Propagation of HrcA regulog to Lactobacillus sakei subsp. sakei 23K
| Source regulog: | HrcA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus sakei subsp. sakei 23K |
| Orthologous TF(s) | LSA1238 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -121
Score: 5.9 Sequence: GTGGCACTTTTCTTGCTAGAGTGCTAA
Locus tag: LSA0207
|
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| LSA0207 | -121 | 5.9 | GTGGCACTTTTCTTGCTAGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpC | ||||
| Ortholog function: ATP-dependent Clp protease ATP-binding subunit ClpA | ||||
| Lactobacillus acidophilus NCFM | LBA1910 | -57 | 6.9 | TTAGCACTCAACGCACTAGAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_2043 | -59 | 5.9 | TTAGCACTTGAAGGCTTTAAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ1775 | -58 | 6.7 | TTAGCACTTATAACTTATGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0207 | -121 | 5.9 | GTGGCACTTTTCTTGCTAGAGTGCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0976 | -122 | 6.9 | TTAGCACTTTACTTAACAGAGTGCTAA |
|
Position: -55
Score: 6.8 Sequence: TTAGCACTTGAGTGTTTAGAGTGCTAA
Locus tag: LSA0358
|
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| LSA0358 | -55 | 6.8 | TTAGCACTTGAGTGTTTAGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: groS | ||||
| Ortholog function: Heat shock protein 60 family co-chaperone GroES | ||||
| Lactobacillus acidophilus NCFM | LBA0405 | -159 | 7.6 | TTAGCACTTTTTTATAAAGAGTGCTAA |
| -84 | 6.8 | TTAGCACTTAACTAAAAGGAGTGCTAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_0617 | -62 | 6.4 | TTAGCACTTATGTTAGTCAAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1497 | -140 | 6.5 | TTAGCACTCTCGACTAAAAAGTGCTAT |
| -65 | 6.7 | TTAGCACTTGATCAAGATGAGTGCTAA | ||
| Lactobacillus fermentum IFO 3956 | LAF_0325 | -87 | 5.7 | TTAGCACTTGAGGGGGTTGAGTGCTAG |
| Lactobacillus helveticus DPC 4571 | lhv_0425 | -159 | 6.9 | TTAGCACTATTTGTAAAAAAGTGCTAA |
| -85 | 7.1 | TTAGCACTTAAGAAATAAGAGTGCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_0727 | -51 | 6.4 | TTAGCACTTGAGGTTGAGGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_0342 | -61 | 6.5 | TTAGCACTTGAAGAGTTTGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0358 | -55 | 6.8 | TTAGCACTTGAGTGTTTAGAGTGCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1212 | -135 | 6.4 | TTAGCACTCTAATGTGTCGAGTGATAA |
| -61 | 7 | TTAGCACTCAAGAGTTGAGAGTGCTAA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1763 | -54 | 7.5 | TTAGCACTCACGTTTAAAGAGTGCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0420 | -65 | 6.3 | TTAGCACTTAGAGATGACGAGTGCTAA |
|
Position: -41
Score: 7 Sequence: TTAGCACTCGTAATAATCAAGTGCTAA
Locus tag: LSA1238
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| LSA1238 | -41 | 7 | TTAGCACTCGTAATAATCAAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hrcA | ||||
| Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family | ||||
| Lactobacillus acidophilus NCFM | LBA1249 | -93 | 6.1 | TTAGCACTCAGGTTGCATTATTGCTAA |
| -45 | 6.1 | TTAGCACCTGATAGATGTGAGTGCTAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_1331 | -127 | 6.1 | TTAGCACTTAATTACGTTGATTGCTAA |
| -43 | 6.9 | TTAGCACTTGTGTTGTTTGAGTGCTAA | ||
| Lactobacillus casei ATCC 334 | LSEI_1567 | -42 | 7.6 | TTAGCACTCATATAAAACGAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1229 | -92 | 5.7 | TTAGCATTCTCCTTGACTAACTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0749 | -33 | 6.4 | TTAGCACTTAGATGGCCAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ1481 | -91 | 6.4 | TTAGCACTCTACTTGAACAATTGCTAA |
| -43 | 6.3 | TTAGCACAGAAGAAAGAAGAGTGCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_2029 | -191 | 7.1 | TTAGCACTCGTAAGTAAGGAGTGCTAA |
| -36 | 6.7 | TTAGCACTCCATTAAGTTAAGTGCTAA | ||
| Lactobacillus reuteri JCM 1112 | LAR_0677 | -45 | 6.5 | TTAGCACTTGACCCTAATGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_01606 | -42 | 7.6 | TTAGCACTCGTGTAAAACGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1238 | -41 | 7 | TTAGCACTCGTAATAATCAAGTGCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0576 | -41 | 6.6 | TTAGCACTCTAATGTGTTAAGTGCTAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1349 | -110 | 7.4 | TTGGCACTCTTATAAAAAGAGTGCTAA |
| -41 | 6.3 | TTAGCAGTTAGATATAGTGAGTGCTAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0894 | -41 | 6.4 | TTAGCACTCCAACTTTCTAAGTGCTAA |