Regulog LacR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Lactose utilization |
| Effector: | Lactose |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - LacI
- By effector - Lactose
- By pathway - Lactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | 1 | 1 |
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 3 | 2 |
| Lactobacillus helveticus DPC 4571 | 1 | 1 |
| Lactobacillus johnsonii NCC 533 | 3 | 2 |
| Lactobacillus plantarum WCFS1 | 3 | 2 |
| Lactobacillus reuteri JCM 1112 | 2 | 1 |
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 3 | 2 |
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| lacR |
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Lactobacillus acidophilus NCFM Site: position = -65 score = 4.66551 sequence = GGAATTGAGTAAATATT Gene: LBA1465: Lactose utilization transcriptional regulator, LacI family |
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Lactobacillus fermentum IFO 3956 Site: position = -185 score = 5.49547 sequence = GTTAATTAGTAAATATT Gene: LAF_0781: Lactose utilization transcriptional regulator, LacI family |
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Lactobacillus helveticus DPC 4571 Site: position = -64 score = 5.29641 sequence = GGAATTTAGTAAATATT Gene: lhv_1547: Lactose utilization transcriptional regulator, LacI family |
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Lactobacillus johnsonii NCC 533 Site: position = -152 score = 4.54057 sequence = ATAATTTACTCAAAAAT Gene: LJ0856: Lactose utilization transcriptional regulator, LacI family |
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Lactobacillus plantarum WCFS1 Site: position = -155 score = 5.61286 sequence = AATAATTACTAAATATC Gene: lp_3470: Lactose utilization transcriptional regulator, LacI family |
Gene: LAR_1034: Lactose utilization transcriptional regulator, LacI family |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -119 score = 5.35277 sequence = AAAAATTAGTAAATGAT Gene: LEUM_1063: Lactose utilization transcriptional regulator, LacI family |
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Lactose utilization transcriptional regulator, LacI family |
| CRON 2. | ||||||||||||||||
| lacS |
Gene: LBA1463: Lactose and galactose permease, GPH translocator family |
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Gene: LAF_0779: Lactose and galactose permease, GPH translocator family |
Gene: lhv_1543: Lactose and galactose permease, GPH translocator family |
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Lactobacillus johnsonii NCC 533 Site: position = -112 score = 5.49202 sequence = TATATTTAGTAAATTAT Gene: LJ0857: Lactose and galactose permease, GPH translocator family |
Gene: lp_3468: Lactose and galactose permease, GPH translocator family |
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Lactobacillus reuteri JCM 1112 Site: position = -79 score = 5.15585 sequence = AATATTTACTAAAATTA Gene: LAR_1033: Lactose and galactose permease, GPH translocator family |
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Gene: LEUM_1065: Lactose and galactose permease, GPH translocator family |
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Lactose and galactose permease, GPH translocator family |
| lacZ |
Gene: LBA1462: Beta-galactosidase (EC 3.2.1.23) |
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Lactobacillus fermentum IFO 3956 Site: position = -112 score = 5.49547 sequence = AATATTTACTAATTAAC Gene: LAF_0780: Beta-galactosidase (EC 3.2.1.23) |
Gene: lhv_1542: Beta-galactosidase (EC 3.2.1.23) |
Gene: LJ0858: Beta-galactosidase (EC 3.2.1.23) |
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Lactobacillus plantarum WCFS1 Site: position = -108 score = 5.61286 sequence = GATATTTAGTAATTATT Gene: lp_3469: Beta-galactosidase (EC 3.2.1.23) |
Gene: LAR_1032: Beta-galactosidase (EC 3.2.1.23) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -110 score = 5.35277 sequence = ATCATTTACTAATTTTT Gene: LEUM_1064: Beta-galactosidase (EC 3.2.1.23) |
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Beta-galactosidase (EC 3.2.1.23) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |