Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NrdR regulog to Pediococcus pentosaceus ATCC 25745

Reference regulog properties
Source regulog: NrdR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Firmicutes
Propagated regulon:
Target genome Pediococcus pentosaceus ATCC 25745
Orthologous TF(s) PEPE_0691
Regulated genes 4
Built upon 81 sites [see more]
Predicted regulatory interactions in Pediococcus pentosaceus ATCC 25745
Locus tag Position Score Sequence
Position: -133
Score: 5.7
Sequence: ATACTATATATTGTAT
Locus tag: PEPE_0483
PEPE_0483 -133 5.7 ATACTATATATTGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mntH2
Ortholog function: Predicted manganese transport protein
Pediococcus pentosaceus ATCC 25745 PEPE_0483 -133 5.7 ATACTATATATTGTAT
Position: -83
Score: 5.2
Sequence: ATACAATATGTTGTGG
Locus tag: PEPE_0650
PEPE_0650 -83 5.2 ATACAATATGTTGTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dgk2
Ortholog function: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
Lactobacillus brevis ATCC 367 LVIS_1520 -41 3.6 GTACACTATATCTTGT
-39 5.7 ACACTATATCTTGTAT
Lactobacillus plantarum WCFS1 lp_1329 -72 3.9 AAAGTCTATATGGTAT
-40 5.1 ATACAATATATTGTGC
Lactobacillus reuteri JCM 1112 LAR_1221 -88 4.4 CCACCAAATATTGTAA
-56 5 CCACAATATTTTGTAG
Pediococcus pentosaceus ATCC 25745 PEPE_0650 -83 5.2 ATACAATATGTTGTGG
Position: -46
Score: 4.4
Sequence: GTACAATATGTAGTGC
Locus tag: PEPE_1437
PEPE_1437 -46 4.4 GTACAATATGTAGTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dgk1
Ortholog function: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
Lactobacillus brevis ATCC 367 LVIS_1711 -100 4.8 CCACGATATATTGTCT
-68 4.9 GTACAATATGTGGTGT
Lactobacillus plantarum WCFS1 lp_1011 -99 4.4 TCACCAGATATTGCAT
-67 5 GTACAATATGTAGTGT
Pediococcus pentosaceus ATCC 25745 PEPE_1437 -77 4.1 TTTCAAGATATTGTTT
-46 4.4 GTACAATATGTAGTGC
Position: -122
Score: 5.3
Sequence: GCACAATATATAGTGG
Locus tag: PEPE_1487
PEPE_1487 -122 5.3 GCACAATATATAGTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdH
Ortholog function: Glutaredoxin-like protein NrdH
Lactobacillus plantarum WCFS1 lp_0694 -86 4.6 ACCCTAGATGTTGTGT
-54 4.7 TCACCACATGTTGTAT
Pediococcus pentosaceus ATCC 25745 PEPE_1487 -122 5.3 GCACAATATATAGTGG
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