Propagation of CcpA regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog:	CcpA - Lactobacillaceae
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Carbon catabolism
Effector:	HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum:	Firmicutes
Propagated regulon:
Target genome	Lactobacillus fermentum IFO 3956
Orthologous TF(s)	LAF_0539
Regulated genes	36

Built upon 561 sites [see more]

Predicted regulatory interactions in *Lactobacillus fermentum IFO 3956*
	Locus tag	Position	Score	Sequence
Position: -62 Score: 4.3 Sequence: GAAAAAGCGGTTACAA Locus tag: LAF_0045
	LAF_0045	-62	4.3	GAAAAAGCGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM	LBA1632	-66	4.7	TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367	LVIS_0323	-150	4.9	TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334	LSEI_2278	-18	4.1	AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956	LAF_0045	-62	4.3	GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533	LJ0671	-44	4.6	AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1	lp_3092	-45	4	GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112	LAR_0033	-132	4.1	ATAAAAGGGCTTTTAT
		-30	4.6	ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1298	-37	4.3	ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745	PEPE_1821	-55	4.8	ATGAAAGCGTATTCTT

Position: -48 Score: 5 Sequence: TTGAAACCGTTATCAT Locus tag: LAF_0247
	LAF_0247	-48	5	TTGAAACCGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM	LBA1467	-47	5	ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367	LVIS_2259	-32	4.5	GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956	LAF_0247	-48	5	TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571	lhv_1549	-46	4.4	ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533	LJ0855	-45	4.4	ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1	lp_3483	-43	5	TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112	LAR_0276	-53	4.4	ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K	LSA1711	-37	4.9	ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0376	-32	4.5	ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745	PEPE_0205	-41	4.8	TTGTAAGCGTTTTATA

Position: -197 Score: 4.7 Sequence: TTGAAAACGCTTTCTC Locus tag: LAF_0277
	LAF_0277	-197	4.7	TTGAAAACGCTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM	LBA0461	-161	4.3	AAGCAAGCGCTTCCAT
Lactobacillus brevis ATCC 367	LVIS_0119	-173	4.4	CTGTATGCGCTTACAT
Lactobacillus fermentum IFO 3956	LAF_0277	-197	4.7	TTGAAAACGCTTTCTC
Lactobacillus johnsonii NCC 533	LJ1766	-162	4.5	ATGTAACCGATAACAT
Lactobacillus reuteri JCM 1112	LAR_0310	-132	4.8	TTGTAAGCGAATTCAT
Lactobacillus sakei subsp. sakei 23K	LSA0379	-74	4.5	TTACAAACGGTTTCAA

Position: -82 Score: 4.6 Sequence: TAGTAACCGCTTTTAT Locus tag: LAF_0297
	LAF_0297	-82	4.6	TAGTAACCGCTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbB
Ortholog function: Signal transduction response regulator
Lactobacillus fermentum IFO 3956	LAF_0297	-82	4.6	TAGTAACCGCTTTTAT

Position: -65 Score: 4.7 Sequence: TTGAAAACGCTTGCTA Locus tag: LAF_0298
	LAF_0298	-65	4.7	TTGAAAACGCTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Ornithine carbamoyltransferase (EC 2.1.3.3)
Lactobacillus fermentum IFO 3956	LAF_0298	-65	4.7	TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112	LAR_0419	-144	4.2	TTGTTTCCGCTTACAT
Pediococcus pentosaceus ATCC 25745	PEPE_1631	-119	5	ATGAAAACGTTTTAAA
		-55	4.5	GTGAAAGCGCTTGCTA

Position: -179 Score: 4.9 Sequence: TTGACAGCGCTTACAA Locus tag: LAF_0383
	LAF_0383	-179	4.9	TTGACAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367	LVIS_0695	-166	4.9	TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956	LAF_0383	-179	4.9	TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112	LAR_0406	-149	4.8	ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K	LSA0428	-174	4.8	TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1300	-200	4.3	TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745	PEPE_0479	-181	5.1	TTGTAAGCGTTATCAT

Position: -140 Score: 4.7 Sequence: TAGTAAGCGTTTACAG Locus tag: LAF_0391
	LAF_0391	-140	4.7	TAGTAAGCGTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM	LBA0452	-42	4.5	ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956	LAF_0391	-140	4.7	TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571	lhv_0480	-42	4.5	ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533	LJ0503	-106	4.4	ATGCAAGCATTTTCAA
		-68	4.1	AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1	lp_0575	1	4	TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K	LSA0449	-136	4.2	AGTAAAGCGTTTTAAA
		-57	4.6	TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0086	-109	4.3	TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0654	-131	4.3	TAGTAAGTGTTTTCAA
		-61	4.1	ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_1768	-100	4.7	ATGTAAACGGTAACAA
		-75	5.4	TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745	PEPE_1518	-146	4.5	TTGAAAGCGTTTTTTG

Position: -217 Score: 4.3 Sequence: TGGGAAGCGGTTTCTA Locus tag: LAF_0402
	LAF_0402	-217	4.3	TGGGAAGCGGTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Lactobacillus brevis ATCC 367	LVIS_0183	-91	3.9	GCGAAAACGCTTGCAT
Lactobacillus fermentum IFO 3956	LAF_0402	-217	4.3	TGGGAAGCGGTTTCTA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0130	-83	5	ATGAAAGCGTATACAA
Pediococcus pentosaceus ATCC 25745	PEPE_0187	-150	4.2	TTGTAAGCGAATACAC
		-129	4.4	ATGTCAACGCTTTTAT
		-107	4.7	TTGAAAACGCTTTACA

Position: -66 Score: 4.2 Sequence: ATGGAAACGTTATCGT Locus tag: LAF_0411
	LAF_0411	-66	4.2	ATGGAAACGTTATCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Lactobacillus acidophilus NCFM	LBA0752	-90	4.3	GTGAATGCGCTTATAA
Lactobacillus casei ATCC 334	LSEI_1126	-62	4	ATGAAACCACTCTCAT
Lactobacillus fermentum IFO 3956	LAF_1686	-63	4.4	GAGTTAGCGCTTTCAT
Lactobacillus fermentum IFO 3956	LAF_0411	-66	4.2	ATGGAAACGTTATCGT
Lactobacillus helveticus DPC 4571	lhv_0795	-14	4	TAGGAAGCGGATTTAT
Lactobacillus plantarum WCFS1	lp_2502	-77	3.8	GAGGAAGCGCTTTTCA
Lactobacillus reuteri JCM 1112	LAR_0415	-69	4.4	TTGAAACCGACTTCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0355	-37	5	TTGTAACCGATTTCAT
Oenococcus oeni PSU-1	OEOE_0636	-118	3.9	TTGGAAGCTATTCCAA

Position: -96 Score: 4.6 Sequence: GTGAAAACGGTTACTT Locus tag: LAF_0739
	LAF_0739	-96	4.6	GTGAAAACGGTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nplT
Ortholog function: Neopullulanase (EC 3.2.1.135)
Lactobacillus fermentum IFO 3956	LAF_0739	-96	4.6	GTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1	lp_3627	-73	4.5	ATGTAAGGGGTTACAT
Lactobacillus reuteri JCM 1112	LAR_0078	-130	4.9	ATGTAATCGTTTACAT

Position: -39 Score: 4.7 Sequence: ATGGAAGCGTATTCAA Locus tag: LAF_0741
	LAF_0741	-39	4.7	ATGGAAGCGTATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus brevis ATCC 367	LVIS_2191	-191	4.6	TTGAAAGCGGTAAAAA
Lactobacillus fermentum IFO 3956	LAF_0741	-39	4.7	ATGGAAGCGTATTCAA
Lactobacillus plantarum WCFS1	lp_3051	-36	4.7	ATGATAGCGATTACAA
Lactobacillus reuteri JCM 1112	LAR_0029	-39	4.4	ATGGAATCGTATTCAA
Lactobacillus sakei subsp. sakei 23K	LSA0122	-147	4.2	TTTGTAACGCTTTCAT
		-55	4.1	CGGTAAGCGTTATCAT
Pediococcus pentosaceus ATCC 25745	PEPE_0276	-104	4.1	ATAAAAACGTTTAACT
		-71	4.7	TTGTAAACGGATACAT
		-15	4	AAGAAGGCGTTTAAAA

Position: -92 Score: 4.2 Sequence: TCGTAATCGGTTTCAT Locus tag: LAF_0780
	LAF_0780	-92	4.2	TCGTAATCGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: Beta-galactosidase (EC 3.2.1.23)
Lactobacillus fermentum IFO 3956	LAF_0780	-92	4.2	TCGTAATCGGTTTCAT
Lactobacillus plantarum WCFS1	lp_3469	-177	4.2	AATAATACGCTTTCAT
		-66	4.6	ATGAAAGCGCTTATCA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_1064	-80	4.5	CTGTAAGCGCTTCCAT

Position: -31 Score: 4.6 Sequence: ATGTAAGCGCTACCAA Locus tag: LAF_0797
	LAF_0797	-31	4.6	ATGTAAGCGCTACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhX
Ortholog function: Zn conatining alcohol dehydrogenase
Lactobacillus fermentum IFO 3956	LAF_0797	-31	4.6	ATGTAAGCGCTACCAA
Lactobacillus plantarum WCFS1	lp_3054	-85	4.6	TTGTAAGCGCTTGAAT
		-41	4.5	TTGTAAGCGGTTTACA
Lactobacillus sakei subsp. sakei 23K	LSA0542	-66	4.3	TTGTAAACGATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1748	-31	4.4	TTGTAAACGATGTCAA
Pediococcus pentosaceus ATCC 25745	PEPE_0182	-75	4.8	TTGCAAACGCTTTCTT

Position: -125 Score: 4.5 Sequence: AAGAAACCGTTTACAG Locus tag: LAF_0868
	LAF_0868	-125	4.5	AAGAAACCGTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pyk
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Lactobacillus acidophilus NCFM	LBA0957	-134	4.2	ATGTAAGTGCTAACAT
Lactobacillus brevis ATCC 367	LVIS_0765	-181	4.1	CGGAAAACGCTTACTT
Lactobacillus fermentum IFO 3956	LAF_0868	-125	4.5	AAGAAACCGTTTACAG
Lactobacillus helveticus DPC 4571	lhv_1050	-136	4.2	ATGTAAGTGCTAACAT
Lactobacillus johnsonii NCC 533	LJ1080	-132	4.5	TTGAAAGCGAAAACAT
Lactobacillus reuteri JCM 1112	LAR_0722	-139	4.4	ATGATAGCGCTTTTTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0775	-169	4.6	GTGAAACCGTTATCAT
Pediococcus pentosaceus ATCC 25745	PEPE_1092	-116	4	AATAAAGCACTTACAT

Position: -65 Score: 5.4 Sequence: TTGAAAACGTTTTCAT Locus tag: LAF_0998
	LAF_0998	-65	5.4	TTGAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgB
Ortholog function: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Lactobacillus fermentum IFO 3956	LAF_0998	-111	4.6	TTGAAAACGATTTCGT
		-65	5.4	TTGAAAACGTTTTCAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0136	-140	4.3	TAGTAATCGTTTTCAC
		-33	5	ATGAAAACGTTTTAAA

Position: -279 Score: 4.1 Sequence: TTTTAAACGATTTCAC Position: -244 Score: 4.2 Sequence: ATGTAACGGCTTTCTT Position: -169 Score: 4.5 Sequence: ATGTAAGCGGTAACTT Locus tag: LAF_1140
	LAF_1140	-279	4.1	TTTTAAACGATTTCAC
		-244	4.2	ATGTAACGGCTTTCTT
		-169	4.5	ATGTAAGCGGTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367	LVIS_1410	-117	4.4	ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334	LSEI_1305	-111	4.2	AATAAAACGCTTGCAA
		-68	4.1	TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956	LAF_1140	-244	4.2	ATGTAACGGCTTTCTT
		-169	4.5	ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1	lp_2154	-118	4.1	TTGGAAGGGCTTGCAA
		-67	4.5	ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112	LAR_0608	-90	4.7	ATGAAAGCGCTTGTAT
		-40	4.3	AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG	LGG_01320	-111	4.2	AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K	LSA1085	-115	4	TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0153	-216	4	GTGATAACGATAACAA
		-67	4.5	TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0737	-31	4.9	GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1	OEOE_0328	-53	5.1	TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745	PEPE_1773	-107	4	TTTAAAACATTTTAAA
		-40	4.8	TAGAAAGCGCTTCCAT

Position: -36 Score: 4.4 Sequence: ATGTAAGCATATTCAT Locus tag: LAF_1176
	LAF_1176	-36	4.4	ATGTAAGCATATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcD
Ortholog function: Arginine/ornithine antiporter
Lactobacillus brevis ATCC 367	LVIS_2031	-40	4.5	ATCAAACCGCTTTCAT
Lactobacillus fermentum IFO 3956	LAF_1176	-36	4.4	ATGTAAGCATATTCAT
Lactobacillus reuteri JCM 1112	LAR_1455	-65	4.6	TTGAAGCCGCTTTCAA

Position: -108 Score: 3.9 Sequence: TATTTACCGCTTACAA Locus tag: LAF_1386
	LAF_1386	-108	3.9	TATTTACCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: Phosphotransferase system, HPr-related protein
Lactobacillus acidophilus NCFM	LBA0639	-111	4.4	ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	LBUL_0512	-108	4.7	ATGAAAACATTTACAA
Lactobacillus helveticus DPC 4571	lhv_0686	-109	4.4	ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533	LJ0816	-109	4.6	ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1	lp_1273	-135	4	ATGAAAGGGCTTGTAT
Lactobacillus reuteri JCM 1112	LAR_1256	-102	4	TATTTAACGCTTACAA
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0388	-91	4.1	TTGTTATCGTTTGCAT
		-68	4.2	ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_1780	-157	5.3	ATGTAAACGTTTTCAT
		-63	4.7	TTGTAAGCGCTTTGAT
Pediococcus pentosaceus ATCC 25745	PEPE_0609	-127	4	ATGTAAGGGCTTGCTT

Position: -100 Score: 4.3 Sequence: TGGTAAGCGTTTTATA Position: -76 Score: 4.4 Sequence: GTGAAATCGCTTACAG Locus tag: LAF_1555
	LAF_1555	-100	4.3	TGGTAAGCGTTTTATA
		-76	4.4	GTGAAATCGCTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Lactobacillus brevis ATCC 367	LVIS_1743	-79	4.4	TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956	LAF_1555	-100	4.3	TGGTAAGCGTTTTATA
		-76	4.4	GTGAAATCGCTTACAG
Lactobacillus plantarum WCFS1	lp_3557	-63	4.6	TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112	LAR_0467	-63	4.7	ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K	LSA1860	-78	4.7	TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0853	-104	5	TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745	PEPE_0162	-48	4.9	ATGAATACGCTTTCAA

Position: -111 Score: 4.6 Sequence: ATGAAAACGGTTTATT Locus tag: LAF_1558
	LAF_1558	-111	4.6	ATGAAAACGGTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Lactobacillus brevis ATCC 367	LVIS_1742	-79	4.4	TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956	LAF_1558	-111	4.6	ATGAAAACGGTTTATT
Lactobacillus plantarum WCFS1	lp_3556	-63	4.6	TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112	LAR_0468	-63	4.7	ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K	LSA1859	-78	4.7	TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0854	-104	5	TTGTAAGCGTTTCCAA
Oenococcus oeni PSU-1	OEOE_0227	-218	4.3	ATTTAAACGGTTTTAT
		-116	4.4	GTGTAAGCACTTACAA
Pediococcus pentosaceus ATCC 25745	PEPE_0163	-48	4.9	ATGAATACGCTTTCAA

Position: -126 Score: 4.4 Sequence: TTGGCAGCGATTTCAA Position: -57 Score: 4.5 Sequence: AGAAAAGCGCTTACAA Locus tag: LAF_1578
	LAF_1578	-126	4.4	TTGGCAGCGATTTCAA
		-57	4.5	AGAAAAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM	LBA0401	-219	4.7	ATGTAAGCGTTATCTT
		-30	4.9	ATAAAAGCGTTTACAT
Lactobacillus fermentum IFO 3956	LAF_1578	-126	4.4	TTGGCAGCGATTTCAA
		-57	4.5	AGAAAAGCGCTTACAA
Lactobacillus johnsonii NCC 533	LJ0519	-214	4.6	ATGTAAACGCATTCTT
		-37	4.4	TTTAAAACGCTTACAC
Lactobacillus plantarum WCFS1	lp_0185	-212	4.3	ATAAAACCGCTTACAC
		-157	4	ATGTCAGCGTTTCAAA
		-58	4.1	TGTAAAGCGCTTGCAT
Lactobacillus sakei subsp. sakei 23K	LSA1792	-183	4.2	ATGTAAACGTTTGATA
		-54	4.5	TGAAAAGCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0066	-52	4.2	CATTAAGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745	PEPE_0518	-212	4.3	ATAAAACCGCTTACAC
		-157	4	ATGTCAGCGTTTCAAA
		-58	4.1	TGTAAAGCGCTTGCAT

Position: -35 Score: 4 Sequence: ATGTAAGGGCTATCCA Locus tag: LAF_1646
	LAF_1646	-35	4	ATGTAAGGGCTATCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaA
Ortholog function: Pantothenate kinase (EC 2.7.1.33)
Lactobacillus fermentum IFO 3956	LAF_1646	-35	4	ATGTAAGGGCTATCCA
Lactobacillus plantarum WCFS1	lp_0913	-61	4.2	TTGATAAGGGTTTCAT
Lactobacillus reuteri JCM 1112	LAR_1512	-44	4.6	GAGTAACCGTTTTCAT
Lactobacillus sakei subsp. sakei 23K	LSA0138	-44	3.8	ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1538	-75	4.2	TTGAAAGCGTAATATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_1881	-107	4.1	TTGTATACTGTTTCAT

Position: -40 Score: 4.6 Sequence: TGGAAAACGCTTACTA Locus tag: LAF_1662
	LAF_1662	-40	4.6	TGGAAAACGCTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galM
Ortholog function: Aldose 1-epimerase (EC 5.1.3.3); Galactose mutarotase and related enzymes
Lactobacillus fermentum IFO 3956	LAF_1662	-40	4.6	TGGAAAACGCTTACTA
Lactobacillus reuteri JCM 1112	LAR_1448	-33	4.4	GTAAAAGCGCTTACTT

Position: -63 Score: 4.4 Sequence: GAGTTAGCGCTTTCAT Position: 0 Score: 4.2 Sequence: ATGGAAACGTTATCGT Locus tag: LAF_1686
	LAF_1686	-63	4.4	GAGTTAGCGCTTTCAT
		0	4.2	ATGGAAACGTTATCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Lactobacillus acidophilus NCFM	LBA0752	-90	4.3	GTGAATGCGCTTATAA
Lactobacillus casei ATCC 334	LSEI_1126	-62	4	ATGAAACCACTCTCAT
Lactobacillus fermentum IFO 3956	LAF_1686	-63	4.4	GAGTTAGCGCTTTCAT
Lactobacillus fermentum IFO 3956	LAF_0411	-66	4.2	ATGGAAACGTTATCGT
Lactobacillus helveticus DPC 4571	lhv_0795	-14	4	TAGGAAGCGGATTTAT
Lactobacillus plantarum WCFS1	lp_2502	-77	3.8	GAGGAAGCGCTTTTCA
Lactobacillus reuteri JCM 1112	LAR_0415	-69	4.4	TTGAAACCGACTTCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0355	-37	5	TTGTAACCGATTTCAT
Oenococcus oeni PSU-1	OEOE_0636	-118	3.9	TTGGAAGCTATTCCAA

Position: -91 Score: 4.3 Sequence: TTGTAACCGGTTTACA Locus tag: LAF_1689
	LAF_1689	-91	4.3	TTGTAACCGGTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM	LBA1485	-101	4.7	TTGAAAGCGATTACAC
Lactobacillus fermentum IFO 3956	LAF_1738	-158	4.3	TAGCAAACGCTTGCAT
		-103	4.5	TTGCAACCGCTTTCCT
Lactobacillus fermentum IFO 3956	LAF_1689	-91	4.3	TTGTAACCGGTTTACA
Lactobacillus fermentum IFO 3956	LAF_1738	-158	4.3	TAGCAAACGCTTGCAT
		-103	4.5	TTGCAACCGCTTTCCT
Lactobacillus reuteri JCM 1112	LAR_0399	-135	4.4	TGAAAAGCGATTTCAA
		-76	4.5	TTGTAATCACTTTCAA
Lactobacillus reuteri JCM 1112	LAR_0399	-135	4.4	TGAAAAGCGATTTCAA
		-76	4.5	TTGTAATCACTTTCAA

Position: -327 Score: 4.2 Sequence: TTGTTGACGTTTTCAA Locus tag: LAF_1725
	LAF_1725	-327	4.2	TTGTTGACGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Lactobacillus acidophilus NCFM	LBA0588	-61	4.1	TTGGATGCGTTTTTTT
Lactobacillus sakei subsp. sakei 23K	LSA1685	-65	4.4	TTTAAAGCGCTTTTTT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1806	-18	4.1	TTGAAAGGGGTATAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_0793	-76	5.1	ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1	OEOE_1611	-110	4.7	TTGAAAGTGTTTTCAA

Position: -119 Score: 4.3 Sequence: TTTGAACCGGTTACAT Position: -105 Score: 4.1 Sequence: ATGCAACCGCTTAATA Position: -73 Score: 4.2 Sequence: ATGATAACGGTTTATA Locus tag: LAF_1735
	LAF_1735	-119	4.3	TTTGAACCGGTTACAT
		-105	4.1	ATGCAACCGCTTAATA
		-73	4.2	ATGATAACGGTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsI
Ortholog function: Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)
Lactobacillus acidophilus NCFM	LBA0640	-111	4.4	ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	LBUL_0513	-108	4.7	ATGAAAACATTTACAA
Lactobacillus fermentum IFO 3956	LAF_1735	-119	4.3	TTTGAACCGGTTACAT
		-73	4.2	ATGATAACGGTTTATA
Lactobacillus helveticus DPC 4571	lhv_0687	-109	4.4	ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533	LJ0817	-109	4.6	ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1	lp_1274	-135	4	ATGAAAGGGCTTGTAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_0389	-91	4.1	TTGTTATCGTTTGCAT
		-68	4.2	ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	LEUM_1779	-157	5.3	ATGTAAACGTTTTCAT
		-63	4.7	TTGTAAGCGCTTTGAT
Oenococcus oeni PSU-1	OEOE_0647	-164	4.7	TTGAAAACAGTTTCAA
		-82	4.5	TTGAAAACGATTTTTT
Pediococcus pentosaceus ATCC 25745	PEPE_0610	-127	4	ATGTAAGGGCTTGCTT

Position: -158 Score: 4.3 Sequence: TAGCAAACGCTTGCAT Position: -103 Score: 4.5 Sequence: TTGCAACCGCTTTCCT Locus tag: LAF_1738
	LAF_1738	-158	4.3	TAGCAAACGCTTGCAT
		-103	4.5	TTGCAACCGCTTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM	LBA1485	-101	4.7	TTGAAAGCGATTACAC
Lactobacillus fermentum IFO 3956	LAF_1738	-158	4.3	TAGCAAACGCTTGCAT
		-103	4.5	TTGCAACCGCTTTCCT
Lactobacillus fermentum IFO 3956	LAF_1689	-91	4.3	TTGTAACCGGTTTACA
Lactobacillus fermentum IFO 3956	LAF_1738	-158	4.3	TAGCAAACGCTTGCAT
		-103	4.5	TTGCAACCGCTTTCCT
Lactobacillus reuteri JCM 1112	LAR_0399	-135	4.4	TGAAAAGCGATTTCAA
		-76	4.5	TTGTAATCACTTTCAA
Lactobacillus reuteri JCM 1112	LAR_0399	-135	4.4	TGAAAAGCGATTTCAA
		-76	4.5	TTGTAATCACTTTCAA

Position: -99 Score: 4.1 Sequence: ATGTAAGCGCTCTATT Locus tag: LAF_1792
	LAF_1792	-99	4.1	ATGTAAGCGCTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus acidophilus NCFM	LBA1459	-36	4.3	CTGAAAACGATTACAG
Lactobacillus brevis ATCC 367	LVIS_1904	-98	4.7	ATGAAAACGTTTTATA
Lactobacillus fermentum IFO 3956	LAF_1792	-99	4.1	ATGTAAGCGCTCTATT
Lactobacillus helveticus DPC 4571	lhv_1501	-37	4.8	TTGAAAACGATTACAG
Lactobacillus johnsonii NCC 533	LJ0859	-36	5.1	ATGAAAACGATTACAA
Lactobacillus reuteri JCM 1112	LAR_1662	-125	4.5	GTGTAATCGTTTTCTT
		-93	4.4	TTGTAAGCGCTTATTG

Position: -119 Score: 4.8 Sequence: ATGAAACCGGTTTAAA Locus tag: LAF_1823
	LAF_1823	-119	4.8	ATGAAACCGGTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism regulator ArgR
Lactobacillus fermentum IFO 3956	LAF_1823	-119	4.8	ATGAAACCGGTTTAAA
Lactobacillus reuteri JCM 1112	LAR_0436	-72	4.7	TTGACAACGTTTACAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcpA regulog to Lactobacillus fermentum IFO 3956

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --