Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GntR1 regulog to Lactobacillus casei BL23

Reference regulog properties
Source regulog: GntR1 - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode:
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei BL23
Orthologous TF(s) LCABL_12870, LCABL_02260
Regulated genes 2
Built upon 32 sites [see more]
Predicted regulatory interactions in Lactobacillus casei BL23
Locus tag Position Score Sequence
Position: -208
Score: 6
Sequence: TATGTAAATAGTTTACAAA
Position: -175
Score: 5.1
Sequence: ACCGTAAATTATTTTCACA
Locus tag: LCABL_02260
LCABL_02260 -208 6 TATGTAAATAGTTTACAAA
-175 5.1 ACCGTAAATTATTTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntR1
Ortholog function: Gluconate utilization transcriptional regulator GntR1, RpiR family
Lactobacillus casei ATCC 334 LSEI_0226 -208 5.7 TATGTAAATCGTTTACAAA
-175 4.7 ACCGTAAATTATTTTCACG
Lactobacillus rhamnosus GG LGG_00273 -96 5.8 TATGTAAAATAATTACAAA
-63 5.4 TTCGTAAATAATTTTCAAT
Lactobacillus sakei subsp. sakei 23K LSA0296 -70 5.2 ATAGAAAATTATTTTCGTA
Pediococcus pentosaceus ATCC 25745 PEPE_1363 -101 5.8 TATGAAAATATGTTACATA
-69 5.3 CAAGAAAATTATTTTCTTA
Position: -146
Score: 5.1
Sequence: TGTGAAAATAATTTACGGT
Position: -113
Score: 6
Sequence: TTTGTAAACTATTTACATA
Locus tag: LCABL_02270
LCABL_02270 -146 5.1 TGTGAAAATAATTTACGGT
-113 6 TTTGTAAACTATTTACATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntZ
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Lactobacillus brevis ATCC 367 LVIS_0144 -106 4.8 TTTGTAATTTTTTTACGGT
-75 6.3 TATGTAAATTTTTTTCATA
Lactobacillus casei ATCC 334 LSEI_0227 -146 4.7 CGTGAAAATAATTTACGGT
-113 5.7 TTTGTAAACGATTTACATA
Lactobacillus plantarum WCFS1 lp_1251 -109 6 AATGAAAATAATTTACAAA
-77 5.1 TATGTAAATAGTTTTATTA
Lactobacillus rhamnosus GG LGG_00274 -238 5.4 ATTGAAAATTATTTACGAA
-205 5.8 TTTGTAATTATTTTACATA
Lactobacillus sakei subsp. sakei 23K LSA0297 -96 5.2 TACGAAAATAATTTTCTAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0551 -97 5.1 TTAGAAAACAATTTTCAAT
-65 6.1 TGTGTAAATTATTTTCATA
Oenococcus oeni PSU-1 OEOE_1523 -78 5.6 TATGTAAATATTTTACACG
-46 5.4 TGAGTAAAAAAATTACATA
Pediococcus pentosaceus ATCC 25745 PEPE_1362 -98 5.3 TAAGAAAATAATTTTCTTG
-66 5.8 TATGTAACATATTTTCATA