Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NrdR regulog to Carnobacterium sp. AT7

Reference regulog properties
Source regulog: NrdR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Firmicutes
Propagated regulon:
Target genome Carnobacterium sp. AT7
Orthologous TF(s) CAT7_02132
Regulated genes 2
Built upon 81 sites [see more]
Predicted regulatory interactions in Carnobacterium sp. AT7
Locus tag Position Score Sequence
Position: -47
Score: 4.5
Sequence: CGACTATATATAGTGC
Locus tag: CAT7_06988
CAT7_06988 -47 4.5 CGACTATATATAGTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Lactobacillus acidophilus NCFM LBA0160 -58 4.5 ATACAAGATGTTGTGC
Lactobacillus casei ATCC 334 LSEI_0131 -133 5 ACACACTATATAGTGT
-131 5.5 ACACTATATAGTGTAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0185 -173 5.3 CCACAATATCTGGTAT
-131 4.6 AAACAAGATGTAGTGG
Lactobacillus fermentum IFO 3956 LAF_1376 -99 4.7 CCACAAGATCTTGTAA
-68 5.3 AAACTATATGTTGTGT
Lactobacillus helveticus DPC 4571 lhv_0169 -56 5.1 ATACAAGATGTTGTAT
Lactobacillus johnsonii NCC 533 LJ0137 -63 4.6 CTACAATATCATGTAG
Lactobacillus plantarum WCFS1 lp_2932 -80 5.5 CTACTATATATAGTAT
-49 4.4 GCACTATCAATTGTAT
Lactobacillus reuteri JCM 1112 LAR_1249 -92 5.3 CCACAACATATAGTGT
Lactobacillus rhamnosus GG LGG_00138 -131 5.5 CCACTATATAGTGTAT
Lactobacillus sakei subsp. sakei 23K LSA1459 -75 5.1 ACACTATATATAGTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1332 -108 5.5 ATACTATATATAGTGT
-76 5.9 ACACTATATATTGTAT
Pediococcus pentosaceus ATCC 25745 PEPE_0484 -133 5.7 ATACTATATATTGTAT
Position: -152
Score: 4.8
Sequence: ACACTATATATAGAAG
Position: -112
Score: 5.5
Sequence: CCACTATATATAGTGG
Locus tag: CAT7_02382
CAT7_02382 -152 4.8 ACACTATATATAGAAG
-112 5.5 CCACTATATATAGTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdH
Ortholog function: Glutaredoxin-like protein NrdH
Lactobacillus plantarum WCFS1 lp_0694 -86 4.6 ACCCTAGATGTTGTGT
-54 4.7 TCACCACATGTTGTAT
Pediococcus pentosaceus ATCC 25745 PEPE_1487 -122 5.3 GCACAATATATAGTGG