Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GlnR regulog to Lactobacillus salivarius subsp. salivarius UCC118

Reference regulog properties
Source regulog: GlnR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus salivarius subsp. salivarius UCC118
Orthologous TF(s) LSL_0557
Regulated genes 5
Built upon 32 sites [see more]
Predicted regulatory interactions in Lactobacillus salivarius subsp. salivarius UCC118
Locus tag Position Score Sequence
Position: -44
Score: 4.6
Sequence: ATGAGATATATTTTAACAT
Locus tag: LSL_0062
LSL_0062 -44 4.6 ATGAGATATATTTTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnP
Ortholog function: Glutamine ABC transporter, permease and substrate-binding protein
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0581 -157 4.4 TTGTCACTTTATATAACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0062 -44 4.6 ATGAGATATATTTTAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1068 -34 5.8 ATGTTAGGTTATCTAACAT
Position: -94
Score: 5.4
Sequence: ATGTCATAAAAAGTTACAT
Position: -41
Score: 5.4
Sequence: ATGTTATAATTTTTGACAT
Locus tag: LSL_0235
LSL_0235 -94 5.4 ATGTCATAAAAAGTTACAT
-41 5.4 ATGTTATAATTTTTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Lactobacillus brevis ATCC 367 LVIS_0844 -177 5.3 ATGTCATAAAAATTAACAT
-42 6 GTGTTAGAATTCCTAACAT
Lactobacillus casei ATCC 334 LSEI_0653 -173 4.7 ATGTCACATAAGCTAACGC
Lactobacillus plantarum WCFS1 lp_0349 -46 6.2 ATGTTATAATTTCTAACAT
Lactobacillus rhamnosus GG LGG_00633 -174 5.4 ATGTTATATAAGCTGACGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0235 -94 5.4 ATGTCATAAAAAGTTACAT
-41 5.4 ATGTTATAATTTTTGACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0776 -89 5.3 ATGTAAGAAAAGCTACCAC
Oenococcus oeni PSU-1 OEOE_1679 -62 4.8 TTGTTATATTAGTTAACAC
Position: -83
Score: 5.4
Sequence: GTGTAAGAAAATATTACAT
Locus tag: LSL_0557
LSL_0557 -83 5.4 GTGTAAGAAAATATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Nitrogen metabolism transcriptional regulator, MerR family
Lactobacillus brevis ATCC 367 LVIS_0991 -82 6.3 ATGTCAGAAAACCTAACAT
Lactobacillus casei ATCC 334 LSEI_1653 -79 6 ATGTCAGAAAAGCTTACAT
Lactobacillus plantarum WCFS1 lp_1580 -82 5.4 GTGTGATATTTTCTAACAT
Lactobacillus rhamnosus GG LGG_01697 -79 6 ATGTAAGAAAACCTTACAT
Lactobacillus sakei subsp. sakei 23K LSA1322 -77 6.3 ATGTCAGAAAACCTAACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0557 -83 5.4 GTGTAAGAAAATATTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0716 -80 5.9 ATGTTAGAAAACCTGACAC
Oenococcus oeni PSU-1 OEOE_0951 -67 5.7 ATGTTAGCTTTCCTAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0738 -81 6.2 ATGTTAGAAAATGTAACAT
Position: -157
Score: 4.4
Sequence: TTGTCACTTTATATAACAT
Locus tag: LSL_0581
LSL_0581 -157 4.4 TTGTCACTTTATATAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnP
Ortholog function: Glutamine ABC transporter, permease and substrate-binding protein
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0581 -157 4.4 TTGTCACTTTATATAACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0062 -44 4.6 ATGAGATATATTTTAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1068 -34 5.8 ATGTTAGGTTATCTAACAT
Position: -201
Score: 5.4
Sequence: TTGTTAGATTTTCTAACAA
Locus tag: LSL_1446
LSL_1446 -201 5.4 TTGTTAGATTTTCTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gluQ
Ortholog function: Glutamate ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1775 -260 5.7 GTGTTAGAATTTATAACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1446 -201 5.4 TTGTTAGATTTTCTAACAA
-161 4.8 ATGTAACCTAATATAACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1936 -152 5.6 TTGTTATAAAACCTCACAT
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