Regulog DeoR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | SorC |
| Regulation mode: | repressor |
| Biological process: | Deoxynucleoside utilization |
| Effector: | Deoxyribose-5-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - SorC
- By effector - Deoxyribose-5-phosphate
- By pathway - Deoxynucleoside utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 5 | 1 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 4 | 2 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 4 | 1 |
| Lactobacillus reuteri JCM 1112 | 6 | 2 |
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | 7 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| deoC |
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Lactobacillus brevis ATCC 367 Site: position = -19 score = 5.71383 sequence = ATGAAAGGGGTTTCAT Gene: LVIS_1595: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
Gene: LSEI_0278: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
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Lactobacillus fermentum IFO 3956 Site: position = -37 score = 5.71383 sequence = ATGAAAGCGTATTCAA Gene: LAF_1740: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
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Lactobacillus plantarum WCFS1 Site: position = -21 score = 5.41437 sequence = AAGAAAGGGGTTTCAT Gene: lp_0497: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
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Lactobacillus reuteri JCM 1112 Site: position = -39 score = 5.57973 sequence = ATGAAAACGCATTCAA Gene: LAR_0105: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
Gene: LGG_00321: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -34 score = 5.11491 sequence = TTGAAAGCGTTAACAA Gene: LSA0795: Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
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Deoxyribose-phosphate aldolase (EC 4.1.2.4) |
| deoB |
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Gene: LVIS_1594: Phosphopentomutase (EC 5.4.2.7) |
2
Lactobacillus casei ATCC 334 Gene: LSEI_0279: Phosphopentomutase (EC 5.4.2.7) Gene: LSEI_2341: Phosphopentomutase (EC 5.4.2.7) |
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Gene: LAR_0106: Phosphopentomutase (EC 5.4.2.7) |
Gene: LGG_00322: Phosphopentomutase (EC 5.4.2.7) |
Gene: LSA0796: Phosphopentomutase (EC 5.4.2.7) |
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Phosphopentomutase (EC 5.4.2.7) |
| deoD |
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Gene: LVIS_1593: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: LSEI_0280: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Gene: LAR_0108: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: LGG_00323: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Gene: LSA0797: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Purine nucleoside phosphorylase (EC 2.4.2.1) |
| nupC |
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Gene: LVIS_2071: Pyrimidine-nucleoside Na+(H+) cotransporter |
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Gene: LAF_0074: Pyrimidine-nucleoside Na+(H+) cotransporter |
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Gene: lp_3204: Pyrimidine-nucleoside Na+(H+) cotransporter |
*
Lactobacillus reuteri JCM 1112 Site: position = -251 score = 5.22327 sequence = ATGACAGCGTTTTCAT Gene: LAR_0095: Pyrimidine-nucleoside Na+(H+) cotransporter |
|
2
Lactobacillus sakei subsp. sakei 23K Gene: LSA0798: Pyrimidine-nucleoside Na+(H+) cotransporter Gene: LSA0287: Pyrimidine-nucleoside Na+(H+) cotransporter |
Gene: LSL_1735: Pyrimidine-nucleoside Na+(H+) cotransporter |
Gene: LEUM_0796: Pyrimidine-nucleoside Na+(H+) cotransporter |
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Gene: PEPE_1727: Pyrimidine-nucleoside Na+(H+) cotransporter |
Pyrimidine-nucleoside Na+(H+) cotransporter |
| pbuO |
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Gene: LVIS_2070: Guanine/hypoxanthine permease |
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Gene: LSA0799: Guanine/hypoxanthine permease |
Gene: LSL_1025: Guanine/hypoxanthine permease |
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Guanine/hypoxanthine permease |
| deoR |
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Gene: LVIS_1592: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family |
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*
Lactobacillus fermentum IFO 3956 Site: position = -88 score = 5.28026 sequence = TTGAATACGCTTTCAT Gene: LAF_1739: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family |
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Gene: lp_0495: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family |
Gene: LAR_0109: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family |
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Gene: LSA0800: Deoxynucleoside utilization transcriptional regulator DeoR, SorC family |
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Deoxynucleoside utilization transcriptional regulator DeoR, SorC family |
| pdp |
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Gene: LVIS_1591: Thymidine phosphorylase |
Gene: LSEI_2206: Thymidine phosphorylase |
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Gene: LAR_0107: Thymidine phosphorylase |
Gene: LGG_02209: Thymidine phosphorylase |
Gene: LSA0801: Thymidine phosphorylase |
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Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) |
| lp_0498 |
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Gene: lp_0498: Homolog of fucose/glucose/galactose permeases |
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Homolog of fucose/glucose/galactose permeases |
| LAF_1741 |
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Gene: LAF_1741: Conserved hypothetical protein |
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Gene: lp_0499: Conserved hypothetical protein |
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Conserved hypothetical protein |
| rbsK1 |
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Gene: LAF_1742: Ribokinase (EC 2.7.1.15) |
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Gene: lp_0500: Ribokinase (EC 2.7.1.15) |
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Ribokinase (EC 2.7.1.15) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |