Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog GntR1 - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode:
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367 5 4
Lactobacillus casei ATCC 334 4 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 3 1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG 4 2
Lactobacillus sakei subsp. sakei 23K 4 2
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 4 2
Oenococcus oeni PSU-1 2 2
Pediococcus pentosaceus ATCC 25745 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gntZ
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -75
score = 6.25272
sequence = TATGTAAATTTTTTTCATA

Site:
position = -106
score = 4.77658
sequence = TTTGTAATTTTTTTACGGT

Gene: LVIS_0144: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
*
Lactobacillus casei ATCC 334

Site:
position = -146
score = 4.68118
sequence = CGTGAAAATAATTTACGGT

Site:
position = -113
score = 5.66244
sequence = TTTGTAAACGATTTACATA

Gene: LSEI_0227: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -109
score = 5.95275
sequence = AATGAAAATAATTTACAAA

Site:
position = -77
score = 5.09695
sequence = TATGTAAATAGTTTTATTA

Gene: lp_1251: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -238
score = 5.44662
sequence = ATTGAAAATTATTTACGAA

Site:
position = -205
score = 5.7952
sequence = TTTGTAATTATTTTACATA

Gene: LGG_00274: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -96
score = 5.18665
sequence = TACGAAAATAATTTTCTAT

Gene: LSA0297: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -97
score = 5.13707
sequence = TTAGAAAACAATTTTCAAT

Site:
position = -65
score = 6.13074
sequence = TGTGTAAATTATTTTCATA

Gene: LEUM_0551: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
*
Oenococcus oeni PSU-1

Site:
position = -78
score = 5.63801
sequence = TATGTAAATATTTTACACG

Site:
position = -46
score = 5.35146
sequence = TGAGTAAAAAAATTACATA

Gene: OEOE_1523: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -98
score = 5.33059
sequence = TAAGAAAATAATTTTCTTG

Site:
position = -66
score = 5.81172
sequence = TATGTAACATATTTTCATA

Gene: PEPE_1362: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
gntK
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -143
score = 5.2134
sequence = AGTGAAACTTTTTTACATA

Site:
position = -175
score = 5.16863
sequence = TTTGTAAACATTTTACAAC

Gene: LVIS_1585: Gluconokinase (EC 2.7.1.12)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0228: Gluconokinase (EC 2.7.1.12)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1250: Gluconokinase (EC 2.7.1.12)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00275: Gluconokinase (EC 2.7.1.12)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0298: Gluconokinase (EC 2.7.1.12)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0552: Gluconokinase (EC 2.7.1.12)
 
Oenococcus oeni PSU-1

Gene: OEOE_1421: Gluconokinase (EC 2.7.1.12)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1361: Gluconokinase (EC 2.7.1.12)
Gluconokinase (EC 2.7.1.12)
gntP
 
Lactobacillus acidophilus NCFM
*2
Lactobacillus brevis ATCC 367

Site:
position = -131
score = 4.56354
sequence = TTTGAAAATAACATTCAAT

Site:
position = -99
score = 5.66663
sequence = CTTGAAAATATTTTTCATA

Gene: LVIS_1576: H+/gluconate symporter related permease

Gene: LVIS_1586: H+/gluconate symporter related permease
 
Lactobacillus casei ATCC 334

Gene: LSEI_0229: H+/gluconate symporter related permease
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1249: H+/gluconate symporter related permease
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00277: H+/gluconate symporter related permease
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0299: H+/gluconate symporter related permease
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0553: H+/gluconate symporter related permease
 
Oenococcus oeni PSU-1

Gene: OEOE_1420: H+/gluconate symporter related permease
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1360: H+/gluconate symporter related permease
H+/gluconate symporter related permease
 
CRON 2.
gntR1
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -63
score = 5.16863
sequence = GTTGTAAAATGTTTACAAA

Site:
position = -95
score = 5.2134
sequence = TATGTAAAAAAGTTTCACT

Gene: LVIS_1584: Gluconate utilization transcriptional regulator GntR1, RpiR family
*
Lactobacillus casei ATCC 334

Site:
position = -208
score = 5.66244
sequence = TATGTAAATCGTTTACAAA

Site:
position = -175
score = 4.68118
sequence = ACCGTAAATTATTTTCACG

Gene: LSEI_0226: Gluconate utilization transcriptional regulator GntR1, RpiR family
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1157: Gluconate utilization transcriptional regulator GntR1, RpiR family
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -96
score = 5.7952
sequence = TATGTAAAATAATTACAAA

Site:
position = -63
score = 5.44662
sequence = TTCGTAAATAATTTTCAAT

Gene: LGG_00273: Gluconate utilization transcriptional regulator GntR1, RpiR family
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -70
score = 5.18665
sequence = ATAGAAAATTATTTTCGTA

Gene: LSA0296: Gluconate utilization transcriptional regulator GntR1, RpiR family
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -51
score = 5.13707
sequence = ATTGAAAATTGTTTTCTAA

Site:
position = -83
score = 6.13074
sequence = TATGAAAATAATTTACACA

Gene: LEUM_0550: Gluconate utilization transcriptional regulator GntR1, RpiR family
*
Oenococcus oeni PSU-1

Site:
position = -64
score = 5.35146
sequence = TATGTAATTTTTTTACTCA

Site:
position = -32
score = 5.63801
sequence = CGTGTAAAATATTTACATA

Gene: OEOE_1524: Gluconate utilization transcriptional regulator GntR1, RpiR family
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -101
score = 5.81172
sequence = TATGAAAATATGTTACATA

Site:
position = -69
score = 5.33059
sequence = CAAGAAAATTATTTTCTTA

Gene: PEPE_1363: Gluconate utilization transcriptional regulator GntR1, RpiR family
Gluconate utilization transcriptional regulator GntR1, RpiR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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