Propagation of CcpA regulog to Pediococcus pentosaceus ATCC 25745
| Source regulog: | CcpA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Pediococcus pentosaceus ATCC 25745 |
| Orthologous TF(s) | PEPE_1250 |
| Regulated genes | 44 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -51
Score: 4.5 Sequence: ATGAAAAGGCTTTCTA
Locus tag: PEPE_0106
|
||||
| PEPE_0106 | -51 | 4.5 | ATGAAAAGGCTTTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bglA | ||||
| Ortholog function: 6-phospho-beta-glucosidase (EC 3.2.1.86) | ||||
| Lactobacillus acidophilus NCFM | LBA0874 | -44 | 4.9 | ATGCAAACGTTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0182 | -132 | 4.8 | ATGAAACCGTTTGCAA |
| -35 | 4.3 | TCGAAAACGCTTACTT | ||
| Lactobacillus plantarum WCFS1 | lp_2777 | -68 | 4.7 | ATGAAAGCGGTTTATT |
| Oenococcus oeni PSU-1 | OEOE_0341 | -70 | 4.8 | ATGAAAGCGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0106 | -51 | 4.5 | ATGAAAAGGCTTTCTA |
|
Position: -45
Score: 4.7 Sequence: ATGAAAGCGGTATCTT
Locus tag: PEPE_0112
|
||||
| PEPE_0112 | -45 | 4.7 | ATGAAAGCGGTATCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yghZ | ||||
| Ortholog function: Predicted oxidoreductase, aryl-alcohol dehydrogenase related | ||||
| Lactobacillus plantarum WCFS1 | lp_3489 | -49 | 4.6 | ATGAAAGCGGTAACTT |
| Lactobacillus sakei subsp. sakei 23K | LSA0260 | -45 | 4.5 | ATGTAACCGATTGCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1315 | -77 | 4.8 | AGGTAAGCGTTTACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0112 | -45 | 4.7 | ATGAAAGCGGTATCTT |
|
Position: -75
Score: 4.9 Sequence: TTGTAAGCGGTTTTAT
Locus tag: PEPE_0144
|
||||
| PEPE_0144 | -75 | 4.9 | TTGTAAGCGGTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbp | ||||
| Ortholog function: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2045 | -81 | 4.3 | CTGAAACCGTATACAA |
| -14 | 4.1 | AAGGAAGCTGTTTCAT | ||
| Lactobacillus rhamnosus GG | LGG_02032 | -82 | 4.8 | TTGAAACCGTATACAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0144 | -75 | 4.9 | TTGTAAGCGGTTTTAT |
|
Position: -48
Score: 4.9 Sequence: ATGAATACGCTTTCAA
Locus tag: PEPE_0162
|
||||
| PEPE_0162 | -48 | 4.9 | ATGAATACGCTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araE | ||||
| Ortholog function: Arabinose-proton symporter | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1743 | -79 | 4.4 | TTGAAAGGGCTTTCGA |
| Lactobacillus fermentum IFO 3956 | LAF_1555 | -100 | 4.3 | TGGTAAGCGTTTTATA |
| -76 | 4.4 | GTGAAATCGCTTACAG | ||
| Lactobacillus plantarum WCFS1 | lp_3557 | -63 | 4.6 | TTGAAAGGGCTTTCTA |
| Lactobacillus reuteri JCM 1112 | LAR_0467 | -63 | 4.7 | ATGAAAGCGCGTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1860 | -78 | 4.7 | TTGAAACCGTTTTATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0853 | -104 | 5 | TTGTAAGCGTTTCCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0162 | -48 | 4.9 | ATGAATACGCTTTCAA |
|
Position: -75
Score: 4.8 Sequence: TTGCAAACGCTTTCTT
Locus tag: PEPE_0182
|
||||
| PEPE_0182 | -75 | 4.8 | TTGCAAACGCTTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhX | ||||
| Ortholog function: Zn conatining alcohol dehydrogenase | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0797 | -31 | 4.6 | ATGTAAGCGCTACCAA |
| Lactobacillus plantarum WCFS1 | lp_3054 | -85 | 4.6 | TTGTAAGCGCTTGAAT |
| -41 | 4.5 | TTGTAAGCGGTTTACA | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0542 | -66 | 4.3 | TTGTAAACGATTCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1748 | -31 | 4.4 | TTGTAAACGATGTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0182 | -75 | 4.8 | TTGCAAACGCTTTCTT |
|
Position: -107
Score: 4.7 Sequence: TTGAAAACGCTTTACA
Locus tag: PEPE_0185
|
||||
| PEPE_0185 | -107 | 4.7 | TTGAAAACGCTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xynT | ||||
| Ortholog function: Na+/xyloside symporter | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0463 | -202 | 4.7 | ATGTCAACGCTTTCAT |
| -115 | 4.2 | GTGTAAGCGGTTGCAG | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1245 | -52 | 5.1 | TAGTAAGCGCTTACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0185 | -150 | 4.2 | TTGTAAGCGAATACAC |
| -129 | 4.4 | ATGTCAACGCTTTTAT | ||
| -107 | 4.7 | TTGAAAACGCTTTACA | ||
|
Position: -83
Score: 4.5 Sequence: TTGGAAACGCTTTATT
Locus tag: PEPE_0189
|
||||
| PEPE_0189 | -83 | 4.5 | TTGGAAACGCTTTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptcA | ||||
| Ortholog function: Putrescine carbamoyltransferase (EC 2.1.3.6) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_2210 | -96 | 4.3 | TTGGAAACGCTTCCCA |
| Lactobacillus sakei subsp. sakei 23K | LSA0067 | -42 | 4.3 | TTGTAAGCGTAGTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0189 | -83 | 4.5 | TTGGAAACGCTTTATT |
|
Position: -41
Score: 4.8 Sequence: TTGTAAGCGTTTTATA
Locus tag: PEPE_0205
|
||||
| PEPE_0205 | -41 | 4.8 | TTGTAAGCGTTTTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacL | ||||
| Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23) | ||||
| Lactobacillus acidophilus NCFM | LBA1467 | -47 | 5 | ATAAAAGCGTTTTCAA |
| Lactobacillus brevis ATCC 367 | LVIS_2259 | -32 | 4.5 | GTGTAAGCGTTTTATA |
| Lactobacillus fermentum IFO 3956 | LAF_0247 | -48 | 5 | TTGAAACCGTTATCAT |
| Lactobacillus helveticus DPC 4571 | lhv_1549 | -46 | 4.4 | ATAAAAGCTCTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0855 | -45 | 4.4 | ATAAAAGCGTCTTCAA |
| Lactobacillus plantarum WCFS1 | lp_3483 | -43 | 5 | TTGTAAGCGTTTTTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0276 | -53 | 4.4 | ATGAAAGCGCTATACT |
| Lactobacillus sakei subsp. sakei 23K | LSA1711 | -37 | 4.9 | ATGAAACCGTTTTAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0376 | -32 | 4.5 | ATGTAAGCATTTTCTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0205 | -41 | 4.8 | TTGTAAGCGTTTTATA |
|
Position: -255
Score: 4.6 Sequence: TATAAAACGCTTACAA
Locus tag: PEPE_0206
|
||||
| PEPE_0206 | -255 | 4.6 | TATAAAACGCTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galK | ||||
| Ortholog function: Galactokinase (EC 2.7.1.6) | ||||
| Lactobacillus acidophilus NCFM | LBA1459 | -36 | 4.3 | CTGAAAACGATTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1904 | -98 | 4.7 | ATGAAAACGTTTTATA |
| Lactobacillus fermentum IFO 3956 | LAF_1792 | -99 | 4.1 | ATGTAAGCGCTCTATT |
| Lactobacillus helveticus DPC 4571 | lhv_1501 | -37 | 4.8 | TTGAAAACGATTACAG |
| Lactobacillus johnsonii NCC 533 | LJ0859 | -36 | 5.1 | ATGAAAACGATTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_1662 | -125 | 4.5 | GTGTAATCGTTTTCTT |
| -93 | 4.4 | TTGTAAGCGCTTATTG | ||
|
Position: -71
Score: 4.7 Sequence: TTGTAAACGGATACAT
Locus tag: PEPE_0276
|
||||
| PEPE_0276 | -71 | 4.7 | TTGTAAACGGATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dhaT | ||||
| Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_2191 | -191 | 4.6 | TTGAAAGCGGTAAAAA |
| Lactobacillus fermentum IFO 3956 | LAF_0741 | -39 | 4.7 | ATGGAAGCGTATTCAA |
| Lactobacillus plantarum WCFS1 | lp_3051 | -36 | 4.7 | ATGATAGCGATTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0029 | -39 | 4.4 | ATGGAATCGTATTCAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0122 | -147 | 4.2 | TTTGTAACGCTTTCAT |
| -55 | 4.1 | CGGTAAGCGTTATCAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0276 | -104 | 4.1 | ATAAAAACGTTTAACT |
| -71 | 4.7 | TTGTAAACGGATACAT | ||
| -15 | 4 | AAGAAGGCGTTTAAAA | ||
|
Position: -58
Score: 4.5 Sequence: TCGTAAGCGGTTTCAT
Locus tag: PEPE_0281
|
||||
| PEPE_0281 | -58 | 4.5 | TCGTAAGCGGTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pts20B | ||||
| Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) | ||||
| Lactobacillus plantarum WCFS1 | lp_2781 | -68 | 4.7 | ATGAAAGCGGTTTATT |
| Oenococcus oeni PSU-1 | OEOE_0338 | -70 | 4.8 | ATGAAAGCGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0281 | -58 | 4.5 | TCGTAAGCGGTTTCAT |
|
Position: -61
Score: 4.6 Sequence: TTAAAAGCGCTTTCGT
Locus tag: PEPE_0282
|
||||
| PEPE_0282 | -61 | 4.6 | TTAAAAGCGCTTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pts20A | ||||
| Ortholog function: PTS system, cellobiose-specific IIA component (EC 2.7.1.69) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2818 | -89 | 4.6 | TTGAAAACGCTTGTAA |
| -39 | 4.3 | CAGAAAACGATTACAT | ||
| Lactobacillus plantarum WCFS1 | lp_2780 | -68 | 4.7 | ATGAAAGCGGTTTATT |
| Lactobacillus rhamnosus GG | LGG_02824 | -91 | 4.2 | CTGAAAGCGCTTGTAA |
| Oenococcus oeni PSU-1 | OEOE_0339 | -70 | 4.8 | ATGAAAGCGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0282 | -58 | 4.5 | TCGTAAGCGGTTTCAT |
|
Position: -103
Score: 4.3 Sequence: TTGATAGCCTTTTCAT
Locus tag: PEPE_0412
|
||||
| PEPE_0412 | -103 | 4.3 | TTGATAGCCTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: guaA | ||||
| Ortholog function: GMP synthase (EC 6.3.5.2) | ||||
| Lactobacillus johnsonii NCC 533 | LJ0229 | -120 | 4 | ATTAAAGCGCTATTTT |
| Lactobacillus plantarum WCFS1 | lp_0914 | -61 | 4.2 | TTGATAAGGGTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0139 | -44 | 3.8 | ATGTAACCGTTTAGCA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1537 | -75 | 4.2 | TTGAAAGCGTAATATT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0412 | -103 | 4.3 | TTGATAGCCTTTTCAT |
|
Position: -77
Score: 4.1 Sequence: AAAAAAACGCTTTCTG
Locus tag: PEPE_0446
|
||||
| PEPE_0446 | -77 | 4.1 | AAAAAAACGCTTTCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgm | ||||
| Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0949 | -102 | 3.9 | TTGAGCGCGTTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0862 | -121 | 4.3 | ATAAAAGCGTTTAATA |
| Lactobacillus plantarum WCFS1 | lp_0764 | -40 | 4.4 | TTGTAAGCACTAACAA |
| Lactobacillus rhamnosus GG | LGG_00921 | -100 | 3.9 | TTGAGCGCGTTTTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0446 | -77 | 4.1 | AAAAAAACGCTTTCTG |
|
Position: -181
Score: 5.1 Sequence: TTGTAAGCGTTATCAT
Locus tag: PEPE_0479
|
||||
| PEPE_0479 | -181 | 5.1 | TTGTAAGCGTTATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lp_0827 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0695 | -166 | 4.9 | TTGACAGCGCTTACAA |
| Lactobacillus fermentum IFO 3956 | LAF_0383 | -179 | 4.9 | TTGACAGCGCTTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0406 | -149 | 4.8 | ATGGAAACGCTATCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0428 | -174 | 4.8 | TTGACAACGCTTACAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1300 | -200 | 4.3 | TTGACACCGCTTACAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0479 | -181 | 5.1 | TTGTAAGCGTTATCAT |
|
Position: -204
Score: 4.7 Sequence: TTGTATCCGTTTTCAT
Locus tag: PEPE_0511
|
||||
| PEPE_0511 | -204 | 4.7 | TTGTATCCGTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rafR | ||||
| Ortholog function: Raffinose utilization transcriptional regulator RafR, AraC family | ||||
| Lactobacillus acidophilus NCFM | LBA1443 | -206 | 5 | TTTTAAGCGCTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0511 | -204 | 4.7 | TTGTATCCGTTTTCAT |
|
Position: -46
Score: 4.7 Sequence: ATGAAAACGGATACAA
Locus tag: PEPE_0512
|
||||
| PEPE_0512 | -46 | 4.7 | ATGAAAACGGATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacS | ||||
| Ortholog function: Lactose and galactose permease | ||||
| Lactobacillus johnsonii NCC 533 | LJ0260 | -70 | 4.2 | TATAAAGCGTATACAT |
| -36 | 4.8 | TTGAAAGCGAATACAA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0880 | -53 | 5.1 | ATGAAAGCGCTTACTA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0512 | -46 | 4.7 | ATGAAAACGGATACAA |
|
Position: -212
Score: 4.3 Sequence: ATAAAACCGCTTACAC
Position: -58
Score: 4.1 Sequence: TGTAAAGCGCTTGCAT
Locus tag: PEPE_0518
|
||||
| PEPE_0518 | -212 | 4.3 | ATAAAACCGCTTACAC | |
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrA | ||||
| Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA0401 | -219 | 4.7 | ATGTAAGCGTTATCTT |
| -30 | 4.9 | ATAAAAGCGTTTACAT | ||
| Lactobacillus fermentum IFO 3956 | LAF_1578 | -126 | 4.4 | TTGGCAGCGATTTCAA |
| -57 | 4.5 | AGAAAAGCGCTTACAA | ||
| Lactobacillus johnsonii NCC 533 | LJ0519 | -214 | 4.6 | ATGTAAACGCATTCTT |
| -37 | 4.4 | TTTAAAACGCTTACAC | ||
| Lactobacillus plantarum WCFS1 | lp_0185 | -212 | 4.3 | ATAAAACCGCTTACAC |
| -157 | 4 | ATGTCAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1792 | -183 | 4.2 | ATGTAAACGTTTGATA |
| -54 | 4.5 | TGAAAAGCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0066 | -52 | 4.2 | CATTAAGCGTTTTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0518 | -212 | 4.3 | ATAAAACCGCTTACAC |
| -157 | 4 | ATGTCAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
|
Position: -59
Score: 4.6 Sequence: GTGTAAGCGGTTTTAT
Locus tag: PEPE_0519
|
||||
| PEPE_0519 | -59 | 4.6 | GTGTAAGCGGTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrB | ||||
| Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26) | ||||
| Lactobacillus acidophilus NCFM | LBA0400 | -220 | 4.9 | ATGTAAACGCTTTTAT |
| -188 | 4.5 | ATGATAACGTATTCAA | ||
| -31 | 4.6 | AAGATAACGCTTACAT | ||
| Lactobacillus johnsonii NCC 533 | LJ0518 | -214 | 4.7 | GTGTAAGCGTTTTAAA |
| -184 | 4.3 | ATGATAGCGTATTCTA | ||
| -37 | 4.6 | AAGAATGCGTTTACAT | ||
| Lactobacillus plantarum WCFS1 | lp_0187 | -213 | 4.3 | ATGCAAGCGCTTTACA |
| -59 | 4.6 | GTGTAAGCGGTTTTAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1793 | -188 | 4.5 | TTGTAAACGCTTTTCA |
| -163 | 4.3 | ATACAACCGTTTACAT | ||
| -59 | 4.1 | TATCAAACGTTTACAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0065 | -121 | 4.1 | ATTTAACCGCTTTTTT |
| -33 | 4.5 | AAGAATACGTTTACAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0519 | -213 | 4.3 | ATGCAAGCGCTTTACA |
| -59 | 4.6 | GTGTAAGCGGTTTTAT | ||
|
Position: -127
Score: 4 Sequence: ATGTAAGGGCTTGCTT
Locus tag: PEPE_0609
|
||||
| PEPE_0609 | -127 | 4 | ATGTAAGGGCTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: Phosphotransferase system, HPr-related protein | ||||
| Lactobacillus acidophilus NCFM | LBA0639 | -111 | 4.4 | ATGTAAACTGTTACAT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0512 | -108 | 4.7 | ATGAAAACATTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_0686 | -109 | 4.4 | ATGTAAGCTATTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0816 | -109 | 4.6 | ATGTAAACATTTACAT |
| Lactobacillus plantarum WCFS1 | lp_1273 | -135 | 4 | ATGAAAGGGCTTGTAT |
| Lactobacillus reuteri JCM 1112 | LAR_1256 | -102 | 4 | TATTTAACGCTTACAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0388 | -91 | 4.1 | TTGTTATCGTTTGCAT |
| -68 | 4.2 | ATGTAAACGTGTTCTT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1780 | -157 | 5.3 | ATGTAAACGTTTTCAT |
| -63 | 4.7 | TTGTAAGCGCTTTGAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0609 | -127 | 4 | ATGTAAGGGCTTGCTT |
|
Position: -88
Score: 4.8 Sequence: GTGAAAGCGCTAACAT
Locus tag: PEPE_0697
|
||||
| PEPE_0697 | -88 | 4.8 | GTGAAAGCGCTAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lrgA | ||||
| Ortholog function: Antiholin-like protein LrgA | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0621 | -235 | 4.4 | GTGTAAGCGTTTCCTT |
| Lactobacillus reuteri JCM 1112 | LAR_0851 | -101 | 4.4 | GTGAAAACGAATACAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0697 | -88 | 4.8 | GTGAAAGCGCTAACAT |
|
Position: -39
Score: 4.4 Sequence: ATGAAAGCGCTTCATA
Locus tag: PEPE_0968
|
||||
| PEPE_0968 | -39 | 4.4 | ATGAAAGCGCTTCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: Predicted maltose/maltodextrin permease | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0357 | -71 | 4.2 | ATGAAAGCGGTGCCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1282 | -59 | 4.5 | AAGAATGCGATTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0968 | -39 | 4.4 | ATGAAAGCGCTTCATA |
|
Position: -116
Score: 4 Sequence: AATAAAGCACTTACAT
Locus tag: PEPE_1093
|
||||
| PEPE_1093 | -116 | 4 | AATAAAGCACTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfk | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Lactobacillus acidophilus NCFM | LBA0956 | -134 | 4.2 | ATGTAAGTGCTAACAT |
| Lactobacillus helveticus DPC 4571 | lhv_1049 | -136 | 4.2 | ATGTAAGTGCTAACAT |
| Lactobacillus johnsonii NCC 533 | LJ1079 | -132 | 4.5 | TTGAAAGCGAAAACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1093 | -116 | 4 | AATAAAGCACTTACAT |
|
Position: -6
Score: 4.3 Sequence: ATGAAAGTGCTTACAG
Locus tag: PEPE_1166
|
||||
| PEPE_1166 | -6 | 4.3 | ATGAAAGTGCTTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruR | ||||
| Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family | ||||
| Lactobacillus acidophilus NCFM | LBA1779 | -37 | 4.2 | GAGAAAGCGAATACAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1889 | -164 | 4 | GAGAAAGCCTTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_1846 | 12 | 4.3 | GAGAAAGCGGATACAA |
| Lactobacillus johnsonii NCC 533 | LJ0570 | -40 | 4.1 | CTGAAAGCGTTTATCA |
| Lactobacillus plantarum WCFS1 | lp_2095 | -6 | 4.3 | TTGAAAGTGCTTACAG |
| Lactobacillus sakei subsp. sakei 23K | LSA1048 | -130 | 4 | ATGAAAACCTTTACAC |
| -40 | 4.3 | TTGTAAACGATGACAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1166 | -6 | 4.3 | ATGAAAGTGCTTACAG |
|
Position: -69
Score: 4.6 Sequence: TTGATAACGTATTCAT
Locus tag: PEPE_1250
|
||||
| PEPE_1250 | -69 | 4.6 | TTGATAACGTATTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccpA | ||||
| Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family | ||||
| Lactobacillus acidophilus NCFM | LBA0431 | -75 | 4.4 | CTGTAAACGTTTGCAA |
| Lactobacillus brevis ATCC 367 | LVIS_1203 | -107 | 4.7 | TCGAAAACGTTTTCAA |
| -49 | 4.1 | TTGAAAACGGATGAAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0809 | -94 | 4 | AGTAAAACGCTTGCAT |
| Lactobacillus helveticus DPC 4571 | lhv_0457 | -76 | 4.3 | ATGTAAACGTTTGCAC |
| Lactobacillus johnsonii NCC 533 | LJ0491 | -74 | 4 | TCGTAAACGGTTGCAA |
| Lactobacillus plantarum WCFS1 | lp_2256 | -121 | 5.2 | ATGAAAGCGATTTCAA |
| -51 | 4 | ATGAAAACGGATGAAA | ||
| Lactobacillus rhamnosus GG | LGG_00793 | -95 | 4 | AGTAAAACGCTTGCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0544 | -114 | 4.4 | ATGAAAACACTTATAA |
| -92 | 4.9 | TTGTAAGCGTTTGCAA | ||
| Oenococcus oeni PSU-1 | OEOE_0684 | -59 | 4.6 | ATGTAATCGCTTGCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1250 | -69 | 4.6 | TTGATAACGTATTCAT |
|
Position: -109
Score: 4.6 Sequence: ATGAATACGTTATCAA
Locus tag: PEPE_1251
|
||||
| PEPE_1251 | -109 | 4.6 | ATGAATACGTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepQ | ||||
| Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9) | ||||
| Lactobacillus acidophilus NCFM | LBA0430 | -85 | 4.6 | TTGCAAACGTTTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1204 | -103 | 4.9 | TTGAAAACGTTTTCGA |
| Lactobacillus casei ATCC 334 | LSEI_0808 | -229 | 4.2 | ATGCAAGCGTTTTACT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1474 | -89 | 4 | GTGCAATCGCTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0456 | -86 | 4.6 | GTGCAAACGTTTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0490 | -85 | 4.2 | TTGCAACCGTTTACGA |
| Lactobacillus plantarum WCFS1 | lp_2258 | -158 | 5.2 | TTGAAATCGCTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0414 | -120 | 4.1 | ATGCAAGCGGTTTACA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0419 | -125 | 4 | TTGCAAGCGTTTCATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0543 | -124 | 4.9 | TTGCAAACGCTTACAA |
| -102 | 4.2 | TTATAAGTGTTTTCAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1251 | -109 | 4.6 | ATGAATACGTTATCAA |
|
Position: -38
Score: 4.6 Sequence: ACGAAAACGTTTTCAA
Locus tag: PEPE_1252
|
||||
| PEPE_1252 | -38 | 4.6 | ACGAAAACGTTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxB | ||||
| Ortholog function: Pyruvate oxidase (EC 1.2.3.3) | ||||
| Lactobacillus plantarum WCFS1 | lp_2629 | -41 | 4.1 | ACGAAAACGTATACAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1188 | -89 | 4.8 | TTGTAATCGATTTCAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1372 | -53 | 4.6 | AAGAAAACGTTTGCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1252 | -38 | 4.6 | ACGAAAACGTTTTCAA |
|
Position: -21
Score: 4.3 Sequence: ATGAAAGGGGTTTTAT
Locus tag: PEPE_1334
|
||||
| PEPE_1334 | -21 | 4.3 | ATGAAAGGGGTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pmi | ||||
| Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8) | ||||
| Lactobacillus acidophilus NCFM | LBA0745 | -58 | 4.3 | AAGAAAAGGGTTTCAT |
| Lactobacillus brevis ATCC 367 | LVIS_1656 | -86 | 4.8 | TAGAAAGCGCTTGCAA |
| Lactobacillus helveticus DPC 4571 | lhv_0789 | -58 | 4.3 | AAGAAAAGGGTTTCAT |
| Lactobacillus johnsonii NCC 533 | LJ0916 | -60 | 4.6 | TTGAAAGTGGTTTCAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1146 | -99 | 4.1 | ACGAAATCGCTTTAAA |
| Oenococcus oeni PSU-1 | OEOE_0249 | -30 | 4.9 | ATGATAACGCTTACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1334 | -21 | 4.3 | ATGAAAGGGGTTTTAT |
|
Position: -35
Score: 4.7 Sequence: AAGAAAGCGGTTACTT
Locus tag: PEPE_1360
|
||||
| PEPE_1360 | -35 | 4.7 | AAGAAAGCGGTTACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntP | ||||
| Ortholog function: H+/gluconate symporter related permease | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1586 | -19 | 4.5 | ATGAAAGGGCTTACTT |
| Lactobacillus casei ATCC 334 | LSEI_0229 | -43 | 4.9 | TTGTAAGCGATTTCTT |
| Lactobacillus rhamnosus GG | LGG_00277 | -194 | 4.7 | TTGTAAGCGGTTTCTG |
| Lactobacillus sakei subsp. sakei 23K | LSA0299 | -36 | 4.5 | ATGTAAACGCAAACAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1360 | -35 | 4.7 | AAGAAAGCGGTTACTT |
|
Position: -146
Score: 4.5 Sequence: TTGAAAGCGTTTTTTG
Locus tag: PEPE_1518
|
||||
| PEPE_1518 | -146 | 4.5 | TTGAAAGCGTTTTTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manL | ||||
| Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA0452 | -42 | 4.5 | ATAAAAGCGGATTCAT |
| Lactobacillus fermentum IFO 3956 | LAF_0391 | -140 | 4.7 | TAGTAAGCGTTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0480 | -42 | 4.5 | ATAAAAGCGGATTCAT |
| Lactobacillus johnsonii NCC 533 | LJ0503 | -106 | 4.4 | ATGCAAGCATTTTCAA |
| -68 | 4.1 | AAGCAAACGTATACAT | ||
| Lactobacillus plantarum WCFS1 | lp_0575 | 1 | 4 | TGGTAAGCATTATCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0449 | -136 | 4.2 | AGTAAAGCGTTTTAAA |
| -57 | 4.6 | TTGTTAGCGTTTTTAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0086 | -109 | 4.3 | TAGAAATCGTTTACAC |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0654 | -131 | 4.3 | TAGTAAGTGTTTTCAA |
| -61 | 4.1 | ATGAAAAGGCTTTATT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1768 | -100 | 4.7 | ATGTAAACGGTAACAA |
| -75 | 5.4 | TTGAAAGCGTTTACAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1518 | -146 | 4.5 | TTGAAAGCGTTTTTTG |
|
Position: -81
Score: 4.7 Sequence: TTATAAGCGTTTTAAT
Position: -66
Score: 4.1 Sequence: TTGTAAGCGGTTCACA
Position: 7
Score: 3.8 Sequence: AAGTAAAAGTTATCAT
Locus tag: PEPE_1619
|
||||
| PEPE_1619 | -81 | 4.7 | TTATAAGCGTTTTAAT | |
| -66 | 4.1 | TTGTAAGCGGTTCACA | ||
| 7 | 3.8 | AAGTAAAAGTTATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcaD | ||||
| Ortholog function: NADH peroxidase (EC 1.11.1.1) | ||||
| Lactobacillus acidophilus NCFM | LBA1401 | -52 | 4.4 | ATGAAAGAGGTTACAA |
| Lactobacillus plantarum WCFS1 | lp_2544 | -200 | 4.3 | TTGTAACCGTTTTAGT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0137 | -56 | 3.8 | GTGAAAACGTTCTATA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1619 | -81 | 4.7 | TTATAAGCGTTTTAAT |
| -66 | 4.1 | TTGTAAGCGGTTCACA | ||
|
Position: -51
Score: 5 Sequence: TAGAAAGCGCTTTCTT
Locus tag: PEPE_1623
|
||||
| PEPE_1623 | -51 | 5 | TAGAAAGCGCTTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpK | ||||
| Ortholog function: Glycerol kinase (EC 2.7.1.30) | ||||
| Lactobacillus plantarum WCFS1 | lp_0370 | -46 | 5 | ATGATAGCGTTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1623 | -84 | 4.2 | TTAAAAACGATTTATA |
| -51 | 5 | TAGAAAGCGCTTTCTT | ||
|
Position: -119
Score: 5 Sequence: ATGAAAACGTTTTAAA
Position: -55
Score: 4.5 Sequence: GTGAAAGCGCTTGCTA
Locus tag: PEPE_1631
|
||||
| PEPE_1631 | -119 | 5 | ATGAAAACGTTTTAAA | |
| -55 | 4.5 | GTGAAAGCGCTTGCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcB | ||||
| Ortholog function: Ornithine carbamoyltransferase (EC 2.1.3.3) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0298 | -65 | 4.7 | TTGAAAACGCTTGCTA |
| Lactobacillus reuteri JCM 1112 | LAR_0419 | -144 | 4.2 | TTGTTTCCGCTTACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1631 | -119 | 5 | ATGAAAACGTTTTAAA |
| -55 | 4.5 | GTGAAAGCGCTTGCTA | ||
|
Position: -167
Score: 4.9 Sequence: TTTAAAACGTTTTCAT
Locus tag: PEPE_1632
|
||||
| PEPE_1632 | -167 | 4.9 | TTTAAAACGTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycbB | ||||
| Ortholog function: Signal transduction response regulator | ||||
| Lactobacillus brevis ATCC 367 | LVIS_2030 | -65 | 4.7 | TAGAAAGCGTTTTCGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1632 | -231 | 4.3 | TAGCAAGCGCTTTCAC |
| -167 | 4.9 | TTTAAAACGTTTTCAT | ||
|
Position: -63
Score: 4.8 Sequence: TTGTAATCGCTTTCTA
Locus tag: PEPE_1662
|
||||
| PEPE_1662 | -63 | 4.8 | TTGTAATCGCTTTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dhaK | ||||
| Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK | ||||
| Lactobacillus acidophilus NCFM | LBA1433 | -35 | 4.7 | TTGTAAGCGATTGCAT |
| Lactobacillus plantarum WCFS1 | lp_0168 | -58 | 4.6 | TTGAAATCGGATTCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1633 | -64 | 5 | TTGAAAGCGTTTATAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1662 | -63 | 4.8 | TTGTAATCGCTTTCTA |
|
Position: -65
Score: 4.9 Sequence: ATTAAAACGTTTTCAT
Locus tag: PEPE_1699
|
||||
| PEPE_1699 | -65 | 4.9 | ATTAAAACGTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsK | ||||
| Ortholog function: Ribokinase (EC 2.7.1.15) | ||||
| Lactobacillus acidophilus NCFM | LBA0587 | -61 | 4.1 | TTGGATGCGTTTTTTT |
| Lactobacillus plantarum WCFS1 | lp_3660 | -72 | 4.9 | ATTAAAACGTTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1699 | -65 | 4.9 | ATTAAAACGTTTTCAT |
|
Position: -140
Score: 4.2 Sequence: ATATAAGCGTTTAATT
Locus tag: PEPE_1700
|
||||
| PEPE_1700 | -140 | 4.2 | ATATAAGCGTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsR | ||||
| Ortholog function: Ribose operon transcriptional regulator, LacI family | ||||
| Lactobacillus casei ATCC 334 | LSEI_0306 | -88 | 4.5 | TTGACAGCGCTTCCAA |
| Lactobacillus rhamnosus GG | LGG_00372 | -89 | 4.5 | TTGACAGCGCTTCCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0203 | -114 | 4.3 | TGTAAACCGTTTTCAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0795 | -76 | 5.1 | ATGGAAGCGTTTTCAA |
| Oenococcus oeni PSU-1 | OEOE_0146 | -45 | 4.6 | TTGTAAACGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1700 | -140 | 4.2 | ATATAAGCGTTTAATT |
|
Position: -76
Score: 4.3 Sequence: AAGAAAGCCTTTACAT
Locus tag: PEPE_1763
|
||||
| PEPE_1763 | -76 | 4.3 | AAGAAAGCCTTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacX | ||||
| Ortholog function: Aldose 1-epimerase | ||||
| Lactobacillus casei ATCC 334 | LSEI_2598 | -36 | 4.5 | TTGAATGCGTTTTCGT |
| Lactobacillus johnsonii NCC 533 | LJ0171 | -84 | 4.2 | ATGTTATCGCTTACAG |
| Lactobacillus rhamnosus GG | LGG_02577 | -36 | 4.7 | ATGAATGCGTTTTCTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1763 | -76 | 4.3 | AAGAAAGCCTTTACAT |
|
Position: -40
Score: 4.8 Sequence: TAGAAAGCGCTTCCAT
Locus tag: PEPE_1774
|
||||
| PEPE_1774 | -40 | 4.8 | TAGAAAGCGCTTCCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lplA1 | ||||
| Ortholog function: Lipoate-protein ligase A | ||||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0736 | -31 | 4.9 | GTGTAAGCGGTTACAA |
| Oenococcus oeni PSU-1 | OEOE_0327 | -53 | 5.1 | TTGAAAGCGCTTACAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1774 | -107 | 4 | TTTAAAACATTTTAAA |
| -40 | 4.8 | TAGAAAGCGCTTCCAT | ||
|
Position: -34
Score: 4.8 Sequence: ATGAAAGCGAATTCAA
Locus tag: PEPE_1776
|
||||
| PEPE_1776 | -34 | 4.8 | ATGAAAGCGAATTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bglB | ||||
| Ortholog function: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86) | ||||
| Lactobacillus acidophilus NCFM | LBA0885 | -35 | 4.8 | ATGAAAGCGATTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0941 | -34 | 4 | CTGAAAGCACTTACAG |
| Lactobacillus johnsonii NCC 533 | LJ0194 | -28 | 4.7 | ATGTAAGCGATTGCAA |
| Lactobacillus plantarum WCFS1 | lp_3011 | -43 | 4.5 | AGGAAAGCGTTTTCCA |
| Oenococcus oeni PSU-1 | OEOE_1210 | -93 | 4.5 | ATGGTAGCGATTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1776 | -34 | 4.8 | ATGAAAGCGAATTCAA |
|
Position: -141
Score: 4.7 Sequence: TTGAATTCGCTTTCAT
Locus tag: PEPE_1777
|
||||
| PEPE_1777 | -141 | 4.7 | TTGAATTCGCTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lhv_0924 | ||||
| Ortholog function: Predicted transcriptional regulator, GntR family | ||||
| Lactobacillus helveticus DPC 4571 | lhv_0924 | -236 | 5.2 | TTGTAAGCGATTTCAA |
| -149 | 4.7 | TAGGAACCGCTTTCAT | ||
| Lactobacillus plantarum WCFS1 | lp_0152 | -193 | 4.2 | ATGTAGCCGGTTACAT |
| Lactobacillus rhamnosus GG | LGG_02679 | -170 | 4.7 | TTAAATGCGCTTTCAT |
| Oenococcus oeni PSU-1 | OEOE_1211 | -167 | 4.4 | ATGAAATCGCTACCAT |
| -115 | 4 | ATGTAAACTCTTTTTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1777 | -141 | 4.7 | TTGAATTCGCTTTCAT |
|
Position: -199
Score: 4.6 Sequence: TTAGAAACGCTTACAT
Position: -56
Score: 4.7 Sequence: TAGCAAGCGCTTACAA
Locus tag: PEPE_1804
|
||||
| PEPE_1804 | -199 | 4.6 | TTAGAAACGCTTACAT | |
| -56 | 4.7 | TAGCAAGCGCTTACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treP | ||||
| Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA1012 | -96 | 4.3 | TTGTGATCGCTTTCAA |
| -29 | 4.8 | ATGAAAACGCTTTATA | ||
| Lactobacillus casei ATCC 334 | LSEI_0631 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0760 | -104 | 4.4 | AAGTAAGCTTTTTCAT |
| -36 | 4.5 | ATGAAAGCGGATACTT | ||
| Lactobacillus plantarum WCFS1 | lp_3240 | -118 | 4.8 | AAGAAAGCGCTTTTAT |
| Lactobacillus plantarum WCFS1 | lp_0264 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00603 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1200 | -105 | 4.4 | TTGTAAACGGTTCAAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1512 | -96 | 4.5 | TTGTAAACAATTTCAT |
| -27 | 4.1 | AAGAAAAGGTTTTCAG | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0507 | -86 | 5.1 | TTGTAACCGTTTACAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0508 | -86 | 5.1 | TTGTAACCGTTTACAT |
| Oenococcus oeni PSU-1 | OEOE_1342 | -96 | 4.5 | TTGAAAACGCTTTATG |
| Oenococcus oeni PSU-1 | OEOE_1341 | -96 | 4.5 | TTGAAAACGCTTTATG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1804 | -199 | 4.6 | TTAGAAACGCTTACAT |
| -56 | 4.7 | TAGCAAGCGCTTACAA | ||
|
Position: -177
Score: 4.7 Sequence: TTGTAAGCGCTTGCTA
Position: -34
Score: 4.6 Sequence: ATGTAAGCGTTTCTAA
Locus tag: PEPE_1805
|
||||
| PEPE_1805 | -177 | 4.7 | TTGTAAGCGCTTGCTA | |
| -34 | 4.6 | ATGTAAGCGTTTCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family | ||||
| Lactobacillus acidophilus NCFM | LBA1013 | -169 | 4.7 | TATAAAGCGTTTTCAT |
| -102 | 4.5 | TTGAAAGCGATCACAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0629 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0759 | 4 | 4.4 | AAGTATCCGCTTTCAT |
| Lactobacillus plantarum WCFS1 | lp_0262 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00601 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1201 | -145 | 4.2 | GTAAAAGCGCTTTCTG |
| -82 | 4.4 | TTTGAACCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1513 | -130 | 4.2 | ATGAAATTGTTTACAA |
| Oenococcus oeni PSU-1 | OEOE_1339 | -122 | 4.1 | TTGAAAACGAAAACTT |
| -66 | 4.5 | TGAAAAACGTTTTCAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1805 | -177 | 4.7 | TTGTAAGCGCTTGCTA |
| -34 | 4.6 | ATGTAAGCGTTTCTAA | ||
|
Position: -55
Score: 4.8 Sequence: ATGAAAGCGTATTCTT
Locus tag: PEPE_1821
|
||||
| PEPE_1821 | -55 | 4.8 | ATGAAAGCGTATTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gabD | ||||
| Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) | ||||
| Lactobacillus acidophilus NCFM | LBA1632 | -66 | 4.7 | TTGTAAACGCTTTATA |
| Lactobacillus brevis ATCC 367 | LVIS_0323 | -150 | 4.9 | TTGAAAACGGTTAAAT |
| Lactobacillus casei ATCC 334 | LSEI_2278 | -18 | 4.1 | AAGGGAGCGTTTTCAA |
| Lactobacillus fermentum IFO 3956 | LAF_0045 | -62 | 4.3 | GAAAAAGCGGTTACAA |
| Lactobacillus johnsonii NCC 533 | LJ0671 | -44 | 4.6 | AAGAAAGCGCTTTATA |
| Lactobacillus plantarum WCFS1 | lp_3092 | -45 | 4 | GATTAACCGTTTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0033 | -132 | 4.1 | ATAAAAGGGCTTTTAT |
| -30 | 4.6 | ATGTAAGCGTTTATTT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1298 | -37 | 4.3 | ATGTAAGCGTACTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1821 | -55 | 4.8 | ATGAAAGCGTATTCTT |