Propagation of TreR regulog to Lactobacillus acidophilus NCFM
| Source regulog: | TreR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Trehalose utilization |
| Effector: | Trehalose-6-phosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus acidophilus NCFM |
| Orthologous TF(s) | LBA1013 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -146
Score: 5.4 Sequence: ATAAATGTATAGACAAGTAA
Position: -68
Score: 6.5 Sequence: CAACTTGTATATACAAGTTT
Locus tag: LBA1012
|
||||
| LBA1012 | -146 | 5.4 | ATAAATGTATAGACAAGTAA | |
| -68 | 6.5 | CAACTTGTATATACAAGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treP | ||||
| Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA1012 | -146 | 5.4 | ATAAATGTATAGACAAGTAA |
| -68 | 6.5 | CAACTTGTATATACAAGTTT | ||
| Lactobacillus casei ATCC 334 | LSEI_0631 | -61 | 5.2 | ATACCTGTACGTACAGGTAA |
| Lactobacillus johnsonii NCC 533 | LJ0760 | -164 | 5.2 | ACACTTGATTAGACAAGTAA |
| -75 | 6.1 | CAACTTGTACAGACAAGTAT | ||
| Lactobacillus plantarum WCFS1 | lp_0264 | -59 | 5.6 | CAACTTGTCTAAACAAGTCT |
| Lactobacillus rhamnosus GG | LGG_00603 | -61 | 5.6 | ATACCTGTACGTACAAGTAG |
| Lactobacillus sakei subsp. sakei 23K | LSA1200 | -78 | 6 | CAACTTGTCTATACATGTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1512 | -158 | 4.8 | ATAGATGTATATACAATATA |
| -68 | 6.3 | CAACTTGTATATACAAGTGA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0507 | -40 | 5.8 | TAACTAGTACGTACAAGTTG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0508 | -40 | 5.8 | TAACTAGTACGTACAAGTTG |
| Oenococcus oeni PSU-1 | OEOE_1342 | -31 | 5.5 | AAAGTTGTACGTACAAGTGA |
| Oenococcus oeni PSU-1 | OEOE_1341 | -31 | 5.5 | AAAGTTGTACGTACAAGTGA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1804 | -171 | 5.8 | TAACTAGTATATACAAGGTA |
| -95 | 6.1 | CATCTTGTATATACAAGTTT | ||
|
Position: -134
Score: 6.6 Sequence: AAACTTGTATATACAAGTTG
Position: -56
Score: 5.2 Sequence: TTACTTGTCTATACATTTAT
Locus tag: LBA1013
|
||||
| LBA1013 | -134 | 6.6 | AAACTTGTATATACAAGTTG | |
| -56 | 5.2 | TTACTTGTCTATACATTTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family | ||||
| Lactobacillus acidophilus NCFM | LBA1013 | -134 | 6.6 | AAACTTGTATATACAAGTTG |
| -56 | 5.2 | TTACTTGTCTATACATTTAT | ||
| Lactobacillus casei ATCC 334 | LSEI_0629 | -61 | 5.2 | ATACCTGTACGTACAGGTAA |
| Lactobacillus johnsonii NCC 533 | LJ0759 | 39 | 5.9 | ATACTTGTCTGTACAAGTTG |
| Lactobacillus plantarum WCFS1 | lp_0262 | -59 | 5.6 | CAACTTGTCTAAACAAGTCT |
| Lactobacillus rhamnosus GG | LGG_00601 | -61 | 5.6 | ATACCTGTACGTACAAGTAG |
| Lactobacillus sakei subsp. sakei 23K | LSA1201 | -113 | 6.1 | CAACATGTATAGACAAGTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1513 | -162 | 6.3 | TCACTTGTATATACAAGTTG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1805 | -142 | 6.2 | AAACTTGTATATACAAGATG |
| -66 | 5.7 | TACCTTGTATATACTAGTTA | ||