Statistics of regulated genes

Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334	1	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG	1	1
Lactobacillus sakei subsp. sakei 23K	3	2
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1	1	1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
ccpN	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2335: Gluconeogenesis transcriptional regulator CcpN, CcpN family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_02352: Gluconeogenesis transcriptional regulator CcpN, CcpN family	* Lactobacillus sakei subsp. sakei 23K Site: position = -138 score = 5.43934 sequence = ATATAGTGTGTCACATTACAA Gene: LSA1142: Gluconeogenesis transcriptional regulator CcpN, CcpN family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	* Oenococcus oeni PSU-1 Site: position = -144 score = 4.44169 sequence = TAATTATGTTTAATAAAAAAA Gene: OEOE_1329: Gluconeogenesis transcriptional regulator CcpN, CcpN family	Pediococcus pentosaceus ATCC 25745	Gluconeogenesis transcriptional regulator CcpN, CcpN family
yqfL	Lactobacillus acidophilus NCFM Gene: LBA1206: Predicted phosphotransferase	Lactobacillus brevis ATCC 367 Gene: LVIS_0743: Predicted phosphotransferase	Lactobacillus casei ATCC 334 Gene: LSEI_1522: Predicted phosphotransferase	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1174: Predicted phosphotransferase	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571 Gene: lhv_1306: Predicted phosphotransferase	Lactobacillus johnsonii NCC 533 Gene: LJ1326: Predicted phosphotransferase	Lactobacillus plantarum WCFS1 Gene: lp_1974: Predicted phosphotransferase	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_01557: Predicted phosphotransferase	2 Lactobacillus sakei subsp. sakei 23K Gene: LSA1143: Predicted phosphotransferase Gene: LSA0872: Predicted phosphotransferase	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0699: Predicted phosphotransferase	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1110: Predicted phosphotransferase	Predicted phosphotransferase
CRON 2.
ppdK	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	* Lactobacillus casei ATCC 334 Site: position = -196 score = 4.68792 sequence = TTTTTAAATATCTCATTGAAA Site: position = -66 score = 5.0318 sequence = TTCAAAAATAATACATTATAA Gene: LSEI_2334: Pyruvate phosphate dikinase (EC 2.7.9.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -66 score = 4.66211 sequence = CTGCTAAATAATACATTATAT Gene: LGG_02351: Pyruvate phosphate dikinase (EC 2.7.9.1)	* Lactobacillus sakei subsp. sakei 23K Site: position = -55 score = 5.43934 sequence = TTGTAATGTGACACACTATAT Gene: LSA1141: Pyruvate phosphate dikinase (EC 2.7.9.1)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Pyruvate phosphate dikinase (EC 2.7.9.1)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD