Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus salivarius subsp. salivarius UCC118

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus salivarius subsp. salivarius UCC118
Orthologous TF(s) LSL_0420
Regulated genes 34
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus salivarius subsp. salivarius UCC118
Locus tag Position Score Sequence
Position: -33
Score: 4.5
Sequence: AAGAATACGTTTACAA
Locus tag: LSL_0065
LSL_0065 -33 4.5 AAGAATACGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrB
Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Lactobacillus acidophilus NCFM LBA0400 -220 4.9 ATGTAAACGCTTTTAT
-188 4.5 ATGATAACGTATTCAA
-31 4.6 AAGATAACGCTTACAT
Lactobacillus johnsonii NCC 533 LJ0518 -214 4.7 GTGTAAGCGTTTTAAA
-184 4.3 ATGATAGCGTATTCTA
-37 4.6 AAGAATGCGTTTACAT
Lactobacillus plantarum WCFS1 lp_0187 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Lactobacillus sakei subsp. sakei 23K LSA1793 -188 4.5 TTGTAAACGCTTTTCA
-163 4.3 ATACAACCGTTTACAT
-59 4.1 TATCAAACGTTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0065 -121 4.1 ATTTAACCGCTTTTTT
-33 4.5 AAGAATACGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0519 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Position: -297
Score: 4.2
Sequence: AAAAAAGCGGTTAAAT
Position: -52
Score: 4.2
Sequence: CATTAAGCGTTTTCAA
Locus tag: LSL_0066
LSL_0066 -297 4.2 AAAAAAGCGGTTAAAT
-52 4.2 CATTAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0401 -219 4.7 ATGTAAGCGTTATCTT
-30 4.9 ATAAAAGCGTTTACAT
Lactobacillus fermentum IFO 3956 LAF_1578 -126 4.4 TTGGCAGCGATTTCAA
-57 4.5 AGAAAAGCGCTTACAA
Lactobacillus johnsonii NCC 533 LJ0519 -214 4.6 ATGTAAACGCATTCTT
-37 4.4 TTTAAAACGCTTACAC
Lactobacillus plantarum WCFS1 lp_0185 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1792 -183 4.2 ATGTAAACGTTTGATA
-54 4.5 TGAAAAGCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0066 -52 4.2 CATTAAGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0518 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Position: -260
Score: 4
Sequence: CTAAAAGCGTTTTATA
Position: -109
Score: 4.3
Sequence: TAGAAATCGTTTACAC
Locus tag: LSL_0086
LSL_0086 -260 4 CTAAAAGCGTTTTATA
-109 4.3 TAGAAATCGTTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -149
Score: 4.4
Sequence: GAATAAGCGTTTTCAT
Position: -43
Score: 4.8
Sequence: AAGAAAACGTTTTCTT
Locus tag: LSL_0110
LSL_0110 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus brevis ATCC 367 LVIS_0238 -46 4.3 TTGGAACCGGTTTCGT
Lactobacillus sakei subsp. sakei 23K LSA0649 -43 4.3 AAGGAAACGTTTTCCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0110 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Position: -150
Score: 4.9
Sequence: TTTAAAACGTTTTCAT
Locus tag: LSL_0134
LSL_0134 -150 4.9 TTTAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgI
Ortholog function: Putative NAD(P)H nitroreductase
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0134 -150 4.9 TTTAAAACGTTTTCAT
-43 4.5 GTGAAAACGATTACTA
Position: -33
Score: 5
Sequence: ATGAAAACGTTTTAAA
Locus tag: LSL_0135
LSL_0135 -33 5 ATGAAAACGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adc
Ortholog function: Probable acetoacetate decarboxylase
Lactobacillus casei ATCC 334 LSEI_0716 -98 4.7 TTGAAAGCGCTATCGT
Lactobacillus plantarum WCFS1 lp_0061 -96 4.4 ATGAAAGCGTAGTCAA
Lactobacillus rhamnosus GG LGG_00705 -106 4.7 TTGAAAGCGCTATCGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0135 -140 4.3 TAGTAATCGTTTTCAC
-33 5 ATGAAAACGTTTTAAA
Position: -56
Score: 3.8
Sequence: GTGAAAACGTTCTATA
Locus tag: LSL_0137
LSL_0137 -56 3.8 GTGAAAACGTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcaD
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus acidophilus NCFM LBA1401 -52 4.4 ATGAAAGAGGTTACAA
Lactobacillus plantarum WCFS1 lp_2544 -200 4.3 TTGTAACCGTTTTAGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0137 -56 3.8 GTGAAAACGTTCTATA
Pediococcus pentosaceus ATCC 25745 PEPE_1619 -81 4.7 TTATAAGCGTTTTAAT
-66 4.1 TTGTAAGCGGTTCACA
Position: -216
Score: 4
Sequence: GTGATAACGATAACAA
Position: -67
Score: 4.5
Sequence: TTGTAAGCGTTATATA
Locus tag: LSL_0153
LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -32
Score: 4.5
Sequence: ATGTAAGCATTTTCTT
Locus tag: LSL_0376
LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Position: -44
Score: 4.3
Sequence: AATAAAACGTTTTCTT
Locus tag: LSL_0381
LSL_0381 -44 4.3 AATAAAACGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus sakei subsp. sakei 23K LSA0764 -31 4.5 ATGAAAGCGATTAATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0381 -44 4.3 AATAAAACGTTTTCTT
Position: -91
Score: 4.1
Sequence: TTGTTATCGTTTGCAT
Position: -68
Score: 4.2
Sequence: ATGTAAACGTGTTCTT
Locus tag: LSL_0388
LSL_0388 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: Phosphotransferase system, HPr-related protein
Lactobacillus acidophilus NCFM LBA0639 -111 4.4 ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0512 -108 4.7 ATGAAAACATTTACAA
Lactobacillus helveticus DPC 4571 lhv_0686 -109 4.4 ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533 LJ0816 -109 4.6 ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1 lp_1273 -135 4 ATGAAAGGGCTTGTAT
Lactobacillus reuteri JCM 1112 LAR_1256 -102 4 TATTTAACGCTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0388 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1780 -157 5.3 ATGTAAACGTTTTCAT
-63 4.7 TTGTAAGCGCTTTGAT
Pediococcus pentosaceus ATCC 25745 PEPE_0609 -127 4 ATGTAAGGGCTTGCTT
Position: -46
Score: 4.4
Sequence: ATGAAAGCGTATTATA
Locus tag: LSL_0395
LSL_0395 -46 4.4 ATGAAAGCGTATTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Lactobacillus johnsonii NCC 533 LJ0149 -38 5 TTGAAACCGCTTTCTA
Lactobacillus plantarum WCFS1 lp_3418 -68 4.8 AAGAAAACGCTTTCTT
Lactobacillus rhamnosus GG LGG_01876 -85 4.4 GTGAAAGCCTTTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0395 -46 4.4 ATGAAAGCGTATTATA
Position: -125
Score: 4
Sequence: TTGCAAGCGTTTCATA
Locus tag: LSL_0419
LSL_0419 -125 4 TTGCAAGCGTTTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -91
Score: 3.9
Sequence: TATGAAACGCTTGCAA
Locus tag: LSL_0420
LSL_0420 -91 3.9 TATGAAACGCTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: 16
Score: 3.8
Sequence: TTGATAGCTCTAACTT
Locus tag: LSL_0464
LSL_0464 16 3.8 TTGATAGCTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Lactobacillus acidophilus NCFM LBA0752 -90 4.3 GTGAATGCGCTTATAA
Lactobacillus casei ATCC 334 LSEI_1126 -62 4 ATGAAACCACTCTCAT
Lactobacillus fermentum IFO 3956 LAF_1686 -63 4.4 GAGTTAGCGCTTTCAT
Lactobacillus fermentum IFO 3956 LAF_0411 -66 4.2 ATGGAAACGTTATCGT
Lactobacillus helveticus DPC 4571 lhv_0795 -14 4 TAGGAAGCGGATTTAT
Lactobacillus plantarum WCFS1 lp_2502 -77 3.8 GAGGAAGCGCTTTTCA
Lactobacillus reuteri JCM 1112 LAR_0415 -69 4.4 TTGAAACCGACTTCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0355 -37 5 TTGTAACCGATTTCAT
Oenococcus oeni PSU-1 OEOE_0636 -118 3.9 TTGGAAGCTATTCCAA
Position: -71
Score: 4.2
Sequence: TTGTAAGCATTTACGA
Locus tag: LSL_0560
LSL_0560 -71 4.2 TTGTAAGCATTTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manO
Ortholog function: Predicted regulator of the mannose operon, ManO
Lactobacillus fermentum IFO 3956 LAF_0394 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus johnsonii NCC 533 LJ0506 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0583 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0452 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0560 -71 4.2 TTGTAAGCATTTACGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0089 -109 4.3 TAGAAATCGTTTACAC
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1765 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1515 -146 4.5 TTGAAAGCGTTTTTTG
Position: -263
Score: 4
Sequence: CATAAAGCGTTTTCTT
Position: -131
Score: 4.3
Sequence: TAGTAAGTGTTTTCAA
Position: -61
Score: 4.1
Sequence: ATGAAAAGGCTTTATT
Locus tag: LSL_0654
LSL_0654 -263 4 CATAAAGCGTTTTCTT
-131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -69
Score: 4.5
Sequence: ATGAAAGCGAATTTAA
Locus tag: LSL_1117
LSL_1117 -69 4.5 ATGAAAGCGAATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lulA
Ortholog function: Lactate utilization protein A
Lactobacillus casei ATCC 334 LSEI_2070 -79 4.6 TTATAAACGCTTTCAG
-30 4.5 TTGGAATCGTTTTAAT
Lactobacillus reuteri JCM 1112 LAR_0364 -115 4.6 ATTAAATCGTTTTCAA
Lactobacillus rhamnosus GG LGG_02071 -79 4.4 TTGAAACCGTTTTCGG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1117 -69 4.5 ATGAAAGCGAATTTAA
Position: -99
Score: 4.1
Sequence: AAGAAAACGTTATCTG
Position: -59
Score: 4.5
Sequence: AAGAATGCGATTTCAT
Locus tag: LSL_1282
LSL_1282 -99 4.1 AAGAAAACGTTATCTG
-59 4.5 AAGAATGCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus brevis ATCC 367 LVIS_0357 -71 4.2 ATGAAAGCGGTGCCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1282 -59 4.5 AAGAATGCGATTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0968 -39 4.4 ATGAAAGCGCTTCATA
Position: -88
Score: 4
Sequence: GTGAAAGCTATTTCTT
Locus tag: LSL_1294
LSL_1294 -88 4 GTGAAAGCTATTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Lactobacillus acidophilus NCFM LBA0680 -55 4.3 AAGTAAGCGCTTTCCG
Lactobacillus casei ATCC 334 LSEI_2040 -230 4.1 TTGTAATCGCTGTTAA
-208 4.4 CAGTAAGCGGTTACAA
Lactobacillus rhamnosus GG LGG_02027 -197 4 CCGAAAGCGGTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1294 -88 4 GTGAAAGCTATTTCTT
Position: -37
Score: 4.3
Sequence: ATGTAAGCGTACTCAA
Locus tag: LSL_1298
LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM LBA1632 -66 4.7 TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367 LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334 LSEI_2278 -18 4.1 AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956 LAF_0045 -62 4.3 GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533 LJ0671 -44 4.6 AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1 lp_3092 -45 4 GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112 LAR_0033 -132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
Position: -200
Score: 4.3
Sequence: TTGACACCGCTTACAG
Locus tag: LSL_1300
LSL_1300 -200 4.3 TTGACACCGCTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956 LAF_0383 -179 4.9 TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112 LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0428 -174 4.8 TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1300 -200 4.3 TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Position: -53
Score: 4.6
Sequence: AAGAAAACGTTTGCAA
Locus tag: LSL_1372
LSL_1372 -53 4.6 AAGAAAACGTTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus plantarum WCFS1 lp_2629 -41 4.1 ACGAAAACGTATACAA
Lactobacillus sakei subsp. sakei 23K LSA1188 -89 4.8 TTGTAATCGATTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1372 -53 4.6 AAGAAAACGTTTGCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1252 -38 4.6 ACGAAAACGTTTTCAA
Position: -96
Score: 4.5
Sequence: TTGTAAACAATTTCAT
Locus tag: LSL_1512
LSL_1512 -96 4.5 TTGTAAACAATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA1012 -96 4.3 TTGTGATCGCTTTCAA
-29 4.8 ATGAAAACGCTTTATA
Lactobacillus casei ATCC 334 LSEI_0631 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0760 -104 4.4 AAGTAAGCTTTTTCAT
-36 4.5 ATGAAAGCGGATACTT
Lactobacillus plantarum WCFS1 lp_3240 -118 4.8 AAGAAAGCGCTTTTAT
Lactobacillus plantarum WCFS1 lp_0264 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00603 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1200 -105 4.4 TTGTAAACGGTTCAAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1512 -96 4.5 TTGTAAACAATTTCAT
-27 4.1 AAGAAAAGGTTTTCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0507 -86 5.1 TTGTAACCGTTTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0508 -86 5.1 TTGTAACCGTTTACAT
Oenococcus oeni PSU-1 OEOE_1342 -96 4.5 TTGAAAACGCTTTATG
Oenococcus oeni PSU-1 OEOE_1341 -96 4.5 TTGAAAACGCTTTATG
Pediococcus pentosaceus ATCC 25745 PEPE_1804 -199 4.6 TTAGAAACGCTTACAT
-56 4.7 TAGCAAGCGCTTACAA
Position: -130
Score: 4.2
Sequence: ATGAAATTGTTTACAA
Locus tag: LSL_1513
LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -75
Score: 4.2
Sequence: TTGAAAGCGTAATATT
Locus tag: LSL_1538
LSL_1538 -75 4.2 TTGAAAGCGTAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaA
Ortholog function: Pantothenate kinase (EC 2.7.1.33)
Lactobacillus fermentum IFO 3956 LAF_1646 -35 4 ATGTAAGGGCTATCCA
Lactobacillus plantarum WCFS1 lp_0913 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus reuteri JCM 1112 LAR_1512 -44 4.6 GAGTAACCGTTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0138 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1538 -75 4.2 TTGAAAGCGTAATATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1881 -107 4.1 TTGTATACTGTTTCAT
Position: -39
Score: 4.2
Sequence: TTGAAAGTGTATACAT
Locus tag: LSL_1613
LSL_1613 -39 4.2 TTGAAAGTGTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pmi
Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1613 -39 4.2 TTGAAAGTGTATACAT
Position: -56
Score: 4.2
Sequence: CAGTAAACGTTATCAT
Locus tag: LSL_1620
LSL_1620 -56 4.2 CAGTAAACGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2888 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus plantarum WCFS1 lp_0230 -63 4.8 TTGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02912 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1620 -56 4.2 CAGTAAACGTTATCAT
Position: -64
Score: 5
Sequence: TTGAAAGCGTTTATAT
Locus tag: LSL_1633
LSL_1633 -64 5 TTGAAAGCGTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaK
Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Lactobacillus acidophilus NCFM LBA1433 -35 4.7 TTGTAAGCGATTGCAT
Lactobacillus plantarum WCFS1 lp_0168 -58 4.6 TTGAAATCGGATTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1633 -64 5 TTGAAAGCGTTTATAT
Pediococcus pentosaceus ATCC 25745 PEPE_1662 -63 4.8 TTGTAATCGCTTTCTA
Position: -31
Score: 4.4
Sequence: TTGTAAACGATGTCAA
Locus tag: LSL_1748
LSL_1748 -31 4.4 TTGTAAACGATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhX
Ortholog function: Zn conatining alcohol dehydrogenase
Lactobacillus fermentum IFO 3956 LAF_0797 -31 4.6 ATGTAAGCGCTACCAA
Lactobacillus plantarum WCFS1 lp_3054 -85 4.6 TTGTAAGCGCTTGAAT
-41 4.5 TTGTAAGCGGTTTACA
Lactobacillus sakei subsp. sakei 23K LSA0542 -66 4.3 TTGTAAACGATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1748 -31 4.4 TTGTAAACGATGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0182 -75 4.8 TTGCAAACGCTTTCTT
Position: -73
Score: 4.6
Sequence: TTGAAAACGGTTAATA
Locus tag: LSL_1751
LSL_1751 -73 4.6 TTGAAAACGGTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaY
Ortholog function: Predicted L-rhamnose permease RhaY
Lactobacillus plantarum WCFS1 lp_3596 -33 4.7 ATGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02691 -64 4.8 ATGTAAGCGGTTAAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1751 -73 4.6 TTGAAAACGGTTAATA
Position: -18
Score: 4.1
Sequence: TTGAAAGGGGTATAAT
Locus tag: LSL_1806
LSL_1806 -18 4.1 TTGAAAGGGGTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Lactobacillus acidophilus NCFM LBA0588 -61 4.1 TTGGATGCGTTTTTTT
Lactobacillus sakei subsp. sakei 23K LSA1685 -65 4.4 TTTAAAGCGCTTTTTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1806 -18 4.1 TTGAAAGGGGTATAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0793 -76 5.1 ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_1611 -110 4.7 TTGAAAGTGTTTTCAA
Position: -181
Score: 4.2
Sequence: ATGTAAGCGTTATTCT
Locus tag: LSL_1881
LSL_1881 -181 4.2 ATGTAAGCGTTATTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufC
Ortholog function: Iron-sulfur cluster assembly ATPase protein
Lactobacillus plantarum WCFS1 lp_1468 -186 4.5 ATGAAAGGGCTTTTAT
-138 4.3 ATGAAAACGGTTATAC
Lactobacillus sakei subsp. sakei 23K LSA1113 -74 3.9 TGAAAAGCGTTCTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1881 -181 4.2 ATGTAAGCGTTATTCT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2038 29 4.4 GAGAAAACGCTTAAAA
Position: -63
Score: 4.3
Sequence: TTGTAACCGTTAACAC
Locus tag: LSL_1894
LSL_1894 -63 4.3 TTGTAACCGTTAACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sorD
Ortholog function: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Lactobacillus plantarum WCFS1 lp_3657 -61 4.4 ATGTATGCGCTTTCGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1894 -63 4.3 TTGTAACCGTTAACAC
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