Regulog GntR1 - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	RpiR
Regulation mode:
Biological process:	Gluconate utilization
Effector:	Gluconate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - RpiR
By effector - Gluconate
By pathway - Gluconate utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	5	4
Lactobacillus casei ATCC 334	4	2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	3	1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG	4	2
Lactobacillus sakei subsp. sakei 23K	4	2
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	4	2
Oenococcus oeni PSU-1	2	2
Pediococcus pentosaceus ATCC 25745	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
gntZ	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -75 score = 6.25272 sequence = TATGTAAATTTTTTTCATA Site: position = -106 score = 4.77658 sequence = TTTGTAATTTTTTTACGGT Gene: LVIS_0144: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	* Lactobacillus casei ATCC 334 Site: position = -146 score = 4.68118 sequence = CGTGAAAATAATTTACGGT Site: position = -113 score = 5.66244 sequence = TTTGTAAACGATTTACATA Gene: LSEI_0227: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -109 score = 5.95275 sequence = AATGAAAATAATTTACAAA Site: position = -77 score = 5.09695 sequence = TATGTAAATAGTTTTATTA Gene: lp_1251: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -238 score = 5.44662 sequence = ATTGAAAATTATTTACGAA Site: position = -205 score = 5.7952 sequence = TTTGTAATTATTTTACATA Gene: LGG_00274: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	* Lactobacillus sakei subsp. sakei 23K Site: position = -96 score = 5.18665 sequence = TACGAAAATAATTTTCTAT Gene: LSA0297: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -97 score = 5.13707 sequence = TTAGAAAACAATTTTCAAT Site: position = -65 score = 6.13074 sequence = TGTGTAAATTATTTTCATA Gene: LEUM_0551: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	* Oenococcus oeni PSU-1 Site: position = -78 score = 5.63801 sequence = TATGTAAATATTTTACACG Site: position = -46 score = 5.35146 sequence = TGAGTAAAAAAATTACATA Gene: OEOE_1523: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	* Pediococcus pentosaceus ATCC 25745 Site: position = -98 score = 5.33059 sequence = TAAGAAAATAATTTTCTTG Site: position = -66 score = 5.81172 sequence = TATGTAACATATTTTCATA Gene: PEPE_1362: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
gntK	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -143 score = 5.2134 sequence = AGTGAAACTTTTTTACATA Site: position = -175 score = 5.16863 sequence = TTTGTAAACATTTTACAAC Gene: LVIS_1585: Gluconokinase (EC 2.7.1.12)	Lactobacillus casei ATCC 334 Gene: LSEI_0228: Gluconokinase (EC 2.7.1.12)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1250: Gluconokinase (EC 2.7.1.12)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00275: Gluconokinase (EC 2.7.1.12)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0298: Gluconokinase (EC 2.7.1.12)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0552: Gluconokinase (EC 2.7.1.12)	Oenococcus oeni PSU-1 Gene: OEOE_1421: Gluconokinase (EC 2.7.1.12)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1361: Gluconokinase (EC 2.7.1.12)	Gluconokinase (EC 2.7.1.12)
gntP	Lactobacillus acidophilus NCFM	2 Lactobacillus brevis ATCC 367* Site: position = -131 score = 4.56354 sequence = TTTGAAAATAACATTCAAT Site: position = -99 score = 5.66663 sequence = CTTGAAAATATTTTTCATA Gene: LVIS_1576: H+/gluconate symporter related permease Gene: LVIS_1586: H+/gluconate symporter related permease	Lactobacillus casei ATCC 334 Gene: LSEI_0229: H+/gluconate symporter related permease	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1249: H+/gluconate symporter related permease	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00277: H+/gluconate symporter related permease	Lactobacillus sakei subsp. sakei 23K Gene: LSA0299: H+/gluconate symporter related permease	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0553: H+/gluconate symporter related permease	Oenococcus oeni PSU-1 Gene: OEOE_1420: H+/gluconate symporter related permease	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1360: H+/gluconate symporter related permease	H+/gluconate symporter related permease

CRON 2.
gntR1	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -63 score = 5.16863 sequence = GTTGTAAAATGTTTACAAA Site: position = -95 score = 5.2134 sequence = TATGTAAAAAAGTTTCACT Gene: LVIS_1584: Gluconate utilization transcriptional regulator GntR1, RpiR family	* Lactobacillus casei ATCC 334 Site: position = -208 score = 5.66244 sequence = TATGTAAATCGTTTACAAA Site: position = -175 score = 4.68118 sequence = ACCGTAAATTATTTTCACG Gene: LSEI_0226: Gluconate utilization transcriptional regulator GntR1, RpiR family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1157: Gluconate utilization transcriptional regulator GntR1, RpiR family	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -96 score = 5.7952 sequence = TATGTAAAATAATTACAAA Site: position = -63 score = 5.44662 sequence = TTCGTAAATAATTTTCAAT Gene: LGG_00273: Gluconate utilization transcriptional regulator GntR1, RpiR family	* Lactobacillus sakei subsp. sakei 23K Site: position = -70 score = 5.18665 sequence = ATAGAAAATTATTTTCGTA Gene: LSA0296: Gluconate utilization transcriptional regulator GntR1, RpiR family	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -51 score = 5.13707 sequence = ATTGAAAATTGTTTTCTAA Site: position = -83 score = 6.13074 sequence = TATGAAAATAATTTACACA Gene: LEUM_0550: Gluconate utilization transcriptional regulator GntR1, RpiR family	* Oenococcus oeni PSU-1 Site: position = -64 score = 5.35146 sequence = TATGTAATTTTTTTACTCA Site: position = -32 score = 5.63801 sequence = CGTGTAAAATATTTACATA Gene: OEOE_1524: Gluconate utilization transcriptional regulator GntR1, RpiR family	* Pediococcus pentosaceus ATCC 25745 Site: position = -101 score = 5.81172 sequence = TATGAAAATATGTTACATA Site: position = -69 score = 5.33059 sequence = CAAGAAAATTATTTTCTTA Gene: PEPE_1363: Gluconate utilization transcriptional regulator GntR1, RpiR family	Gluconate utilization transcriptional regulator GntR1, RpiR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GntR1 - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --