Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of DeoR regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: DeoR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: SorC
Regulation mode: repressor
Biological process: Deoxynucleoside utilization
Effector: Deoxyribose-5-phosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_1739
Regulated genes 2
Built upon 7 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -88
Score: 5.3
Sequence: TTGAATACGCTTTCAT
Locus tag: LAF_1739
LAF_1739 -88 5.3 TTGAATACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoR
Ortholog function: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
Lactobacillus brevis ATCC 367 LVIS_1592 -19 5.7 ATGAAAGGGGTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1739 -88 5.3 TTGAATACGCTTTCAT
Lactobacillus reuteri JCM 1112 LAR_0109 -39 5.6 ATGAAAACGCATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0800 -34 5.1 TTGAAAGCGTTAACAA
Position: -37
Score: 5.7
Sequence: ATGAAAGCGTATTCAA
Locus tag: LAF_1740
LAF_1740 -37 5.7 ATGAAAGCGTATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Lactobacillus brevis ATCC 367 LVIS_1595 -19 5.7 ATGAAAGGGGTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1740 -37 5.7 ATGAAAGCGTATTCAA
Lactobacillus plantarum WCFS1 lp_0497 -21 5.4 AAGAAAGGGGTTTCAT
Lactobacillus reuteri JCM 1112 LAR_0105 -39 5.6 ATGAAAACGCATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0795 -34 5.1 TTGAAAGCGTTAACAA
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