGG_00068: Cytochrome P450 CYP102A3 |
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Gene: PEPE_0328: Cytochrome P450 CYP102A3 |
Cytochrome P450 CYP102A3 |
| CRON 3. | ||||||||||||||||
| COG1511 |
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Gene: LEUM_1944: Predicted membrane protein |
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Oenococcus oeni PSU-1 Site: position = -54 score = 6.21124 sequence = GAATGATTGTTCATTC Gene: OEOE_0180: Predicted membrane protein |
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Predicted membrane protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |