Regulog AraR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Arabinose utilization
Effector:	Arabinose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 18 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By trascription factor - AraR
By TF family - GntR/Others
By effector - Arabinose
By pathway - Arabinose utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	4	1
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956	5	3
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	5	2
Lactobacillus reuteri JCM 1112	4	1
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K	3	1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	4	1
Oenococcus oeni PSU-1	1	1
Pediococcus pentosaceus ATCC 25745	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
araA	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1740: L-arabinose isomerase (EC 5.3.1.4)	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -105 score = 5.93927 sequence = TGAATTGTACGGACAAATAT Gene: LAF_1554: L-arabinose isomerase (EC 5.3.1.4)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_3554: L-arabinose isomerase (EC 5.3.1.4)	Lactobacillus reuteri JCM 1112 Gene: LAR_0470: L-arabinose isomerase (EC 5.3.1.4)	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA1856: L-arabinose isomerase (EC 5.3.1.4)	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -136 score = 5.69916 sequence = TGACTTATACGGACAAATGT Gene: LEUM_0852: L-arabinose isomerase (EC 5.3.1.4)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0165: L-arabinose isomerase (EC 5.3.1.4)	L-arabinose isomerase (EC 5.3.1.4)
araE	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -212 score = 4.44202 sequence = AAATTAATCCGAATAACAAA Site: position = -183 score = 6.14982 sequence = TGATTTATGCGTACAAATAT Gene: LVIS_1743: L-arabinose-proton symporter	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -153 score = 4.40856 sequence = ATATTGTTCAGTATAATTTA Gene: LAF_1555: L-arabinose-proton symporter	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -166 score = 6.49899 sequence = TGATTTATACGTATAAATAT Site: position = -195 score = 4.74142 sequence = TAATTTGTGCTGATAAAACA Gene: lp_3557: L-arabinose-proton symporter	* Lactobacillus reuteri JCM 1112 Site: position = -103 score = 6.35746 sequence = TGATTTATCCGTACAAATAT Gene: LAR_0467: L-arabinose-proton symporter	Lactobacillus rhamnosus GG	* Lactobacillus sakei subsp. sakei 23K Site: position = -250 score = 5.68574 sequence = ATAATTATTCGAATAAATAA Site: position = -150 score = 4.64194 sequence = ATATTGATTCGAATCAAAAA Site: position = -121 score = 4.65112 sequence = TGATTTATTCGAATGAAAGT Gene: LSA1860: L-arabinose-proton symporter	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0853: L-arabinose-proton symporter	Oenococcus oeni PSU-1	* Pediococcus pentosaceus ATCC 25745 Site: position = -121 score = 4.45335 sequence = AAATTCATCCTAACAAATTT Site: position = -89 score = 6.06911 sequence = TGACTTGTCCGTATAAATAT Gene: PEPE_0162: L-arabinose-proton symporter	L-arabinose-proton symporter
araK	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1742: Ribulokinase (EC 2.7.1.16)	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -77 score = 5.93377 sequence = TGATTTATACGGACAAAAAA Gene: LAF_1558: Ribulokinase (EC 2.7.1.16)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_3556: Ribulokinase (EC 2.7.1.16)	Lactobacillus reuteri JCM 1112 Gene: LAR_0468: Ribulokinase (EC 2.7.1.16)	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA1859: Ribulokinase (EC 2.7.1.16)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0854: Ribulokinase (EC 2.7.1.16)	* Oenococcus oeni PSU-1 Site: position = -149 score = 4.96613 sequence = TGATTTATATGTACGAATGT Site: position = -179 score = 5.02332 sequence = AAATTCATACGTAAAACTAA Site: position = -192 score = 4.53017 sequence = TTATTTTTACAAAAAATTCA Gene: OEOE_0227: Ribulokinase (EC 2.7.1.16)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0163: Ribulokinase (EC 2.7.1.16)	Ribulokinase (EC 2.7.1.16)
araD	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1741: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus casei ATCC 334 Gene: LSEI_2731: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1557: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_3555: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus reuteri JCM 1112 Gene: LAR_0469: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus rhamnosus GG Gene: LGG_02723: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus sakei subsp. sakei 23K Gene: LSA1857: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Lactobacillus salivarius subsp. salivarius UCC118	2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1992: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) Gene: LEUM_0855: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0164: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araR	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1744: Arabinoside utilization transcriptional repressor AraR, GntR family	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1556: Arabinoside utilization transcriptional repressor AraR, GntR family	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -234 score = 5.16295 sequence = TTATTGATGCGGATAAATTG Gene: lp_3558: Arabinoside utilization transcriptional repressor AraR, GntR family	Lactobacillus reuteri JCM 1112 Gene: LAR_0473: Arabinoside utilization transcriptional repressor AraR, GntR family	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA1861: Arabinoside utilization transcriptional repressor AraR, GntR family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0851: Arabinoside utilization transcriptional repressor AraR, GntR family	Oenococcus oeni PSU-1 Gene: OEOE_0226: Arabinoside utilization transcriptional repressor AraR, GntR family	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0157: Arabinoside utilization transcriptional repressor AraR, GntR family	Arabinoside utilization transcriptional repressor AraR, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AraR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --