Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Pediococcus pentosaceus ATCC 25745

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Pediococcus pentosaceus ATCC 25745
Orthologous TF(s) PEPE_1250
Regulated genes 44
Built upon 561 sites [see more]
Predicted regulatory interactions in Pediococcus pentosaceus ATCC 25745
Locus tag Position Score Sequence
Position: -51
Score: 4.5
Sequence: ATGAAAAGGCTTTCTA
Locus tag: PEPE_0106
PEPE_0106 -51 4.5 ATGAAAAGGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglA
Ortholog function: 6-phospho-beta-glucosidase (EC 3.2.1.86)
Lactobacillus acidophilus NCFM LBA0874 -44 4.9 ATGCAAACGTTTTCAA
Lactobacillus johnsonii NCC 533 LJ0182 -132 4.8 ATGAAACCGTTTGCAA
-35 4.3 TCGAAAACGCTTACTT
Lactobacillus plantarum WCFS1 lp_2777 -68 4.7 ATGAAAGCGGTTTATT
Oenococcus oeni PSU-1 OEOE_0341 -70 4.8 ATGAAAGCGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0106 -51 4.5 ATGAAAAGGCTTTCTA
Position: -45
Score: 4.7
Sequence: ATGAAAGCGGTATCTT
Locus tag: PEPE_0112
PEPE_0112 -45 4.7 ATGAAAGCGGTATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yghZ
Ortholog function: Predicted oxidoreductase, aryl-alcohol dehydrogenase related
Lactobacillus plantarum WCFS1 lp_3489 -49 4.6 ATGAAAGCGGTAACTT
Lactobacillus sakei subsp. sakei 23K LSA0260 -45 4.5 ATGTAACCGATTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1315 -77 4.8 AGGTAAGCGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0112 -45 4.7 ATGAAAGCGGTATCTT
Position: -75
Score: 4.9
Sequence: TTGTAAGCGGTTTTAT
Locus tag: PEPE_0144
PEPE_0144 -75 4.9 TTGTAAGCGGTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
Lactobacillus casei ATCC 334 LSEI_2045 -81 4.3 CTGAAACCGTATACAA
-14 4.1 AAGGAAGCTGTTTCAT
Lactobacillus rhamnosus GG LGG_02032 -82 4.8 TTGAAACCGTATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0144 -75 4.9 TTGTAAGCGGTTTTAT
Position: -48
Score: 4.9
Sequence: ATGAATACGCTTTCAA
Locus tag: PEPE_0162
PEPE_0162 -48 4.9 ATGAATACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Lactobacillus brevis ATCC 367 LVIS_1743 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1555 -100 4.3 TGGTAAGCGTTTTATA
-76 4.4 GTGAAATCGCTTACAG
Lactobacillus plantarum WCFS1 lp_3557 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0467 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1860 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0853 -104 5 TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0162 -48 4.9 ATGAATACGCTTTCAA
Position: -75
Score: 4.8
Sequence: TTGCAAACGCTTTCTT
Locus tag: PEPE_0182
PEPE_0182 -75 4.8 TTGCAAACGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhX
Ortholog function: Zn conatining alcohol dehydrogenase
Lactobacillus fermentum IFO 3956 LAF_0797 -31 4.6 ATGTAAGCGCTACCAA
Lactobacillus plantarum WCFS1 lp_3054 -85 4.6 TTGTAAGCGCTTGAAT
-41 4.5 TTGTAAGCGGTTTACA
Lactobacillus sakei subsp. sakei 23K LSA0542 -66 4.3 TTGTAAACGATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1748 -31 4.4 TTGTAAACGATGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0182 -75 4.8 TTGCAAACGCTTTCTT
Position: -107
Score: 4.7
Sequence: TTGAAAACGCTTTACA
Locus tag: PEPE_0185
PEPE_0185 -107 4.7 TTGAAAACGCTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynT
Ortholog function: Na+/xyloside symporter
Lactobacillus brevis ATCC 367 LVIS_0463 -202 4.7 ATGTCAACGCTTTCAT
-115 4.2 GTGTAAGCGGTTGCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1245 -52 5.1 TAGTAAGCGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0185 -150 4.2 TTGTAAGCGAATACAC
-129 4.4 ATGTCAACGCTTTTAT
-107 4.7 TTGAAAACGCTTTACA
Position: -83
Score: 4.5
Sequence: TTGGAAACGCTTTATT
Locus tag: PEPE_0189
PEPE_0189 -83 4.5 TTGGAAACGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptcA
Ortholog function: Putrescine carbamoyltransferase (EC 2.1.3.6)
Lactobacillus brevis ATCC 367 LVIS_2210 -96 4.3 TTGGAAACGCTTCCCA
Lactobacillus sakei subsp. sakei 23K LSA0067 -42 4.3 TTGTAAGCGTAGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0189 -83 4.5 TTGGAAACGCTTTATT
Position: -41
Score: 4.8
Sequence: TTGTAAGCGTTTTATA
Locus tag: PEPE_0205
PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Position: -255
Score: 4.6
Sequence: TATAAAACGCTTACAA
Locus tag: PEPE_0206
PEPE_0206 -255 4.6 TATAAAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus acidophilus NCFM LBA1459 -36 4.3 CTGAAAACGATTACAG
Lactobacillus brevis ATCC 367 LVIS_1904 -98 4.7 ATGAAAACGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_1792 -99 4.1 ATGTAAGCGCTCTATT
Lactobacillus helveticus DPC 4571 lhv_1501 -37 4.8 TTGAAAACGATTACAG
Lactobacillus johnsonii NCC 533 LJ0859 -36 5.1 ATGAAAACGATTACAA
Lactobacillus reuteri JCM 1112 LAR_1662 -125 4.5 GTGTAATCGTTTTCTT
-93 4.4 TTGTAAGCGCTTATTG
Position: -71
Score: 4.7
Sequence: TTGTAAACGGATACAT
Locus tag: PEPE_0276
PEPE_0276 -71 4.7 TTGTAAACGGATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus brevis ATCC 367 LVIS_2191 -191 4.6 TTGAAAGCGGTAAAAA
Lactobacillus fermentum IFO 3956 LAF_0741 -39 4.7 ATGGAAGCGTATTCAA
Lactobacillus plantarum WCFS1 lp_3051 -36 4.7 ATGATAGCGATTACAA
Lactobacillus reuteri JCM 1112 LAR_0029 -39 4.4 ATGGAATCGTATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -147 4.2 TTTGTAACGCTTTCAT
-55 4.1 CGGTAAGCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0276 -104 4.1 ATAAAAACGTTTAACT
-71 4.7 TTGTAAACGGATACAT
-15 4 AAGAAGGCGTTTAAAA
Position: -58
Score: 4.5
Sequence: TCGTAAGCGGTTTCAT
Locus tag: PEPE_0281
PEPE_0281 -58 4.5 TCGTAAGCGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pts20B
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Lactobacillus plantarum WCFS1 lp_2781 -68 4.7 ATGAAAGCGGTTTATT
Oenococcus oeni PSU-1 OEOE_0338 -70 4.8 ATGAAAGCGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0281 -58 4.5 TCGTAAGCGGTTTCAT
Position: -61
Score: 4.6
Sequence: TTAAAAGCGCTTTCGT
Locus tag: PEPE_0282
PEPE_0282 -61 4.6 TTAAAAGCGCTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pts20A
Ortholog function: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2818 -89 4.6 TTGAAAACGCTTGTAA
-39 4.3 CAGAAAACGATTACAT
Lactobacillus plantarum WCFS1 lp_2780 -68 4.7 ATGAAAGCGGTTTATT
Lactobacillus rhamnosus GG LGG_02824 -91 4.2 CTGAAAGCGCTTGTAA
Oenococcus oeni PSU-1 OEOE_0339 -70 4.8 ATGAAAGCGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0282 -58 4.5 TCGTAAGCGGTTTCAT
Position: -103
Score: 4.3
Sequence: TTGATAGCCTTTTCAT
Locus tag: PEPE_0412
PEPE_0412 -103 4.3 TTGATAGCCTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaA
Ortholog function: GMP synthase (EC 6.3.5.2)
Lactobacillus johnsonii NCC 533 LJ0229 -120 4 ATTAAAGCGCTATTTT
Lactobacillus plantarum WCFS1 lp_0914 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0139 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1537 -75 4.2 TTGAAAGCGTAATATT
Pediococcus pentosaceus ATCC 25745 PEPE_0412 -103 4.3 TTGATAGCCTTTTCAT
Position: -77
Score: 4.1
Sequence: AAAAAAACGCTTTCTG
Locus tag: PEPE_0446
PEPE_0446 -77 4.1 AAAAAAACGCTTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgm
Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7)
Lactobacillus casei ATCC 334 LSEI_0949 -102 3.9 TTGAGCGCGTTTTCAA
Lactobacillus johnsonii NCC 533 LJ0862 -121 4.3 ATAAAAGCGTTTAATA
Lactobacillus plantarum WCFS1 lp_0764 -40 4.4 TTGTAAGCACTAACAA
Lactobacillus rhamnosus GG LGG_00921 -100 3.9 TTGAGCGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0446 -77 4.1 AAAAAAACGCTTTCTG
Position: -181
Score: 5.1
Sequence: TTGTAAGCGTTATCAT
Locus tag: PEPE_0479
PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956 LAF_0383 -179 4.9 TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112 LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0428 -174 4.8 TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1300 -200 4.3 TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Position: -204
Score: 4.7
Sequence: TTGTATCCGTTTTCAT
Locus tag: PEPE_0511
PEPE_0511 -204 4.7 TTGTATCCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rafR
Ortholog function: Raffinose utilization transcriptional regulator RafR, AraC family
Lactobacillus acidophilus NCFM LBA1443 -206 5 TTTTAAGCGCTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0511 -204 4.7 TTGTATCCGTTTTCAT
Position: -46
Score: 4.7
Sequence: ATGAAAACGGATACAA
Locus tag: PEPE_0512
PEPE_0512 -46 4.7 ATGAAAACGGATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacS
Ortholog function: Lactose and galactose permease
Lactobacillus johnsonii NCC 533 LJ0260 -70 4.2 TATAAAGCGTATACAT
-36 4.8 TTGAAAGCGAATACAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0880 -53 5.1 ATGAAAGCGCTTACTA
Pediococcus pentosaceus ATCC 25745 PEPE_0512 -46 4.7 ATGAAAACGGATACAA
Position: -212
Score: 4.3
Sequence: ATAAAACCGCTTACAC
Position: -58
Score: 4.1
Sequence: TGTAAAGCGCTTGCAT
Locus tag: PEPE_0518
PEPE_0518 -212 4.3 ATAAAACCGCTTACAC
-58 4.1 TGTAAAGCGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0401 -219 4.7 ATGTAAGCGTTATCTT
-30 4.9 ATAAAAGCGTTTACAT
Lactobacillus fermentum IFO 3956 LAF_1578 -126 4.4 TTGGCAGCGATTTCAA
-57 4.5 AGAAAAGCGCTTACAA
Lactobacillus johnsonii NCC 533 LJ0519 -214 4.6 ATGTAAACGCATTCTT
-37 4.4 TTTAAAACGCTTACAC
Lactobacillus plantarum WCFS1 lp_0185 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1792 -183 4.2 ATGTAAACGTTTGATA
-54 4.5 TGAAAAGCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0066 -52 4.2 CATTAAGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0518 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Position: -59
Score: 4.6
Sequence: GTGTAAGCGGTTTTAT
Locus tag: PEPE_0519
PEPE_0519 -59 4.6 GTGTAAGCGGTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrB
Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Lactobacillus acidophilus NCFM LBA0400 -220 4.9 ATGTAAACGCTTTTAT
-188 4.5 ATGATAACGTATTCAA
-31 4.6 AAGATAACGCTTACAT
Lactobacillus johnsonii NCC 533 LJ0518 -214 4.7 GTGTAAGCGTTTTAAA
-184 4.3 ATGATAGCGTATTCTA
-37 4.6 AAGAATGCGTTTACAT
Lactobacillus plantarum WCFS1 lp_0187 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Lactobacillus sakei subsp. sakei 23K LSA1793 -188 4.5 TTGTAAACGCTTTTCA
-163 4.3 ATACAACCGTTTACAT
-59 4.1 TATCAAACGTTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0065 -121 4.1 ATTTAACCGCTTTTTT
-33 4.5 AAGAATACGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0519 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Position: -127
Score: 4
Sequence: ATGTAAGGGCTTGCTT
Locus tag: PEPE_0609
PEPE_0609 -127 4 ATGTAAGGGCTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: Phosphotransferase system, HPr-related protein
Lactobacillus acidophilus NCFM LBA0639 -111 4.4 ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0512 -108 4.7 ATGAAAACATTTACAA
Lactobacillus helveticus DPC 4571 lhv_0686 -109 4.4 ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533 LJ0816 -109 4.6 ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1 lp_1273 -135 4 ATGAAAGGGCTTGTAT
Lactobacillus reuteri JCM 1112 LAR_1256 -102 4 TATTTAACGCTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0388 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1780 -157 5.3 ATGTAAACGTTTTCAT
-63 4.7 TTGTAAGCGCTTTGAT
Pediococcus pentosaceus ATCC 25745 PEPE_0609 -127 4 ATGTAAGGGCTTGCTT
Position: -88
Score: 4.8
Sequence: GTGAAAGCGCTAACAT
Locus tag: PEPE_0697
PEPE_0697 -88 4.8 GTGAAAGCGCTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lrgA
Ortholog function: Antiholin-like protein LrgA
Lactobacillus brevis ATCC 367 LVIS_0621 -235 4.4 GTGTAAGCGTTTCCTT
Lactobacillus reuteri JCM 1112 LAR_0851 -101 4.4 GTGAAAACGAATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0697 -88 4.8 GTGAAAGCGCTAACAT
Position: -39
Score: 4.4
Sequence: ATGAAAGCGCTTCATA
Locus tag: PEPE_0968
PEPE_0968 -39 4.4 ATGAAAGCGCTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus brevis ATCC 367 LVIS_0357 -71 4.2 ATGAAAGCGGTGCCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1282 -59 4.5 AAGAATGCGATTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0968 -39 4.4 ATGAAAGCGCTTCATA
Position: -116
Score: 4
Sequence: AATAAAGCACTTACAT
Locus tag: PEPE_1093
PEPE_1093 -116 4 AATAAAGCACTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfk
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Lactobacillus acidophilus NCFM LBA0956 -134 4.2 ATGTAAGTGCTAACAT
Lactobacillus helveticus DPC 4571 lhv_1049 -136 4.2 ATGTAAGTGCTAACAT
Lactobacillus johnsonii NCC 533 LJ1079 -132 4.5 TTGAAAGCGAAAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1093 -116 4 AATAAAGCACTTACAT
Position: -6
Score: 4.3
Sequence: ATGAAAGTGCTTACAG
Locus tag: PEPE_1166
PEPE_1166 -6 4.3 ATGAAAGTGCTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family
Lactobacillus acidophilus NCFM LBA1779 -37 4.2 GAGAAAGCGAATACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1889 -164 4 GAGAAAGCCTTTACAA
Lactobacillus helveticus DPC 4571 lhv_1846 12 4.3 GAGAAAGCGGATACAA
Lactobacillus johnsonii NCC 533 LJ0570 -40 4.1 CTGAAAGCGTTTATCA
Lactobacillus plantarum WCFS1 lp_2095 -6 4.3 TTGAAAGTGCTTACAG
Lactobacillus sakei subsp. sakei 23K LSA1048 -130 4 ATGAAAACCTTTACAC
-40 4.3 TTGTAAACGATGACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1166 -6 4.3 ATGAAAGTGCTTACAG
Position: -69
Score: 4.6
Sequence: TTGATAACGTATTCAT
Locus tag: PEPE_1250
PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -109
Score: 4.6
Sequence: ATGAATACGTTATCAA
Locus tag: PEPE_1251
PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -38
Score: 4.6
Sequence: ACGAAAACGTTTTCAA
Locus tag: PEPE_1252
PEPE_1252 -38 4.6 ACGAAAACGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus plantarum WCFS1 lp_2629 -41 4.1 ACGAAAACGTATACAA
Lactobacillus sakei subsp. sakei 23K LSA1188 -89 4.8 TTGTAATCGATTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1372 -53 4.6 AAGAAAACGTTTGCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1252 -38 4.6 ACGAAAACGTTTTCAA
Position: -21
Score: 4.3
Sequence: ATGAAAGGGGTTTTAT
Locus tag: PEPE_1334
PEPE_1334 -21 4.3 ATGAAAGGGGTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pmi
Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Lactobacillus acidophilus NCFM LBA0745 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus brevis ATCC 367 LVIS_1656 -86 4.8 TAGAAAGCGCTTGCAA
Lactobacillus helveticus DPC 4571 lhv_0789 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus johnsonii NCC 533 LJ0916 -60 4.6 TTGAAAGTGGTTTCAA
Lactobacillus sakei subsp. sakei 23K LSA1146 -99 4.1 ACGAAATCGCTTTAAA
Oenococcus oeni PSU-1 OEOE_0249 -30 4.9 ATGATAACGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1334 -21 4.3 ATGAAAGGGGTTTTAT
Position: -35
Score: 4.7
Sequence: AAGAAAGCGGTTACTT
Locus tag: PEPE_1360
PEPE_1360 -35 4.7 AAGAAAGCGGTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: H+/gluconate symporter related permease
Lactobacillus brevis ATCC 367 LVIS_1586 -19 4.5 ATGAAAGGGCTTACTT
Lactobacillus casei ATCC 334 LSEI_0229 -43 4.9 TTGTAAGCGATTTCTT
Lactobacillus rhamnosus GG LGG_00277 -194 4.7 TTGTAAGCGGTTTCTG
Lactobacillus sakei subsp. sakei 23K LSA0299 -36 4.5 ATGTAAACGCAAACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1360 -35 4.7 AAGAAAGCGGTTACTT
Position: -146
Score: 4.5
Sequence: TTGAAAGCGTTTTTTG
Locus tag: PEPE_1518
PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -81
Score: 4.7
Sequence: TTATAAGCGTTTTAAT
Position: -66
Score: 4.1
Sequence: TTGTAAGCGGTTCACA
Position: 7
Score: 3.8
Sequence: AAGTAAAAGTTATCAT
Locus tag: PEPE_1619
PEPE_1619 -81 4.7 TTATAAGCGTTTTAAT
-66 4.1 TTGTAAGCGGTTCACA
7 3.8 AAGTAAAAGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcaD
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus acidophilus NCFM LBA1401 -52 4.4 ATGAAAGAGGTTACAA
Lactobacillus plantarum WCFS1 lp_2544 -200 4.3 TTGTAACCGTTTTAGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0137 -56 3.8 GTGAAAACGTTCTATA
Pediococcus pentosaceus ATCC 25745 PEPE_1619 -81 4.7 TTATAAGCGTTTTAAT
-66 4.1 TTGTAAGCGGTTCACA
Position: -51
Score: 5
Sequence: TAGAAAGCGCTTTCTT
Locus tag: PEPE_1623
PEPE_1623 -51 5 TAGAAAGCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus plantarum WCFS1 lp_0370 -46 5 ATGATAGCGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1623 -84 4.2 TTAAAAACGATTTATA
-51 5 TAGAAAGCGCTTTCTT
Position: -119
Score: 5
Sequence: ATGAAAACGTTTTAAA
Position: -55
Score: 4.5
Sequence: GTGAAAGCGCTTGCTA
Locus tag: PEPE_1631
PEPE_1631 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Ornithine carbamoyltransferase (EC 2.1.3.3)
Lactobacillus fermentum IFO 3956 LAF_0298 -65 4.7 TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112 LAR_0419 -144 4.2 TTGTTTCCGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1631 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Position: -167
Score: 4.9
Sequence: TTTAAAACGTTTTCAT
Locus tag: PEPE_1632
PEPE_1632 -167 4.9 TTTAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbB
Ortholog function: Signal transduction response regulator
Lactobacillus brevis ATCC 367 LVIS_2030 -65 4.7 TAGAAAGCGTTTTCGT
Pediococcus pentosaceus ATCC 25745 PEPE_1632 -231 4.3 TAGCAAGCGCTTTCAC
-167 4.9 TTTAAAACGTTTTCAT
Position: -63
Score: 4.8
Sequence: TTGTAATCGCTTTCTA
Locus tag: PEPE_1662
PEPE_1662 -63 4.8 TTGTAATCGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaK
Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Lactobacillus acidophilus NCFM LBA1433 -35 4.7 TTGTAAGCGATTGCAT
Lactobacillus plantarum WCFS1 lp_0168 -58 4.6 TTGAAATCGGATTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1633 -64 5 TTGAAAGCGTTTATAT
Pediococcus pentosaceus ATCC 25745 PEPE_1662 -63 4.8 TTGTAATCGCTTTCTA
Position: -65
Score: 4.9
Sequence: ATTAAAACGTTTTCAT
Locus tag: PEPE_1699
PEPE_1699 -65 4.9 ATTAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM LBA0587 -61 4.1 TTGGATGCGTTTTTTT
Lactobacillus plantarum WCFS1 lp_3660 -72 4.9 ATTAAAACGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1699 -65 4.9 ATTAAAACGTTTTCAT
Position: -140
Score: 4.2
Sequence: ATATAAGCGTTTAATT
Locus tag: PEPE_1700
PEPE_1700 -140 4.2 ATATAAGCGTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon transcriptional regulator, LacI family
Lactobacillus casei ATCC 334 LSEI_0306 -88 4.5 TTGACAGCGCTTCCAA
Lactobacillus rhamnosus GG LGG_00372 -89 4.5 TTGACAGCGCTTCCAT
Lactobacillus sakei subsp. sakei 23K LSA0203 -114 4.3 TGTAAACCGTTTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0795 -76 5.1 ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_0146 -45 4.6 TTGTAAACGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_1700 -140 4.2 ATATAAGCGTTTAATT
Position: -76
Score: 4.3
Sequence: AAGAAAGCCTTTACAT
Locus tag: PEPE_1763
PEPE_1763 -76 4.3 AAGAAAGCCTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacX
Ortholog function: Aldose 1-epimerase
Lactobacillus casei ATCC 334 LSEI_2598 -36 4.5 TTGAATGCGTTTTCGT
Lactobacillus johnsonii NCC 533 LJ0171 -84 4.2 ATGTTATCGCTTACAG
Lactobacillus rhamnosus GG LGG_02577 -36 4.7 ATGAATGCGTTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_1763 -76 4.3 AAGAAAGCCTTTACAT
Position: -40
Score: 4.8
Sequence: TAGAAAGCGCTTCCAT
Locus tag: PEPE_1774
PEPE_1774 -40 4.8 TAGAAAGCGCTTCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplA1
Ortholog function: Lipoate-protein ligase A
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0736 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0327 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1774 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -34
Score: 4.8
Sequence: ATGAAAGCGAATTCAA
Locus tag: PEPE_1776
PEPE_1776 -34 4.8 ATGAAAGCGAATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglB
Ortholog function: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
Lactobacillus acidophilus NCFM LBA0885 -35 4.8 ATGAAAGCGATTACAG
Lactobacillus helveticus DPC 4571 lhv_0941 -34 4 CTGAAAGCACTTACAG
Lactobacillus johnsonii NCC 533 LJ0194 -28 4.7 ATGTAAGCGATTGCAA
Lactobacillus plantarum WCFS1 lp_3011 -43 4.5 AGGAAAGCGTTTTCCA
Oenococcus oeni PSU-1 OEOE_1210 -93 4.5 ATGGTAGCGATTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1776 -34 4.8 ATGAAAGCGAATTCAA
Position: -141
Score: 4.7
Sequence: TTGAATTCGCTTTCAT
Locus tag: PEPE_1777
PEPE_1777 -141 4.7 TTGAATTCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lhv_0924
Ortholog function: Predicted transcriptional regulator, GntR family
Lactobacillus helveticus DPC 4571 lhv_0924 -236 5.2 TTGTAAGCGATTTCAA
-149 4.7 TAGGAACCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0152 -193 4.2 ATGTAGCCGGTTACAT
Lactobacillus rhamnosus GG LGG_02679 -170 4.7 TTAAATGCGCTTTCAT
Oenococcus oeni PSU-1 OEOE_1211 -167 4.4 ATGAAATCGCTACCAT
-115 4 ATGTAAACTCTTTTTT
Pediococcus pentosaceus ATCC 25745 PEPE_1777 -141 4.7 TTGAATTCGCTTTCAT
Position: -199
Score: 4.6
Sequence: TTAGAAACGCTTACAT
Position: -56
Score: 4.7
Sequence: TAGCAAGCGCTTACAA
Locus tag: PEPE_1804
PEPE_1804 -199 4.6 TTAGAAACGCTTACAT
-56 4.7 TAGCAAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA1012 -96 4.3 TTGTGATCGCTTTCAA
-29 4.8 ATGAAAACGCTTTATA
Lactobacillus casei ATCC 334 LSEI_0631 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0760 -104 4.4 AAGTAAGCTTTTTCAT
-36 4.5 ATGAAAGCGGATACTT
Lactobacillus plantarum WCFS1 lp_3240 -118 4.8 AAGAAAGCGCTTTTAT
Lactobacillus plantarum WCFS1 lp_0264 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00603 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1200 -105 4.4 TTGTAAACGGTTCAAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1512 -96 4.5 TTGTAAACAATTTCAT
-27 4.1 AAGAAAAGGTTTTCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0507 -86 5.1 TTGTAACCGTTTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0508 -86 5.1 TTGTAACCGTTTACAT
Oenococcus oeni PSU-1 OEOE_1342 -96 4.5 TTGAAAACGCTTTATG
Oenococcus oeni PSU-1 OEOE_1341 -96 4.5 TTGAAAACGCTTTATG
Pediococcus pentosaceus ATCC 25745 PEPE_1804 -199 4.6 TTAGAAACGCTTACAT
-56 4.7 TAGCAAGCGCTTACAA
Position: -177
Score: 4.7
Sequence: TTGTAAGCGCTTGCTA
Position: -34
Score: 4.6
Sequence: ATGTAAGCGTTTCTAA
Locus tag: PEPE_1805
PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -55
Score: 4.8
Sequence: ATGAAAGCGTATTCTT
Locus tag: PEPE_1821
PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM LBA1632 -66 4.7 TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367 LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334 LSEI_2278 -18 4.1 AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956 LAF_0045 -62 4.3 GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533 LJ0671 -44 4.6 AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1 lp_3092 -45 4 GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112 LAR_0033 -132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
© 2009-2020 RegPrecise