Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcpN regulog to Lactobacillus sakei subsp. sakei 23K

Reference regulog properties
Source regulog: CcpN - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: CcpN
Regulation mode: repressor
Biological process: Gluconeogenesis
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus sakei subsp. sakei 23K
Orthologous TF(s) LSA1142
Regulated genes 2
Built upon 6 sites [see more]
Predicted regulatory interactions in Lactobacillus sakei subsp. sakei 23K
Locus tag Position Score Sequence
Position: -55
Score: 5.4
Sequence: TTGTAATGTGACACACTATAT
Locus tag: LSA1141
LSA1141 -55 5.4 TTGTAATGTGACACACTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdK
Ortholog function: Pyruvate phosphate dikinase (EC 2.7.9.1)
Lactobacillus casei ATCC 334 LSEI_2334 -196 4.7 TTTTTAAATATCTCATTGAAA
-66 5 TTCAAAAATAATACATTATAA
Lactobacillus rhamnosus GG LGG_02351 -66 4.7 CTGCTAAATAATACATTATAT
Lactobacillus sakei subsp. sakei 23K LSA1141 -55 5.4 TTGTAATGTGACACACTATAT
Position: -138
Score: 5.4
Sequence: ATATAGTGTGTCACATTACAA
Locus tag: LSA1142
LSA1142 -138 5.4 ATATAGTGTGTCACATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpN
Ortholog function: Gluconeogenesis transcriptional regulator CcpN, CcpN family
Lactobacillus sakei subsp. sakei 23K LSA1142 -138 5.4 ATATAGTGTGTCACATTACAA
Oenococcus oeni PSU-1 OEOE_1329 -144 4.4 TAATTATGTTTAATAAAAAAA
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