Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Zur regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: Zur - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_1665
Regulated genes 3
Built upon 43 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -48
Score: 6.7
Sequence: TTAATCGTAAGGATTACGATTTA
Locus tag: LAF_0191
LAF_0191 -48 6.7 TTAATCGTAAGGATTACGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: znuA
Ortholog function: Zinc ABC transporter, substrate-binding protein
Lactobacillus fermentum IFO 3956 LAF_0191 -48 6.7 TTAATCGTAAGGATTACGATTTA
Lactobacillus reuteri JCM 1112 LAR_0207 -36 6.8 TAAATAGTAACGATTACGATTAA
Position: -82
Score: 6.5
Sequence: TAAATGGTAATAATTACTATTTG
Locus tag: LAF_1127
LAF_1127 -82 6.5 TAAATGGTAATAATTACTATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpsN2
Ortholog function: Small subunit ribosomal protein S14, zinc-independent
Lactobacillus brevis ATCC 367 LVIS_0360 -37 5.9 TAAAGCGTAATAATTACTATCAA
Lactobacillus casei ATCC 334 LSEI_2425 -248 6.9 TAAATAGTAATGATTACGAATTA
Lactobacillus fermentum IFO 3956 LAF_1127 -82 6.5 TAAATGGTAATAATTACTATTTG
Lactobacillus plantarum WCFS1 lp_2216 -125 5.6 AAAATAGTAGCTGTTACGATTTA
Lactobacillus rhamnosus GG LGG_02422 -243 6.8 TTAAGCGTAATGATTACGATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1944 -63 5.7 TAAATCGTAATTGATATCATTTA
-42 7.3 TAAAAAGTAATGATTACTATTTA
Position: -37
Score: 5.8
Sequence: AAAAACGTAATCATTACTAAAAA
Locus tag: LAF_1665
LAF_1665 -37 5.8 AAAAACGTAATCATTACTAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zur
Ortholog function: Zinc homeostasis transcriptional regulator Zur, Fur family
Lactobacillus casei ATCC 334 LSEI_2025 -69 6.5 TTAATCGTAATCAATACGATTTA
Lactobacillus fermentum IFO 3956 LAF_1665 -37 5.8 AAAAACGTAATCATTACTAAAAA
Lactobacillus plantarum WCFS1 lp_0868 -56 6.9 TAAATAGTAATGATTATGATTTA
Lactobacillus rhamnosus GG LGG_02012 -70 5.4 CTAATCGTAACCAGTACGATTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1450 -35 6.6 TAGAAAGTAAAGATTACTATTTA
Oenococcus oeni PSU-1 OEOE_1189 -95 5.4 TTAATGGTAAATATTACTTTTAC
-53 6 TACTTAGTAATGATTACTTGTTA
Pediococcus pentosaceus ATCC 25745 PEPE_0386 -36 7.3 TAAAACGTAATGATTACTATTTA
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