Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CopR regulog to Lactobacillus plantarum JDM1

Reference regulog properties
Source regulog: CopR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: CopY
Regulation mode: repressor
Biological process: Copper homeostasis
Effector: Copper ion, (Cu2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum JDM1
Orthologous TF(s) JDM1_2697
Regulated genes 3
Built upon 34 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum JDM1
Locus tag Position Score Sequence
Position: -42
Score: 6.4
Sequence: TAGATTACAAATGTAAACGA
Locus tag: JDM1_2437
JDM1_2437 -42 6.4 TAGATTACAAATGTAAACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: copA2
Ortholog function: Copper-exporting ATPase (EC 3.6.3.4)
Lactobacillus brevis ATCC 367 LVIS_0274 -184 5.1 TCGTTGACAGATGTAAACGA
-139 5.7 AGGATTACATTTGTAAACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1706 -35 5.4 GTGATTACAAATGTAAATTA
Position: -43
Score: 5.9
Sequence: TAAATTACAGATGTAGACAA
Locus tag: JDM1_2696
JDM1_2696 -43 5.9 TAAATTACAGATGTAGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: copB
Ortholog function: Copper-translocating P-type ATPase (EC 3.6.3.4)
Lactobacillus brevis ATCC 367 LVIS_0269 -68 5.4 ATGACTACAGATGTAGACTC
-35 6 AAGATTACATTTGTAGTCTA
Lactobacillus casei ATCC 334 LSEI_1743 -59 5 TGGTTTACAGTTGTAAATTA
-29 6.1 TAGATTACAGATGTAAACGG
Lactobacillus plantarum WCFS1 lp_3363 -69 4.7 TCGTCTACAATTGTAAACTT
-43 5.9 TAAATTACAGATGTAGACAA
Lactobacillus rhamnosus GG LGG_01801 -59 5 TCGTTTACAGTTGTAAATTA
-29 6.2 AAGATTACAAGTGTAAACGG
Lactobacillus sakei subsp. sakei 23K LSA1460 -35 6.4 ATAATTACAAATGTAAACGA
Pediococcus pentosaceus ATCC 25745 PEPE_1645 -61 6.1 AAGTTTACAAATGTAGTCTA
-35 5.9 AAGATTACATTTGTAAACAG
Position: -52
Score: 5.2
Sequence: ACGTTTACGGTTGTAAACTA
Locus tag: JDM1_2697
JDM1_2697 -52 5.2 ACGTTTACGGTTGTAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: copR
Ortholog function: Copper transport transcriptional regulator CopR, CopY family
Lactobacillus brevis ATCC 367 LVIS_0270 -68 5.4 ATGACTACAGATGTAGACTC
-35 6 AAGATTACATTTGTAGTCTA
Lactobacillus casei ATCC 334 LSEI_1745 -59 5 TGGTTTACAGTTGTAAATTA
-29 6.1 TAGATTACAGATGTAAACGG
Lactobacillus plantarum WCFS1 lp_3365 -52 5.2 ACGTTTACGGTTGTAAACTA
Lactobacillus rhamnosus GG LGG_01802 -59 5 TCGTTTACAGTTGTAAATTA
-29 6.2 AAGATTACAAGTGTAAACGG
Pediococcus pentosaceus ATCC 25745 PEPE_1646 -61 6.1 AAGTTTACAAATGTAGTCTA
-35 5.9 AAGATTACATTTGTAAACAG
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