Regulog CcpB - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	unknown
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - LacI
By pathway - unknown

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334	2	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	2	1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG	2	1
Lactobacillus sakei subsp. sakei 23K	2	1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
ccpB	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2269: Sugar utilization transcriptional regulator CcpB, LacI family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -92 score = 4.9868 sequence = CTGGTACCGGTTTCAC Gene: lp_2602: Sugar utilization transcriptional regulator CcpB, LacI family	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_02273: Sugar utilization transcriptional regulator CcpB, LacI family	Lactobacillus sakei subsp. sakei 23K Gene: LSA1554: Sugar utilization transcriptional regulator CcpB, LacI family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Sugar utilization transcriptional regulator CcpB, LacI family
ywbB	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	* Lactobacillus casei ATCC 334 Site: position = -259 score = 5.98738 sequence = CTGAAACGCGTTACAG Gene: LSEI_2268: Predicted sugar phosphate hydrolase, HAD superfamily	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2601: Predicted sugar phosphate hydrolase, HAD superfamily	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -240 score = 5.81244 sequence = CTGTAACGCGTTACAC Gene: LGG_02272: Predicted sugar phosphate hydrolase, HAD superfamily	* Lactobacillus sakei subsp. sakei 23K Site: position = -56 score = 5.29465 sequence = CTGGGACGCGTTTCAT Gene: LSA1553: Predicted sugar phosphate hydrolase, HAD superfamily	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Predicted sugar phosphate hydrolase, HAD superfamily

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CcpB - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --