Propagation of NrdR regulog to Lactobacillus plantarum JDM1
| Source regulog: | NrdR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus plantarum JDM1 |
| Orthologous TF(s) | JDM1_1265 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -86
Score: 4.6 Sequence: ACCCTAGATGTTGTGT
Position: -54
Score: 4.7 Sequence: TCACCACATGTTGTAT
Locus tag: JDM1_0567
|
||||
| JDM1_0567 | -86 | 4.6 | ACCCTAGATGTTGTGT | |
| -54 | 4.7 | TCACCACATGTTGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdH | ||||
| Ortholog function: Glutaredoxin-like protein NrdH | ||||
| Lactobacillus plantarum WCFS1 | lp_0694 | -86 | 4.6 | ACCCTAGATGTTGTGT |
| -54 | 4.7 | TCACCACATGTTGTAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1487 | -122 | 5.3 | GCACAATATATAGTGG |
|
Position: -99
Score: 4.4 Sequence: TCACCAGATATTGCAT
Position: -67
Score: 5 Sequence: GTACAATATGTAGTGT
Locus tag: JDM1_0837
|
||||
| JDM1_0837 | -99 | 4.4 | TCACCAGATATTGCAT | |
| -67 | 5 | GTACAATATGTAGTGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dgk1 | ||||
| Ortholog function: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1711 | -100 | 4.8 | CCACGATATATTGTCT |
| -68 | 4.9 | GTACAATATGTGGTGT | ||
| Lactobacillus plantarum WCFS1 | lp_1011 | -99 | 4.4 | TCACCAGATATTGCAT |
| -67 | 5 | GTACAATATGTAGTGT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1437 | -77 | 4.1 | TTTCAAGATATTGTTT |
| -46 | 4.4 | GTACAATATGTAGTGC | ||
|
Position: -40
Score: 5.1 Sequence: ATACAATATATTGTGC
Locus tag: JDM1_1124
|
||||
| JDM1_1124 | -40 | 5.1 | ATACAATATATTGTGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dgk2 | ||||
| Ortholog function: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1520 | -41 | 3.6 | GTACACTATATCTTGT |
| -39 | 5.7 | ACACTATATCTTGTAT | ||
| Lactobacillus plantarum WCFS1 | lp_1329 | -72 | 3.9 | AAAGTCTATATGGTAT |
| -40 | 5.1 | ATACAATATATTGTGC | ||
| Lactobacillus reuteri JCM 1112 | LAR_1221 | -88 | 4.4 | CCACCAAATATTGTAA |
| -56 | 5 | CCACAATATTTTGTAG | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0650 | -83 | 5.2 | ATACAATATGTTGTGG |
|
Position: -80
Score: 5.5 Sequence: CTACTATATATAGTAT
Locus tag: JDM1_2351
|
||||
| JDM1_2351 | -80 | 5.5 | CTACTATATATAGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Lactobacillus acidophilus NCFM | LBA0160 | -58 | 4.5 | ATACAAGATGTTGTGC |
| Lactobacillus casei ATCC 334 | LSEI_0131 | -133 | 5 | ACACACTATATAGTGT |
| -131 | 5.5 | ACACTATATAGTGTAT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0185 | -173 | 5.3 | CCACAATATCTGGTAT |
| -131 | 4.6 | AAACAAGATGTAGTGG | ||
| Lactobacillus fermentum IFO 3956 | LAF_1376 | -99 | 4.7 | CCACAAGATCTTGTAA |
| -68 | 5.3 | AAACTATATGTTGTGT | ||
| Lactobacillus helveticus DPC 4571 | lhv_0169 | -56 | 5.1 | ATACAAGATGTTGTAT |
| Lactobacillus johnsonii NCC 533 | LJ0137 | -63 | 4.6 | CTACAATATCATGTAG |
| Lactobacillus plantarum WCFS1 | lp_2932 | -80 | 5.5 | CTACTATATATAGTAT |
| -49 | 4.4 | GCACTATCAATTGTAT | ||
| Lactobacillus reuteri JCM 1112 | LAR_1249 | -92 | 5.3 | CCACAACATATAGTGT |
| Lactobacillus rhamnosus GG | LGG_00138 | -131 | 5.5 | CCACTATATAGTGTAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1459 | -75 | 5.1 | ACACTATATATAGTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1332 | -108 | 5.5 | ATACTATATATAGTGT |
| -76 | 5.9 | ACACTATATATTGTAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0484 | -133 | 5.7 | ATACTATATATTGTAT |