Regulog DeoR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	SorC
Regulation mode:	repressor
Biological process:	Deoxynucleoside utilization
Effector:	Deoxyribose-5-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - SorC
By effector - Deoxyribose-5-phosphate
By pathway - Deoxynucleoside utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	5	1
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956	4	2
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	4	1
Lactobacillus reuteri JCM 1112	6	2
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K	7	1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
deoC	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -19 score = 5.71383 sequence = ATGAAAGGGGTTTCAT Gene: LVIS_1595: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Lactobacillus casei ATCC 334 Gene: LSEI_0278: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -37 score = 5.71383 sequence = ATGAAAGCGTATTCAA Gene: LAF_1740: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -21 score = 5.41437 sequence = AAGAAAGGGGTTTCAT Gene: lp_0497: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Lactobacillus reuteri JCM 1112 Site: position = -39 score = 5.57973 sequence = ATGAAAACGCATTCAA Gene: LAR_0105: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Lactobacillus rhamnosus GG Gene: LGG_00321: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	* Lactobacillus sakei subsp. sakei 23K Site: position = -34 score = 5.11491 sequence = TTGAAAGCGTTAACAA Gene: LSA0795: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Deoxyribose-phosphate aldolase (EC 4.1.2.4)
deoB	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1594: Phosphopentomutase (EC 5.4.2.7)	2 Lactobacillus casei ATCC 334 Gene: LSEI_0279: Phosphopentomutase (EC 5.4.2.7) Gene: LSEI_2341: Phosphopentomutase (EC 5.4.2.7)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112 Gene: LAR_0106: Phosphopentomutase (EC 5.4.2.7)	Lactobacillus rhamnosus GG Gene: LGG_00322: Phosphopentomutase (EC 5.4.2.7)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0796: Phosphopentomutase (EC 5.4.2.7)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Phosphopentomutase (EC 5.4.2.7)
deoD	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1593: Purine nucleoside phosphorylase (EC 2.4.2.1)	Lactobacillus casei ATCC 334 Gene: LSEI_0280: Purine nucleoside phosphorylase (EC 2.4.2.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112 Gene: LAR_0108: Purine nucleoside phosphorylase (EC 2.4.2.1)	Lactobacillus rhamnosus GG Gene: LGG_00323: Purine nucleoside phosphorylase (EC 2.4.2.1)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0797: Purine nucleoside phosphorylase (EC 2.4.2.1)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Purine nucleoside phosphorylase (EC 2.4.2.1)
nupC	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_2071: Pyrimidine-nucleoside Na+(H+) cotransporter	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_0074: Pyrimidine-nucleoside Na+(H+) cotransporter	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_3204: Pyrimidine-nucleoside Na+(H+) cotransporter	* Lactobacillus reuteri JCM 1112 Site: position = -251 score = 5.22327 sequence = ATGACAGCGTTTTCAT Gene: LAR_0095: Pyrimidine-nucleoside Na+(H+) cotransporter	Lactobacillus rhamnosus GG	2 Lactobacillus sakei subsp. sakei 23K Gene: LSA0798: Pyrimidine-nucleoside Na+(H+) cotransporter Gene: LSA0287: Pyrimidine-nucleoside Na+(H+) cotransporter	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1735: Pyrimidine-nucleoside Na+(H+) cotransporter	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0796: Pyrimidine-nucleoside Na+(H+) cotransporter	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1727: Pyrimidine-nucleoside Na+(H+) cotransporter	Pyrimidine-nucleoside Na+(H+) cotransporter
pbuO	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_2070: Guanine/hypoxanthine permease	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA0799: Guanine/hypoxanthine permease	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1025: Guanine/hypoxanthine permease	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Guanine/hypoxanthine permease
deoR	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1592: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -88 score = 5.28026 sequence = TTGAATACGCTTTCAT Gene: LAF_1739: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0495: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family	Lactobacillus reuteri JCM 1112 Gene: LAR_0109: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA0800: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Deoxynucleoside utilization transcriptional regulator DeoR, SorC family
pdp	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1591: Thymidine phosphorylase	Lactobacillus casei ATCC 334 Gene: LSEI_2206: Thymidine phosphorylase	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112 Gene: LAR_0107: Thymidine phosphorylase	Lactobacillus rhamnosus GG Gene: LGG_02209: Thymidine phosphorylase	Lactobacillus sakei subsp. sakei 23K Gene: LSA0801: Thymidine phosphorylase	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
lp_0498	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0498: Homolog of fucose/glucose/galactose permeases	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Homolog of fucose/glucose/galactose permeases
LAF_1741	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1741: Conserved hypothetical protein	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0499: Conserved hypothetical protein	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Conserved hypothetical protein
rbsK1	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1742: Ribokinase (EC 2.7.1.15)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0500: Ribokinase (EC 2.7.1.15)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Ribokinase (EC 2.7.1.15)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DeoR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --