Propagation of Zur regulog to Lactobacillus fermentum IFO 3956
| Source regulog: | Zur - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus fermentum IFO 3956 |
| Orthologous TF(s) | LAF_1665 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -48
Score: 6.7 Sequence: TTAATCGTAAGGATTACGATTTA
Locus tag: LAF_0191
|
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| LAF_0191 | -48 | 6.7 | TTAATCGTAAGGATTACGATTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: znuA | ||||
| Ortholog function: Zinc ABC transporter, substrate-binding protein | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0191 | -48 | 6.7 | TTAATCGTAAGGATTACGATTTA |
| Lactobacillus reuteri JCM 1112 | LAR_0207 | -36 | 6.8 | TAAATAGTAACGATTACGATTAA |
|
Position: -82
Score: 6.5 Sequence: TAAATGGTAATAATTACTATTTG
Locus tag: LAF_1127
|
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| LAF_1127 | -82 | 6.5 | TAAATGGTAATAATTACTATTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpsN2 | ||||
| Ortholog function: Small subunit ribosomal protein S14, zinc-independent | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0360 | -37 | 5.9 | TAAAGCGTAATAATTACTATCAA |
| Lactobacillus casei ATCC 334 | LSEI_2425 | -248 | 6.9 | TAAATAGTAATGATTACGAATTA |
| Lactobacillus fermentum IFO 3956 | LAF_1127 | -82 | 6.5 | TAAATGGTAATAATTACTATTTG |
| Lactobacillus plantarum WCFS1 | lp_2216 | -125 | 5.6 | AAAATAGTAGCTGTTACGATTTA |
| Lactobacillus rhamnosus GG | LGG_02422 | -243 | 6.8 | TTAAGCGTAATGATTACGATTTA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1944 | -63 | 5.7 | TAAATCGTAATTGATATCATTTA |
| -42 | 7.3 | TAAAAAGTAATGATTACTATTTA | ||
|
Position: -37
Score: 5.8 Sequence: AAAAACGTAATCATTACTAAAAA
Locus tag: LAF_1665
|
||||
| LAF_1665 | -37 | 5.8 | AAAAACGTAATCATTACTAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zur | ||||
| Ortholog function: Zinc homeostasis transcriptional regulator Zur, Fur family | ||||
| Lactobacillus casei ATCC 334 | LSEI_2025 | -69 | 6.5 | TTAATCGTAATCAATACGATTTA |
| Lactobacillus fermentum IFO 3956 | LAF_1665 | -37 | 5.8 | AAAAACGTAATCATTACTAAAAA |
| Lactobacillus plantarum WCFS1 | lp_0868 | -56 | 6.9 | TAAATAGTAATGATTATGATTTA |
| Lactobacillus rhamnosus GG | LGG_02012 | -70 | 5.4 | CTAATCGTAACCAGTACGATTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1450 | -35 | 6.6 | TAGAAAGTAAAGATTACTATTTA |
| Oenococcus oeni PSU-1 | OEOE_1189 | -95 | 5.4 | TTAATGGTAAATATTACTTTTAC |
| -53 | 6 | TACTTAGTAATGATTACTTGTTA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0386 | -36 | 7.3 | TAAAACGTAATGATTACTATTTA |