Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Lactobacillus sakei subsp. sakei 23K

Reference regulog properties
Source regulog: Rex - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus sakei subsp. sakei 23K
Orthologous TF(s) LSA0356, LSA0848
Regulated genes 7
Built upon 68 sites [see more]
Predicted regulatory interactions in Lactobacillus sakei subsp. sakei 23K
Locus tag Position Score Sequence
Position: -35
Score: 5.3
Sequence: TTGTGAAATAATTCAGAA
Locus tag: LSA0122
LSA0122 -35 5.3 TTGTGAAATAATTCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus plantarum WCFS1 lp_3051 -116 5 TTGTGAAAAATATAATTA
Lactobacillus reuteri JCM 1112 LAR_0029 -164 5.2 TTGTGAATATTATGACAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -35 5.3 TTGTGAAATAATTCAGAA
Position: -99
Score: 5.1
Sequence: CTGTTAAAAAAATCACAA
Position: -42
Score: 5.2
Sequence: TTGTTAATTAAATCACAT
Locus tag: LSA0379
LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -45 5.5 TTGTAAATTAGTTCACAA
Lactobacillus brevis ATCC 367 LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Lactobacillus casei ATCC 334 LSEI_0775 -106 5 TCGTGAAAAAATTCACCA
-85 4.7 TTGTTTACAAAATCACAA
-49 5.4 TTGTGAAATGGTTAACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1581 -47 5.2 TTGAGAAATTGATCACAA
Lactobacillus fermentum IFO 3956 LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
-85 4.5 TTGTTGACTAAATCACAA
Lactobacillus johnsonii NCC 533 LJ1766 -289 4.8 TTATTAAAATTTTAACAT
-191 5.3 TTGTGAAATATTTTTCAA
-104 5 TTGTAAAAAGATGCACAA
Lactobacillus plantarum WCFS1 lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Lactobacillus reuteri JCM 1112 LAR_0310 -238 4.4 TTGTGAAATAGACTTCAA
-104 5.1 TTGTTTAAATGTTCACAA
Lactobacillus rhamnosus GG LGG_00757 -105 5.2 TCGTGAAAAAGTTCACTA
-84 4.7 TTGTTTACAAAATCACAA
-48 5.4 TTGTGAAATGGTTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
Position: -193
Score: 4.7
Sequence: TTTATAATAAAATCACAA
Locus tag: LSA0802
LSA0802 -193 4.7 TTTATAATAAAATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Lactobacillus brevis ATCC 367 LVIS_1558 -44 5.4 TTGTGAAAATTATCTCAA
Lactobacillus casei ATCC 334 LSEI_0285 -109 5 TTAATAAATATTTCACAA
-40 5 TTGTGAAAAGGTTATCAA
Lactobacillus rhamnosus GG LGG_00325 -41 5.3 TTGTGAAATTTTTATCAA
Lactobacillus sakei subsp. sakei 23K LSA0802 -193 4.7 TTTATAATAAAATCACAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2067 -114 4.6 TCGTGTTAAATATCACAA
Position: -77
Score: 5.1
Sequence: ATATGAAAAAATTCACAA
Locus tag: LSA0848
LSA0848 -77 5.1 ATATGAAAAAATTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rex2
Ortholog function: Redox-sensitive transcriptional regulator Rex paralog
Lactobacillus casei ATCC 334 LSEI_1250 -39 4.6 ATGTGAAAAGAGTAACAA
Lactobacillus rhamnosus GG LGG_01260 -39 4.8 ATGTGAAAATGGTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0848 -77 5.1 ATATGAAAAAATTCACAA
Position: -97
Score: 4.9
Sequence: TTCTGAAAATTTAAACAA
Locus tag: LSA1606
LSA1606 -97 4.9 TTCTGAAAATTTAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27)
Lactobacillus acidophilus NCFM LBA0271 -40 5.4 TTGTTAAAATTATCACTA
Lactobacillus helveticus DPC 4571 lhv_0289 -39 5.4 TTGTTAAAATTATCACTA
Lactobacillus johnsonii NCC 533 LJ0274 -40 5.4 TTGTTAAATAAATCACTA
Lactobacillus sakei subsp. sakei 23K LSA1606 -97 4.9 TTCTGAAAATTTAAACAA
Position: -73
Score: 5.3
Sequence: TTGTGAAAAAAATCATAA
Locus tag: LSA1702
LSA1702 -73 5.3 TTGTGAAAAAAATCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB1
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Lactobacillus brevis ATCC 367 LVIS_1019 -79 4.8 TTGTGCAAAATTTCACTT
Lactobacillus sakei subsp. sakei 23K LSA1702 -73 5.3 TTGTGAAAAAAATCATAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1919 -36 5.2 TTGTAAATAAGTTCACAT
Oenococcus oeni PSU-1 OEOE_0527 -176 4.9 TTGTAAATTTTTGTACAA
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