Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GalR regulog to Lactobacillus reuteri JCM 1112

Reference regulog properties
Source regulog: GalR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Galactosides utilization; Galactose utilization
Effector: Galactose
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus reuteri JCM 1112
Orthologous TF(s) LAR_1660, LAR_0856
Regulated genes 4
Built upon 30 sites [see more]
Predicted regulatory interactions in Lactobacillus reuteri JCM 1112
Locus tag Position Score Sequence
Position: -95
Score: 4.9
Sequence: AAAATTTACGTAAATTTTA
Locus tag: LAR_0276
LAR_0276 -95 4.9 AAAATTTACGTAAATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus fermentum IFO 3956 LAF_0247 -91 5.5 TAATATTTACTAAACTTTT
Lactobacillus plantarum WCFS1 lp_3483 -266 5.9 ATAGTTTTACTAAAATTTT
Lactobacillus reuteri JCM 1112 LAR_0276 -95 4.9 AAAATTTACGTAAATTTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -86 5.5 AATATTTTAGTAAAAAGTA
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -266 6.2 ATAATTTTACTAAAATTTT
-94 5.1 AAATTTTAACTAAAACAAC
Position: -54
Score: 5.5
Sequence: AAACGTTTACTAAAAATAT
Locus tag: LAR_0856
LAR_0856 -54 5.5 AAACGTTTACTAAAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galR
Ortholog function: Galactose utilization transcriptional regulator GalR, LacI family
Lactobacillus reuteri JCM 1112 LAR_0856 -54 5.5 AAACGTTTACTAAAAATAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0881 -106 5.1 TACTTTTTAGTAAATATTT
Position: -128
Score: 5.4
Sequence: ATATTTTTAGTAAACGTTT
Locus tag: LAR_0857
LAR_0857 -128 5.4 ATATTTTTAGTAAACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: melA
Ortholog function: Alpha-galactosidase (EC 3.2.1.22)
Lactobacillus plantarum WCFS1 lp_3485 -88 5.7 CAAATTTTACTAAAAATCA
Lactobacillus reuteri JCM 1112 LAR_0857 -128 5.4 ATATTTTTAGTAAACGTTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0882 -106 5.1 TACTTTTTAGTAAATATTT
Position: -53
Score: 4.9
Sequence: TTGTATTTAGTAAAAGTTT
Locus tag: LAR_1662
LAR_1662 -53 4.9 TTGTATTTAGTAAAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus brevis ATCC 367 LVIS_1904 -38 5.9 AAAACTTTACTAAAAATTT
Lactobacillus plantarum WCFS1 lp_3482 -36 6 AAAATTTTAGTAAAACTAT
Lactobacillus reuteri JCM 1112 LAR_1662 -53 4.9 TTGTATTTAGTAAAAGTTT
Oenococcus oeni PSU-1 OEOE_0304 -231 5.5 AATATTTTAGTAAAGATTT
Pediococcus pentosaceus ATCC 25745 PEPE_0206 -193 5.2 AAAATTTAACCAAAATTAA
-33 6.3 AAAATTTTAGTAAAATTAT
© 2009-2020 RegPrecise