Propagation of NagR regulog to Lactobacillus plantarum JDM1
| Source regulog: | NagR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus plantarum JDM1 |
| Orthologous TF(s) | JDM1_0460 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -60
Score: 5.1 Sequence: ATTTTAGTCTAGACCAATAT
Position: -39
Score: 5 Sequence: CAATTGGACTATACCAAACA
Locus tag: JDM1_0209
|
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| JDM1_0209 | -60 | 5.1 | ATTTTAGTCTAGACCAATAT | |
| -39 | 5 | CAATTGGACTATACCAAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0689 | -58 | 5.2 | AAATCGGTCTAGATCATTTA |
| -38 | 4.9 | CAATTGGACTATACCATTAG | ||
| Lactobacillus johnsonii NCC 533 | LJ1823 | -65 | 5.5 | TAATTTGACTAGACCAATTT |
| -37 | 5 | ATAATGGACTAGACCAATGA | ||
| Lactobacillus plantarum WCFS1 | lp_0226 | -60 | 5.1 | ATTTTAGTCTAGACCAATAT |
| -39 | 5 | CAATTGGACTATACCAAACA | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0417 | -55 | 5.2 | TAATTGGACTATACCAATGG |
|
Position: -55
Score: 5.2 Sequence: AGTTTGGTCTATACCGATTA
Locus tag: JDM1_0459
|
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| JDM1_0459 | -55 | 5.2 | AGTTTGGTCTATACCGATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagA | ||||
| Ortholog function: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0539 | -66 | 4.8 | TTTCTGGTCTATACCGATTA |
| Lactobacillus casei ATCC 334 | LSEI_1808 | -73 | 4.8 | ATCTTGGTCTATACCAGTTA |
| Lactobacillus plantarum WCFS1 | lp_0562 | -55 | 5.2 | AGTTTGGTCTATACCGATTA |
| Lactobacillus sakei subsp. sakei 23K | LSA1588 | -56 | 5.6 | TTTTTGGTCTATACCATTTA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1466 | -146 | 5.4 | GTTTTGGTCTATACCAATTA |
| -93 | 5.1 | TTCATGGTCTATACCATTTA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0425 | -82 | 5.9 | TAATAGGTCTAGACCAATTA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1528 | -57 | 5.1 | TTTTTGGTCTATACCGATAT |
|
Position: -213
Score: 4.3 Sequence: AGGTTAGACTAGACCAATTG
Locus tag: JDM1_0684
|
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| JDM1_0684 | -213 | 4.3 | AGGTTAGACTAGACCAATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glmS | ||||
| Ortholog function: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) | ||||
| Lactobacillus acidophilus NCFM | LBA0462 | -28 | 4.2 | ATATTGAACTAGACCAAAGG |
| Lactobacillus brevis ATCC 367 | LVIS_0687 | -106 | 5.1 | ATTTCAGTCTATACCAATTT |
| Lactobacillus casei ATCC 334 | LSEI_1019 | -159 | 5.3 | AAATTAATATAGACCAATAT |
| -48 | 5 | AAATCTGTCTAAACCAATTT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0440 | -29 | 4.5 | AAATTGAACTAGACCAAAGG |
| Lactobacillus fermentum IFO 3956 | LAF_0382 | -47 | 5.1 | GAATTTATCTATACCAATTT |
| Lactobacillus helveticus DPC 4571 | lhv_0491 | -131 | 5.1 | AAAATTGATTATACCAATTT |
| Lactobacillus johnsonii NCC 533 | LJ1581 | -130 | 5 | CTTTTGATATAGACCAATTA |
| Lactobacillus reuteri JCM 1112 | LAR_0405 | -134 | 4.6 | TAAATCATATAGACCAATCT |
| Lactobacillus rhamnosus GG | LGG_00983 | -47 | 4.5 | AAACCTGTCTAAACCAATTT |
| Lactobacillus sakei subsp. sakei 23K | LSA1355 | -114 | 5.4 | TAATTGAAATATACCAATAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1627 | -58 | 5 | ATCAAGGTCTATACCAATTT |
| Oenococcus oeni PSU-1 | OEOE_0635 | -113 | 4.8 | TTAATGGCCTATACCAATGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0478 | -124 | 5 | CATTTGATATATACCGATTT |
|
Position: -96
Score: 4.8 Sequence: CCAATGGACTATACCAATAA
Locus tag: JDM1_2378
|
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| JDM1_2378 | -96 | 4.8 | CCAATGGACTATACCAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagP | ||||
| Ortholog function: N-acetylglucosamine-specific PTS system, EIIABC component (EC 2.7.1.69) | ||||
| Lactobacillus plantarum WCFS1 | lp_2969 | -97 | 4.8 | CCAATGGACTATACCAATAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0060 | -150 | 5.1 | TATACGGTATAGACCAAAAT |
| -95 | 4.9 | TTAAAGGTCTATACCAACTA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1816 | -144 | 6.1 | TAATAGGTATATACCAATTT |
| -100 | 4.5 | AAAGCGGATTATACCAATAA | ||