Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rbsD gene

Properties
Regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Built upon 561 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus acidophilus NCFM
Position: -101
Score: 4.68212
Sequence: TTGAAAGCGATTACAC
Locus tag: LBA1485
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LBA1484
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LBA1483
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: LBA1482
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: LBA1481
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsK-rbsD-rbsA-rbsC-rbsB -101 4.7 TTGAAAGCGATTACAC LBA1485
Lactobacillus brevis ATCC 367
Position: -199
Score: 4.31206
Sequence: TTGTAAGCCCTTTAAT
Locus tag: LVIS_1589
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LVIS_1588
Name: rbsP
Funciton: Predicted ribose permease
rbsD-rbsP -199 4.3 TTGTAAGCCCTTTAAT LVIS_1589
Lactobacillus casei ATCC 334
Position: -88
Score: 4.53343
Sequence: TTGACAGCGCTTCCAA
Locus tag: LSEI_0306
Name: rbsR
Funciton: Ribose operon transcriptional regulator, LacI family
Locus tag: LSEI_0307
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSEI_0308
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: LSEI_0309
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: LSEI_0310
Name: null
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsR-rbsD-rbsA-rbsC-LSEI_0310 -88 4.5 TTGACAGCGCTTCCAA LSEI_0306
Lactobacillus fermentum IFO 3956
Position: -158
Score: 4.28067
Sequence: TAGCAAACGCTTGCAT
Position: -103
Score: 4.45468
Sequence: TTGCAACCGCTTTCCT
Locus tag: LAF_1738
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsK-rbsD -158 4.3 TAGCAAACGCTTGCAT LAF_1738
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus plantarum WCFS1
Position: -72
Score: 4.89164
Sequence: ATTAAAACGTTTTCAT
Locus tag: lp_3660
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: lp_3659
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: lp_3658
Name: rbsU
Funciton: Ribose uptake protein RbsU (TC 2.A.7.5)
rbsK-rbsD-rbsU -72 4.9 ATTAAAACGTTTTCAT lp_3660
Lactobacillus reuteri JCM 1112
Position: -135
Score: 4.37711
Sequence: TGAAAAGCGATTTCAA
Position: -76
Score: 4.50079
Sequence: TTGTAATCACTTTCAA
Locus tag: LAR_0399
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAR_0400
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsK-rbsD -135 4.4 TGAAAAGCGATTTCAA LAR_0399
-76 4.5 TTGTAATCACTTTCAA
Lactobacillus sakei subsp. sakei 23K
Position: -114
Score: 4.32253
Sequence: TGTAAACCGTTTTCAA
Locus tag: LSA0200
Name: rbsU
Funciton: Ribose uptake protein RbsU (TC 2.A.7.5)
Locus tag: LSA0201
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSA0202
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LSA0203
Name: rbsR
Funciton: Ribose operon transcriptional regulator, LacI family
rbsU-rbsD-rbsK-rbsR -114 4.3 TGTAAACCGTTTTCAA LSA0200
Oenococcus oeni PSU-1
Position: -19
Score: 4.86738
Sequence: TTGAAAACACTTTCAA
Locus tag: OEOE_1612
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: OEOE_1613
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsK-rbsD -19 4.9 TTGAAAACACTTTCAA OEOE_1612
Pediococcus pentosaceus ATCC 25745
Position: -65
Score: 4.89164
Sequence: ATTAAAACGTTTTCAT
Locus tag: PEPE_1699
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PEPE_1698
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: PEPE_1697
Name: rbsU
Funciton: Ribose uptake protein RbsU (TC 2.A.7.5)
rbsK-rbsD-rbsU -65 4.9 ATTAAAACGTTTTCAT PEPE_1699
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