Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus sakei subsp. sakei 23K

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus sakei subsp. sakei 23K
Orthologous TF(s) LSA0415
Regulated genes 33
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus sakei subsp. sakei 23K
Locus tag Position Score Sequence
Position: -42
Score: 4.3
Sequence: TTGTAAGCGTAGTCAA
Locus tag: LSA0067
LSA0067 -42 4.3 TTGTAAGCGTAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptcA
Ortholog function: Putrescine carbamoyltransferase (EC 2.1.3.6)
Lactobacillus brevis ATCC 367 LVIS_2210 -96 4.3 TTGGAAACGCTTCCCA
Lactobacillus sakei subsp. sakei 23K LSA0067 -42 4.3 TTGTAAGCGTAGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0189 -83 4.5 TTGGAAACGCTTTATT
Position: -147
Score: 4.2
Sequence: TTTGTAACGCTTTCAT
Locus tag: LSA0122
LSA0122 -147 4.2 TTTGTAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus brevis ATCC 367 LVIS_2191 -191 4.6 TTGAAAGCGGTAAAAA
Lactobacillus fermentum IFO 3956 LAF_0741 -39 4.7 ATGGAAGCGTATTCAA
Lactobacillus plantarum WCFS1 lp_3051 -36 4.7 ATGATAGCGATTACAA
Lactobacillus reuteri JCM 1112 LAR_0029 -39 4.4 ATGGAATCGTATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -147 4.2 TTTGTAACGCTTTCAT
-55 4.1 CGGTAAGCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0276 -104 4.1 ATAAAAACGTTTAACT
-71 4.7 TTGTAAACGGATACAT
-15 4 AAGAAGGCGTTTAAAA
Position: -44
Score: 3.8
Sequence: ATGTAACCGTTTAGCA
Locus tag: LSA0138
LSA0138 -44 3.8 ATGTAACCGTTTAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaA
Ortholog function: Pantothenate kinase (EC 2.7.1.33)
Lactobacillus fermentum IFO 3956 LAF_1646 -35 4 ATGTAAGGGCTATCCA
Lactobacillus plantarum WCFS1 lp_0913 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus reuteri JCM 1112 LAR_1512 -44 4.6 GAGTAACCGTTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0138 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1538 -75 4.2 TTGAAAGCGTAATATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1881 -107 4.1 TTGTATACTGTTTCAT
Position: -114
Score: 4.3
Sequence: TGTAAACCGTTTTCAA
Locus tag: LSA0200
LSA0200 -114 4.3 TGTAAACCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsU
Ortholog function: Ribose uptake protein RbsU (TC 2.A.7.5)
Lactobacillus plantarum WCFS1 lp_3658 -72 4.9 ATTAAAACGTTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0200 -114 4.3 TGTAAACCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1697 -65 4.9 ATTAAAACGTTTTCAT
Position: -45
Score: 4.5
Sequence: ATGTAACCGATTGCAT
Locus tag: LSA0260
LSA0260 -45 4.5 ATGTAACCGATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yghZ
Ortholog function: Predicted oxidoreductase, aryl-alcohol dehydrogenase related
Lactobacillus plantarum WCFS1 lp_3489 -49 4.6 ATGAAAGCGGTAACTT
Lactobacillus sakei subsp. sakei 23K LSA0260 -45 4.5 ATGTAACCGATTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1315 -77 4.8 AGGTAAGCGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0112 -45 4.7 ATGAAAGCGGTATCTT
Position: -36
Score: 4.5
Sequence: ATGTAAACGCAAACAA
Locus tag: LSA0299
LSA0299 -36 4.5 ATGTAAACGCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: H+/gluconate symporter related permease
Lactobacillus brevis ATCC 367 LVIS_1586 -19 4.5 ATGAAAGGGCTTACTT
Lactobacillus casei ATCC 334 LSEI_0229 -43 4.9 TTGTAAGCGATTTCTT
Lactobacillus rhamnosus GG LGG_00277 -194 4.7 TTGTAAGCGGTTTCTG
Lactobacillus sakei subsp. sakei 23K LSA0299 -36 4.5 ATGTAAACGCAAACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1360 -35 4.7 AAGAAAGCGGTTACTT
Position: -139
Score: 4.8
Sequence: AAGTAAGCGCTATCAA
Locus tag: LSA0370
LSA0370 -139 4.8 AAGTAAGCGCTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Lactobacillus fermentum IFO 3956 LAF_0300 -65 4.7 TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112 LAR_0435 -72 4.7 TTGACAACGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1629 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Position: -74
Score: 4.5
Sequence: TTACAAACGGTTTCAA
Locus tag: LSA0379
LSA0379 -74 4.5 TTACAAACGGTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -161 4.3 AAGCAAGCGCTTCCAT
Lactobacillus brevis ATCC 367 LVIS_0119 -173 4.4 CTGTATGCGCTTACAT
Lactobacillus fermentum IFO 3956 LAF_0277 -197 4.7 TTGAAAACGCTTTCTC
Lactobacillus johnsonii NCC 533 LJ1766 -162 4.5 ATGTAACCGATAACAT
Lactobacillus reuteri JCM 1112 LAR_0310 -132 4.8 TTGTAAGCGAATTCAT
Lactobacillus sakei subsp. sakei 23K LSA0379 -74 4.5 TTACAAACGGTTTCAA
Position: -120
Score: 4.1
Sequence: ATGCAAGCGGTTTACA
Locus tag: LSA0414
LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -170
Score: 3.9
Sequence: ATGTAAACGTTAATGT
Position: -112
Score: 3.9
Sequence: TGTAAACCGCTTGCAT
Locus tag: LSA0415
LSA0415 -170 3.9 ATGTAAACGTTAATGT
-112 3.9 TGTAAACCGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -174
Score: 4.8
Sequence: TTGACAACGCTTACAT
Locus tag: LSA0428
LSA0428 -174 4.8 TTGACAACGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956 LAF_0383 -179 4.9 TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112 LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0428 -174 4.8 TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1300 -200 4.3 TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Position: -228
Score: 4
Sequence: ATGAAAACGGATAACA
Position: -136
Score: 4.2
Sequence: AGTAAAGCGTTTTAAA
Position: -57
Score: 4.6
Sequence: TTGTTAGCGTTTTTAT
Locus tag: LSA0449
LSA0449 -228 4 ATGAAAACGGATAACA
-136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -66
Score: 4.3
Sequence: TTGTAAACGATTCTAA
Locus tag: LSA0542
LSA0542 -66 4.3 TTGTAAACGATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhX
Ortholog function: Zn conatining alcohol dehydrogenase
Lactobacillus fermentum IFO 3956 LAF_0797 -31 4.6 ATGTAAGCGCTACCAA
Lactobacillus plantarum WCFS1 lp_3054 -85 4.6 TTGTAAGCGCTTGAAT
-41 4.5 TTGTAAGCGGTTTACA
Lactobacillus sakei subsp. sakei 23K LSA0542 -66 4.3 TTGTAAACGATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1748 -31 4.4 TTGTAAACGATGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0182 -75 4.8 TTGCAAACGCTTTCTT
Position: -103
Score: 3.7
Sequence: CGGTAAACGCTATAAA
Locus tag: LSA0575
LSA0575 -103 3.7 CGGTAAACGCTATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcaD
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus acidophilus NCFM LBA1401 -52 4.4 ATGAAAGAGGTTACAA
Lactobacillus plantarum WCFS1 lp_2544 -200 4.3 TTGTAACCGTTTTAGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0137 -56 3.8 GTGAAAACGTTCTATA
Pediococcus pentosaceus ATCC 25745 PEPE_1619 -81 4.7 TTATAAGCGTTTTAAT
-66 4.1 TTGTAAGCGGTTCACA
Position: -43
Score: 4.3
Sequence: AAGGAAACGTTTTCCA
Locus tag: LSA0649
LSA0649 -43 4.3 AAGGAAACGTTTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus brevis ATCC 367 LVIS_0238 -46 4.3 TTGGAACCGGTTTCGT
Lactobacillus sakei subsp. sakei 23K LSA0649 -43 4.3 AAGGAAACGTTTTCCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0110 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Position: -31
Score: 4.5
Sequence: ATGAAAGCGATTAATA
Locus tag: LSA0764
LSA0764 -31 4.5 ATGAAAGCGATTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus sakei subsp. sakei 23K LSA0764 -31 4.5 ATGAAAGCGATTAATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0381 -44 4.3 AATAAAACGTTTTCTT
Position: -20
Score: 4.3
Sequence: ATGAAAGGGGTTTTAT
Locus tag: LSA0934
LSA0934 -20 4.3 ATGAAAGGGGTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplA1
Ortholog function: Lipoate-protein ligase A
Lactobacillus brevis ATCC 367 LVIS_0180 -101 4.7 TTGTAATCGATTACAA
Lactobacillus casei ATCC 334 LSEI_1473 -101 4.1 TCGAAATCGCTTTCTT
Lactobacillus fermentum IFO 3956 LAF_1136 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus reuteri JCM 1112 LAR_1565 -104 4.7 TTGCAAACGCTTACTA
Lactobacillus rhamnosus GG LGG_01479 -150 4.1 TCGAAATCGCTTTCTT
Lactobacillus sakei subsp. sakei 23K LSA0934 -20 4.3 ATGAAAGGGGTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0157 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Position: -130
Score: 4
Sequence: ATGAAAACCTTTACAC
Position: -40
Score: 4.3
Sequence: TTGTAAACGATGACAT
Locus tag: LSA1048
LSA1048 -130 4 ATGAAAACCTTTACAC
-40 4.3 TTGTAAACGATGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family
Lactobacillus acidophilus NCFM LBA1779 -37 4.2 GAGAAAGCGAATACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1889 -164 4 GAGAAAGCCTTTACAA
Lactobacillus helveticus DPC 4571 lhv_1846 12 4.3 GAGAAAGCGGATACAA
Lactobacillus johnsonii NCC 533 LJ0570 -40 4.1 CTGAAAGCGTTTATCA
Lactobacillus plantarum WCFS1 lp_2095 -6 4.3 TTGAAAGTGCTTACAG
Lactobacillus sakei subsp. sakei 23K LSA1048 -130 4 ATGAAAACCTTTACAC
-40 4.3 TTGTAAACGATGACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1166 -6 4.3 ATGAAAGTGCTTACAG
Position: -115
Score: 4
Sequence: TGTAAAACGCTTGCAT
Locus tag: LSA1085
LSA1085 -115 4 TGTAAAACGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -74
Score: 3.9
Sequence: TGAAAAGCGTTCTCAT
Locus tag: LSA1113
LSA1113 -74 3.9 TGAAAAGCGTTCTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufC
Ortholog function: Iron-sulfur cluster assembly ATPase protein
Lactobacillus plantarum WCFS1 lp_1468 -186 4.5 ATGAAAGGGCTTTTAT
-138 4.3 ATGAAAACGGTTATAC
Lactobacillus sakei subsp. sakei 23K LSA1113 -74 3.9 TGAAAAGCGTTCTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1881 -181 4.2 ATGTAAGCGTTATTCT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2038 29 4.4 GAGAAAACGCTTAAAA
Position: -99
Score: 4.1
Sequence: ACGAAATCGCTTTAAA
Locus tag: LSA1146
LSA1146 -99 4.1 ACGAAATCGCTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pmi
Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Lactobacillus acidophilus NCFM LBA0745 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus brevis ATCC 367 LVIS_1656 -86 4.8 TAGAAAGCGCTTGCAA
Lactobacillus helveticus DPC 4571 lhv_0789 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus johnsonii NCC 533 LJ0916 -60 4.6 TTGAAAGTGGTTTCAA
Lactobacillus sakei subsp. sakei 23K LSA1146 -99 4.1 ACGAAATCGCTTTAAA
Oenococcus oeni PSU-1 OEOE_0249 -30 4.9 ATGATAACGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1334 -21 4.3 ATGAAAGGGGTTTTAT
Position: -95
Score: 4.1
Sequence: ATAAAAGGGCTTTAAT
Locus tag: LSA1170
LSA1170 -95 4.1 ATAAAAGGGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF2
Ortholog function: Glycerol uptake facilitator protein
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0058 -132 4.7 ATAAAAGCGCATTCAT
Lactobacillus plantarum WCFS1 lp_3436 -104 4.3 TAGAAACCGCTTATTT
-82 4.6 AATAAAGCGTTTACAT
Lactobacillus sakei subsp. sakei 23K LSA1170 -95 4.1 ATAAAAGGGCTTTAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1392 -292 3.9 TTTCAAGCGCTTCAAT
Oenococcus oeni PSU-1 OEOE_0349 -104 4.3 TAGAAACCGCTTATTT
-82 4.5 AATAAAACGTTTACAT
Position: -89
Score: 4.8
Sequence: TTGTAATCGATTTCAA
Locus tag: LSA1188
LSA1188 -89 4.8 TTGTAATCGATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus plantarum WCFS1 lp_2629 -41 4.1 ACGAAAACGTATACAA
Lactobacillus sakei subsp. sakei 23K LSA1188 -89 4.8 TTGTAATCGATTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1372 -53 4.6 AAGAAAACGTTTGCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1252 -38 4.6 ACGAAAACGTTTTCAA
Position: -105
Score: 4.4
Sequence: TTGTAAACGGTTCAAA
Locus tag: LSA1200
LSA1200 -105 4.4 TTGTAAACGGTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA1012 -96 4.3 TTGTGATCGCTTTCAA
-29 4.8 ATGAAAACGCTTTATA
Lactobacillus casei ATCC 334 LSEI_0631 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0760 -104 4.4 AAGTAAGCTTTTTCAT
-36 4.5 ATGAAAGCGGATACTT
Lactobacillus plantarum WCFS1 lp_3240 -118 4.8 AAGAAAGCGCTTTTAT
Lactobacillus plantarum WCFS1 lp_0264 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00603 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1200 -105 4.4 TTGTAAACGGTTCAAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1512 -96 4.5 TTGTAAACAATTTCAT
-27 4.1 AAGAAAAGGTTTTCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0507 -86 5.1 TTGTAACCGTTTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0508 -86 5.1 TTGTAACCGTTTACAT
Oenococcus oeni PSU-1 OEOE_1342 -96 4.5 TTGAAAACGCTTTATG
Oenococcus oeni PSU-1 OEOE_1341 -96 4.5 TTGAAAACGCTTTATG
Pediococcus pentosaceus ATCC 25745 PEPE_1804 -199 4.6 TTAGAAACGCTTACAT
-56 4.7 TAGCAAGCGCTTACAA
Position: -145
Score: 4.2
Sequence: GTAAAAGCGCTTTCTG
Position: -82
Score: 4.4
Sequence: TTTGAACCGTTTACAA
Locus tag: LSA1201
LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -65
Score: 4.4
Sequence: TTTAAAGCGCTTTTTT
Locus tag: LSA1685
LSA1685 -65 4.4 TTTAAAGCGCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Lactobacillus acidophilus NCFM LBA0588 -61 4.1 TTGGATGCGTTTTTTT
Lactobacillus sakei subsp. sakei 23K LSA1685 -65 4.4 TTTAAAGCGCTTTTTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1806 -18 4.1 TTGAAAGGGGTATAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0793 -76 5.1 ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_1611 -110 4.7 TTGAAAGTGTTTTCAA
Position: -39
Score: 4.8
Sequence: ATGGAAACGATTTCAA
Locus tag: LSA1702
LSA1702 -39 4.8 ATGGAAACGATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhA
Ortholog function: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
Lactobacillus brevis ATCC 367 LVIS_0254 -90 4.2 ATGTAAGCGCTTACGC
Lactobacillus sakei subsp. sakei 23K LSA1702 -39 4.8 ATGGAAACGATTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1919 -16 3.8 AAGAAAGAGGTTAAAA
Oenococcus oeni PSU-1 OEOE_0527 -229 4.2 AAGTAAGCGCTTCCAC
Position: -37
Score: 4.9
Sequence: ATGAAACCGTTTTAAT
Locus tag: LSA1711
LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Position: 15
Score: 4.3
Sequence: ATGAAAACGCTATCCG
Locus tag: LSA1778
LSA1778 15 4.3 ATGAAAACGCTATCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
Lactobacillus casei ATCC 334 LSEI_2045 -81 4.3 CTGAAACCGTATACAA
-14 4.1 AAGGAAGCTGTTTCAT
Lactobacillus rhamnosus GG LGG_02032 -82 4.8 TTGAAACCGTATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0144 -75 4.9 TTGTAAGCGGTTTTAT
Position: -183
Score: 4.2
Sequence: ATGTAAACGTTTGATA
Position: -79
Score: 4.3
Sequence: ATGTAAACGGTTGTAT
Position: -54
Score: 4.5
Sequence: TGAAAAGCGTTTACAA
Locus tag: LSA1792
LSA1792 -183 4.2 ATGTAAACGTTTGATA
-79 4.3 ATGTAAACGGTTGTAT
-54 4.5 TGAAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0401 -219 4.7 ATGTAAGCGTTATCTT
-30 4.9 ATAAAAGCGTTTACAT
Lactobacillus fermentum IFO 3956 LAF_1578 -126 4.4 TTGGCAGCGATTTCAA
-57 4.5 AGAAAAGCGCTTACAA
Lactobacillus johnsonii NCC 533 LJ0519 -214 4.6 ATGTAAACGCATTCTT
-37 4.4 TTTAAAACGCTTACAC
Lactobacillus plantarum WCFS1 lp_0185 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1792 -183 4.2 ATGTAAACGTTTGATA
-54 4.5 TGAAAAGCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0066 -52 4.2 CATTAAGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0518 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Position: -188
Score: 4.5
Sequence: TTGTAAACGCTTTTCA
Locus tag: LSA1793
LSA1793 -188 4.5 TTGTAAACGCTTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrB
Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Lactobacillus acidophilus NCFM LBA0400 -220 4.9 ATGTAAACGCTTTTAT
-188 4.5 ATGATAACGTATTCAA
-31 4.6 AAGATAACGCTTACAT
Lactobacillus johnsonii NCC 533 LJ0518 -214 4.7 GTGTAAGCGTTTTAAA
-184 4.3 ATGATAGCGTATTCTA
-37 4.6 AAGAATGCGTTTACAT
Lactobacillus plantarum WCFS1 lp_0187 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Lactobacillus sakei subsp. sakei 23K LSA1793 -188 4.5 TTGTAAACGCTTTTCA
-163 4.3 ATACAACCGTTTACAT
-59 4.1 TATCAAACGTTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0065 -121 4.1 ATTTAACCGCTTTTTT
-33 4.5 AAGAATACGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0519 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Position: -71
Score: 4.1
Sequence: TTTGTAACGCTTACAA
Locus tag: LSA1830
LSA1830 -71 4.1 TTTGTAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus acidophilus NCFM LBA1974 -110 4.4 GAAAAAGCGGTTTCAT
-78 4 AAGATAGCGTTTTGAA
Lactobacillus brevis ATCC 367 LVIS_0313 -152 4.3 TTGAAAGCGTGAACAA
Lactobacillus casei ATCC 334 LSEI_1784 -149 4 GTTTAAGCGTTTTATA
-92 4.4 ATGAAAGGGCTTGCAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_2034 -76 4 TTGATAGCACTTGCAA
Lactobacillus johnsonii NCC 533 LJ1853 -79 4.1 CAGCAACCGCTTTCAA
Lactobacillus plantarum WCFS1 lp_0849 -390 4.3 ATGTAAGCGTCATCAT
-86 4.9 ATAAAAGCGTTTACAT
Lactobacillus rhamnosus GG LGG_01836 -136 4.6 ATTAAAGCGCTTTCCT
-89 4.1 GTGAAAGGGTTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1830 -71 4.1 TTTGTAACGCTTACAA
Position: -78
Score: 4.7
Sequence: TTGAAACCGTTTTATA
Locus tag: LSA1860
LSA1860 -78 4.7 TTGAAACCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Lactobacillus brevis ATCC 367 LVIS_1743 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1555 -100 4.3 TGGTAAGCGTTTTATA
-76 4.4 GTGAAATCGCTTACAG
Lactobacillus plantarum WCFS1 lp_3557 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0467 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1860 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0853 -104 5 TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0162 -48 4.9 ATGAATACGCTTTCAA
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