Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) LVIS_1203
Regulated genes 38
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -173
Score: 4.4
Sequence: CTGTATGCGCTTACAT
Locus tag: LVIS_0119
LVIS_0119 -173 4.4 CTGTATGCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -161 4.3 AAGCAAGCGCTTCCAT
Lactobacillus brevis ATCC 367 LVIS_0119 -173 4.4 CTGTATGCGCTTACAT
Lactobacillus fermentum IFO 3956 LAF_0277 -197 4.7 TTGAAAACGCTTTCTC
Lactobacillus johnsonii NCC 533 LJ1766 -162 4.5 ATGTAACCGATAACAT
Lactobacillus reuteri JCM 1112 LAR_0310 -132 4.8 TTGTAAGCGAATTCAT
Lactobacillus sakei subsp. sakei 23K LSA0379 -74 4.5 TTACAAACGGTTTCAA
Position: -101
Score: 4.7
Sequence: TTGTAATCGATTACAA
Locus tag: LVIS_0180
LVIS_0180 -101 4.7 TTGTAATCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplA1
Ortholog function: Lipoate-protein ligase A
Lactobacillus brevis ATCC 367 LVIS_0180 -101 4.7 TTGTAATCGATTACAA
Lactobacillus casei ATCC 334 LSEI_1473 -101 4.1 TCGAAATCGCTTTCTT
Lactobacillus fermentum IFO 3956 LAF_1136 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus reuteri JCM 1112 LAR_1565 -104 4.7 TTGCAAACGCTTACTA
Lactobacillus rhamnosus GG LGG_01479 -150 4.1 TCGAAATCGCTTTCTT
Lactobacillus sakei subsp. sakei 23K LSA0934 -20 4.3 ATGAAAGGGGTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0157 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Position: -91
Score: 3.9
Sequence: GCGAAAACGCTTGCAT
Locus tag: LVIS_0183
LVIS_0183 -91 3.9 GCGAAAACGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Lactobacillus brevis ATCC 367 LVIS_0183 -91 3.9 GCGAAAACGCTTGCAT
Lactobacillus fermentum IFO 3956 LAF_0402 -217 4.3 TGGGAAGCGGTTTCTA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0130 -83 5 ATGAAAGCGTATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0187 -150 4.2 TTGTAAGCGAATACAC
-129 4.4 ATGTCAACGCTTTTAT
-107 4.7 TTGAAAACGCTTTACA
Position: -46
Score: 4.3
Sequence: TTGGAACCGGTTTCGT
Locus tag: LVIS_0238
LVIS_0238 -46 4.3 TTGGAACCGGTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus brevis ATCC 367 LVIS_0238 -46 4.3 TTGGAACCGGTTTCGT
Lactobacillus sakei subsp. sakei 23K LSA0649 -43 4.3 AAGGAAACGTTTTCCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0110 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Position: -90
Score: 4.2
Sequence: ATGTAAGCGCTTACGC
Locus tag: LVIS_0254
LVIS_0254 -90 4.2 ATGTAAGCGCTTACGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhA
Ortholog function: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
Lactobacillus brevis ATCC 367 LVIS_0254 -90 4.2 ATGTAAGCGCTTACGC
Lactobacillus sakei subsp. sakei 23K LSA1702 -39 4.8 ATGGAAACGATTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1919 -16 3.8 AAGAAAGAGGTTAAAA
Oenococcus oeni PSU-1 OEOE_0527 -229 4.2 AAGTAAGCGCTTCCAC
Position: -188
Score: 4.6
Sequence: TTGAAAGCGCTTTATG
Locus tag: LVIS_0311
LVIS_0311 -188 4.6 TTGAAAGCGCTTTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pnuC
Ortholog function: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter
Lactobacillus acidophilus NCFM LBA1653 -190 4.7 ATAAAAGCGTTTTAAA
Lactobacillus brevis ATCC 367 LVIS_0311 -188 4.6 TTGAAAGCGCTTTATG
Lactobacillus johnsonii NCC 533 LJ0643 -173 4.6 AAGAAAGCGCTATCTA
Lactobacillus rhamnosus GG LGG_01221 -158 4.1 ATGAAAAGGGTTTCCA
Position: -152
Score: 4.3
Sequence: TTGAAAGCGTGAACAA
Locus tag: LVIS_0313
LVIS_0313 -152 4.3 TTGAAAGCGTGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus acidophilus NCFM LBA1974 -110 4.4 GAAAAAGCGGTTTCAT
-78 4 AAGATAGCGTTTTGAA
Lactobacillus brevis ATCC 367 LVIS_0313 -152 4.3 TTGAAAGCGTGAACAA
Lactobacillus casei ATCC 334 LSEI_1784 -149 4 GTTTAAGCGTTTTATA
-92 4.4 ATGAAAGGGCTTGCAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_2034 -76 4 TTGATAGCACTTGCAA
Lactobacillus johnsonii NCC 533 LJ1853 -79 4.1 CAGCAACCGCTTTCAA
Lactobacillus plantarum WCFS1 lp_0849 -390 4.3 ATGTAAGCGTCATCAT
-86 4.9 ATAAAAGCGTTTACAT
Lactobacillus rhamnosus GG LGG_01836 -136 4.6 ATTAAAGCGCTTTCCT
-89 4.1 GTGAAAGGGTTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1830 -71 4.1 TTTGTAACGCTTACAA
Position: -150
Score: 4.9
Sequence: TTGAAAACGGTTAAAT
Locus tag: LVIS_0323
LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM LBA1632 -66 4.7 TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367 LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334 LSEI_2278 -18 4.1 AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956 LAF_0045 -62 4.3 GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533 LJ0671 -44 4.6 AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1 lp_3092 -45 4 GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112 LAR_0033 -132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
Position: -71
Score: 4.2
Sequence: ATGAAAGCGGTGCCAT
Locus tag: LVIS_0357
LVIS_0357 -71 4.2 ATGAAAGCGGTGCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus brevis ATCC 367 LVIS_0357 -71 4.2 ATGAAAGCGGTGCCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1282 -59 4.5 AAGAATGCGATTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0968 -39 4.4 ATGAAAGCGCTTCATA
Position: -75
Score: 4.3
Sequence: AGGAAAACGTTTACCA
Locus tag: LVIS_0438
LVIS_0438 -75 4.3 AGGAAAACGTTTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: LVIS_0438
Ortholog function: Hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0438 -97 4.2 ATGAAAGCGTTTGACA
-75 4.3 AGGAAAACGTTTACCA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0499 -76 5.1 TTGGAAGCGTTTACAA
Position: -202
Score: 4.7
Sequence: ATGTCAACGCTTTCAT
Locus tag: LVIS_0463
LVIS_0463 -202 4.7 ATGTCAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynT
Ortholog function: Na+/xyloside symporter
Lactobacillus brevis ATCC 367 LVIS_0463 -202 4.7 ATGTCAACGCTTTCAT
-115 4.2 GTGTAAGCGGTTGCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1245 -52 5.1 TAGTAAGCGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0185 -150 4.2 TTGTAAGCGAATACAC
-129 4.4 ATGTCAACGCTTTTAT
-107 4.7 TTGAAAACGCTTTACA
Position: -235
Score: 4.4
Sequence: GTGTAAGCGTTTCCTT
Locus tag: LVIS_0621
LVIS_0621 -235 4.4 GTGTAAGCGTTTCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lrgA
Ortholog function: Antiholin-like protein LrgA
Lactobacillus brevis ATCC 367 LVIS_0621 -235 4.4 GTGTAAGCGTTTCCTT
Lactobacillus reuteri JCM 1112 LAR_0851 -101 4.4 GTGAAAACGAATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0697 -88 4.8 GTGAAAGCGCTAACAT
Position: -166
Score: 4.9
Sequence: TTGACAGCGCTTACAA
Locus tag: LVIS_0695
LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956 LAF_0383 -179 4.9 TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112 LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0428 -174 4.8 TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1300 -200 4.3 TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Position: -181
Score: 4.1
Sequence: CGGAAAACGCTTACTT
Locus tag: LVIS_0765
LVIS_0765 -181 4.1 CGGAAAACGCTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pyk
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Lactobacillus acidophilus NCFM LBA0957 -134 4.2 ATGTAAGTGCTAACAT
Lactobacillus brevis ATCC 367 LVIS_0765 -181 4.1 CGGAAAACGCTTACTT
Lactobacillus fermentum IFO 3956 LAF_0868 -125 4.5 AAGAAACCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_1050 -136 4.2 ATGTAAGTGCTAACAT
Lactobacillus johnsonii NCC 533 LJ1080 -132 4.5 TTGAAAGCGAAAACAT
Lactobacillus reuteri JCM 1112 LAR_0722 -139 4.4 ATGATAGCGCTTTTTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0775 -169 4.6 GTGAAACCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1092 -116 4 AATAAAGCACTTACAT
Position: -107
Score: 4.7
Sequence: TCGAAAACGTTTTCAA
Position: -49
Score: 4.1
Sequence: TTGAAAACGGATGAAA
Locus tag: LVIS_1203
LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -161
Score: 3.9
Sequence: TTTCATCCGTTTTCAA
Position: -103
Score: 4.9
Sequence: TTGAAAACGTTTTCGA
Locus tag: LVIS_1204
LVIS_1204 -161 3.9 TTTCATCCGTTTTCAA
-103 4.9 TTGAAAACGTTTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -117
Score: 4.4
Sequence: ATGAAAGGGCTTGCAA
Locus tag: LVIS_1410
LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -19
Score: 4.5
Sequence: ATGAAAGGGCTTACTT
Locus tag: LVIS_1586
LVIS_1586 -19 4.5 ATGAAAGGGCTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: H+/gluconate symporter related permease
Lactobacillus brevis ATCC 367 LVIS_1586 -19 4.5 ATGAAAGGGCTTACTT
Lactobacillus casei ATCC 334 LSEI_0229 -43 4.9 TTGTAAGCGATTTCTT
Lactobacillus rhamnosus GG LGG_00277 -194 4.7 TTGTAAGCGGTTTCTG
Lactobacillus sakei subsp. sakei 23K LSA0299 -36 4.5 ATGTAAACGCAAACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1360 -35 4.7 AAGAAAGCGGTTACTT
Position: -199
Score: 4.3
Sequence: TTGTAAGCCCTTTAAT
Locus tag: LVIS_1589
LVIS_1589 -199 4.3 TTGTAAGCCCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsD
Ortholog function: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Lactobacillus acidophilus NCFM LBA1484 -101 4.7 TTGAAAGCGATTACAC
Lactobacillus brevis ATCC 367 LVIS_1589 -199 4.3 TTGTAAGCCCTTTAAT
Lactobacillus casei ATCC 334 LSEI_0307 -88 4.5 TTGACAGCGCTTCCAA
Lactobacillus fermentum IFO 3956 LAF_1737 -158 4.3 TAGCAAACGCTTGCAT
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus fermentum IFO 3956 LAF_1737 -158 4.3 TAGCAAACGCTTGCAT
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus plantarum WCFS1 lp_3659 -72 4.9 ATTAAAACGTTTTCAT
Lactobacillus reuteri JCM 1112 LAR_0400 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Lactobacillus reuteri JCM 1112 LAR_0400 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Lactobacillus sakei subsp. sakei 23K LSA0201 -114 4.3 TGTAAACCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_1613 -19 4.9 TTGAAAACACTTTCAA
Oenococcus oeni PSU-1 OEOE_1613 -19 4.9 TTGAAAACACTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1698 -65 4.9 ATTAAAACGTTTTCAT
Position: -113
Score: 4.7
Sequence: ATGATACCGCTTACAA
Locus tag: LVIS_1619
LVIS_1619 -113 4.7 ATGATACCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF2
Ortholog function: Glycerol uptake facilitator protein
Lactobacillus acidophilus NCFM LBA1436 -35 4.7 TTGTAAGCGATTGCAT
Lactobacillus brevis ATCC 367 LVIS_1619 -113 4.7 ATGATACCGCTTACAA
Lactobacillus plantarum WCFS1 lp_0171 -58 4.6 TTGAAATCGGATTCAT
Lactobacillus reuteri JCM 1112 LAR_1640 -50 4.7 TAGAAAACGCATACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0112 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1630 -64 5 TTGAAAGCGTTTATAT
Position: -86
Score: 4.8
Sequence: TAGAAAGCGCTTGCAA
Locus tag: LVIS_1656
LVIS_1656 -86 4.8 TAGAAAGCGCTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pmi
Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Lactobacillus acidophilus NCFM LBA0745 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus brevis ATCC 367 LVIS_1656 -86 4.8 TAGAAAGCGCTTGCAA
Lactobacillus helveticus DPC 4571 lhv_0789 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus johnsonii NCC 533 LJ0916 -60 4.6 TTGAAAGTGGTTTCAA
Lactobacillus sakei subsp. sakei 23K LSA1146 -99 4.1 ACGAAATCGCTTTAAA
Oenococcus oeni PSU-1 OEOE_0249 -30 4.9 ATGATAACGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1334 -21 4.3 ATGAAAGGGGTTTTAT
Position: -140
Score: 4.3
Sequence: ATGAAAGCGGTTCATA
Position: -79
Score: 4.4
Sequence: TTGAAAGGGCTTTCGA
Locus tag: LVIS_1743
LVIS_1743 -140 4.3 ATGAAAGCGGTTCATA
-79 4.4 TTGAAAGGGCTTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Lactobacillus brevis ATCC 367 LVIS_1743 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1555 -100 4.3 TGGTAAGCGTTTTATA
-76 4.4 GTGAAATCGCTTACAG
Lactobacillus plantarum WCFS1 lp_3557 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0467 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1860 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0853 -104 5 TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0162 -48 4.9 ATGAATACGCTTTCAA
Position: -98
Score: 4.7
Sequence: ATGAAAACGTTTTATA
Locus tag: LVIS_1904
LVIS_1904 -98 4.7 ATGAAAACGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus acidophilus NCFM LBA1459 -36 4.3 CTGAAAACGATTACAG
Lactobacillus brevis ATCC 367 LVIS_1904 -98 4.7 ATGAAAACGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_1792 -99 4.1 ATGTAAGCGCTCTATT
Lactobacillus helveticus DPC 4571 lhv_1501 -37 4.8 TTGAAAACGATTACAG
Lactobacillus johnsonii NCC 533 LJ0859 -36 5.1 ATGAAAACGATTACAA
Lactobacillus reuteri JCM 1112 LAR_1662 -125 4.5 GTGTAATCGTTTTCTT
-93 4.4 TTGTAAGCGCTTATTG
Position: -62
Score: 5
Sequence: AAGAAACCGCTTTCAA
Locus tag: LVIS_2027
LVIS_2027 -62 5 AAGAAACCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Lactobacillus fermentum IFO 3956 LAF_0300 -65 4.7 TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112 LAR_0435 -72 4.7 TTGACAACGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1629 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Position: -65
Score: 4.7
Sequence: TAGAAAGCGTTTTCGT
Locus tag: LVIS_2029
LVIS_2029 -65 4.7 TAGAAAGCGTTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbA
Ortholog function: Signal transduction histidine kinase
Lactobacillus brevis ATCC 367 LVIS_2029 -65 4.7 TAGAAAGCGTTTTCGT
Position: -40
Score: 4.5
Sequence: ATCAAACCGCTTTCAT
Locus tag: LVIS_2031
LVIS_2031 -40 4.5 ATCAAACCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcD
Ortholog function: Arginine/ornithine antiporter
Lactobacillus brevis ATCC 367 LVIS_2031 -40 4.5 ATCAAACCGCTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1176 -36 4.4 ATGTAAGCATATTCAT
Lactobacillus reuteri JCM 1112 LAR_1455 -65 4.6 TTGAAGCCGCTTTCAA
Position: -122
Score: 4
Sequence: GTGTTACCGTTTGCAA
Locus tag: LVIS_2109
LVIS_2109 -122 4 GTGTTACCGTTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose repressor XylR, ROK family
Lactobacillus brevis ATCC 367 LVIS_0464 -202 4.7 ATGTCAACGCTTTCAT
-115 4.2 GTGTAAGCGGTTGCAG
Lactobacillus brevis ATCC 367 LVIS_2109 -122 4 GTGTTACCGTTTGCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0186 -150 4.2 TTGTAAGCGAATACAC
-129 4.4 ATGTCAACGCTTTTAT
-107 4.7 TTGAAAACGCTTTACA
Position: -172
Score: 4.8
Sequence: AAGTAACCGTTTTCAA
Locus tag: LVIS_2178
LVIS_2178 -172 4.8 AAGTAACCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malR3
Ortholog function: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
Lactobacillus brevis ATCC 367 LVIS_2178 -172 4.8 AAGTAACCGTTTTCAA
Lactobacillus plantarum WCFS1 lp_3625 -73 4.5 ATGTAAGGGGTTACAT
Position: -38
Score: 4.9
Sequence: TTGAAAACGGTTACTT
Locus tag: LVIS_2179
LVIS_2179 -38 4.9 TTGAAAACGGTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT2
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus brevis ATCC 367 LVIS_2179 -38 4.9 TTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1 lp_3533 -104 4.6 GTGTAAACGTTTACTT
-72 4.7 TTGTAAACGTTTACGT
Oenococcus oeni PSU-1 OEOE_0041 -124 4.2 CAGTAAACGTTTACTA
-92 4.6 TTGTAAACGTTTACTG
-57 4.9 TTGTAAACGTTTACTT
Position: -191
Score: 4.6
Sequence: TTGAAAGCGGTAAAAA
Locus tag: LVIS_2191
LVIS_2191 -191 4.6 TTGAAAGCGGTAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus brevis ATCC 367 LVIS_2191 -191 4.6 TTGAAAGCGGTAAAAA
Lactobacillus fermentum IFO 3956 LAF_0741 -39 4.7 ATGGAAGCGTATTCAA
Lactobacillus plantarum WCFS1 lp_3051 -36 4.7 ATGATAGCGATTACAA
Lactobacillus reuteri JCM 1112 LAR_0029 -39 4.4 ATGGAATCGTATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -147 4.2 TTTGTAACGCTTTCAT
-55 4.1 CGGTAAGCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0276 -104 4.1 ATAAAAACGTTTAACT
-71 4.7 TTGTAAACGGATACAT
-15 4 AAGAAGGCGTTTAAAA
Position: -96
Score: 4.3
Sequence: TTGGAAACGCTTCCCA
Locus tag: LVIS_2210
LVIS_2210 -96 4.3 TTGGAAACGCTTCCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptcA
Ortholog function: Putrescine carbamoyltransferase (EC 2.1.3.6)
Lactobacillus brevis ATCC 367 LVIS_2210 -96 4.3 TTGGAAACGCTTCCCA
Lactobacillus sakei subsp. sakei 23K LSA0067 -42 4.3 TTGTAAGCGTAGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0189 -83 4.5 TTGGAAACGCTTTATT
Position: -32
Score: 4.5
Sequence: GTGTAAGCGTTTTATA
Locus tag: LVIS_2259
LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
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