Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HrcA regulog to Lactobacillus sakei subsp. sakei 23K

Reference regulog properties
Source regulog: HrcA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus sakei subsp. sakei 23K
Orthologous TF(s) LSA1238
Regulated genes 3
Built upon 69 sites [see more]
Predicted regulatory interactions in Lactobacillus sakei subsp. sakei 23K
Locus tag Position Score Sequence
Position: -121
Score: 5.9
Sequence: GTGGCACTTTTCTTGCTAGAGTGCTAA
Locus tag: LSA0207
LSA0207 -121 5.9 GTGGCACTTTTCTTGCTAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpC
Ortholog function: ATP-dependent Clp protease ATP-binding subunit ClpA
Lactobacillus acidophilus NCFM LBA1910 -57 6.9 TTAGCACTCAACGCACTAGAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_2043 -59 5.9 TTAGCACTTGAAGGCTTTAAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1775 -58 6.7 TTAGCACTTATAACTTATGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0207 -121 5.9 GTGGCACTTTTCTTGCTAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0976 -122 6.9 TTAGCACTTTACTTAACAGAGTGCTAA
Position: -55
Score: 6.8
Sequence: TTAGCACTTGAGTGTTTAGAGTGCTAA
Locus tag: LSA0358
LSA0358 -55 6.8 TTAGCACTTGAGTGTTTAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: groS
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Lactobacillus acidophilus NCFM LBA0405 -159 7.6 TTAGCACTTTTTTATAAAGAGTGCTAA
-84 6.8 TTAGCACTTAACTAAAAGGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_0617 -62 6.4 TTAGCACTTATGTTAGTCAAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1497 -140 6.5 TTAGCACTCTCGACTAAAAAGTGCTAT
-65 6.7 TTAGCACTTGATCAAGATGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0325 -87 5.7 TTAGCACTTGAGGGGGTTGAGTGCTAG
Lactobacillus helveticus DPC 4571 lhv_0425 -159 6.9 TTAGCACTATTTGTAAAAAAGTGCTAA
-85 7.1 TTAGCACTTAAGAAATAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_0727 -51 6.4 TTAGCACTTGAGGTTGAGGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0342 -61 6.5 TTAGCACTTGAAGAGTTTGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0358 -55 6.8 TTAGCACTTGAGTGTTTAGAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1212 -135 6.4 TTAGCACTCTAATGTGTCGAGTGATAA
-61 7 TTAGCACTCAAGAGTTGAGAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1763 -54 7.5 TTAGCACTCACGTTTAAAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0420 -65 6.3 TTAGCACTTAGAGATGACGAGTGCTAA
Position: -41
Score: 7
Sequence: TTAGCACTCGTAATAATCAAGTGCTAA
Locus tag: LSA1238
LSA1238 -41 7 TTAGCACTCGTAATAATCAAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hrcA
Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family
Lactobacillus acidophilus NCFM LBA1249 -93 6.1 TTAGCACTCAGGTTGCATTATTGCTAA
-45 6.1 TTAGCACCTGATAGATGTGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1331 -127 6.1 TTAGCACTTAATTACGTTGATTGCTAA
-43 6.9 TTAGCACTTGTGTTGTTTGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_1567 -42 7.6 TTAGCACTCATATAAAACGAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1229 -92 5.7 TTAGCATTCTCCTTGACTAACTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0749 -33 6.4 TTAGCACTTAGATGGCCAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1481 -91 6.4 TTAGCACTCTACTTGAACAATTGCTAA
-43 6.3 TTAGCACAGAAGAAAGAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_2029 -191 7.1 TTAGCACTCGTAAGTAAGGAGTGCTAA
-36 6.7 TTAGCACTCCATTAAGTTAAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0677 -45 6.5 TTAGCACTTGACCCTAATGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01606 -42 7.6 TTAGCACTCGTGTAAAACGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA1238 -41 7 TTAGCACTCGTAATAATCAAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0576 -41 6.6 TTAGCACTCTAATGTGTTAAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1349 -110 7.4 TTGGCACTCTTATAAAAAGAGTGCTAA
-41 6.3 TTAGCAGTTAGATATAGTGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0894 -41 6.4 TTAGCACTCCAACTTTCTAAGTGCTAA
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