Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of YxeR regulog to Oenococcus oeni ATCC BAA-1163

Reference regulog properties
Source regulog: YxeR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Antibiotic resistance
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Oenococcus oeni ATCC BAA-1163
Orthologous TF(s) OENOO_60059
Regulated genes 2
Built upon 20 sites [see more]
Predicted regulatory interactions in Oenococcus oeni ATCC BAA-1163
Locus tag Position Score Sequence
Position: 11
Score: 3.9
Sequence: TGAATTACGGAATATCAATAA
Locus tag: OENOO_60057
OENOO_60057 11 3.9 TGAATTACGGAATATCAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeB
Ortholog function: Predicted antimicrobial peptide transporter, ATP-binding protein
Lactobacillus acidophilus NCFM LBA1838 -81 3.6 TTATTGACAACTCGTCACAAT
Lactobacillus brevis ATCC 367 LVIS_2197 -90 4.3 AAGTTGACACGGTGTCACTCA
-46 5.1 TAAGTGACGCCGTGTCACTTA
Lactobacillus casei ATCC 334 LSEI_0396 -77 4.2 ATGTTGACACGGTGTCACTTT
-33 4.7 TTAGTGACACCGTGTCACCAC
Lactobacillus fermentum IFO 3956 LAF_1824 -83 3.8 AAGTTGACACGGTGTCACCTC
-42 4.2 CGAGTGACACGGTGTCACTAT
Lactobacillus helveticus DPC 4571 lhv_1878 -80 4.5 GTATTGACAATGCGTCACAAA
Lactobacillus reuteri JCM 1112 LAR_1739 -83 4.5 TGATTGACATGGTGTCACTTT
-38 3.4 ACGGTGACACGGTGTCACGAT
Lactobacillus rhamnosus GG LGG_00490 -122 4.2 AAGTTGACACCGTGTCACTAT
-78 3.4 ACGGTGACACGGTGTCACCAT
Oenococcus oeni PSU-1 OEOE_0735 -72 3.6 AAATTGACGCCGTGTCACCAT
-35 4.9 TTAGTGACGTGGTGTCACTTA
Pediococcus pentosaceus ATCC 25745 PEPE_0019 -76 4.6 ATTTTGACACGGTGTCACTTT
-41 5.2 TTGTTGACACGGTGTCATTTT
Position: -349
Score: 3.8
Sequence: TTTTTGAACTTTTTTCATTTC
Position: -236
Score: 3.6
Sequence: TATCTTACTTAACGTTAAATA
Position: -135
Score: 3.7
Sequence: TTTATTAAATTGGTATATATA
Position: -72
Score: 3.6
Sequence: AAATTGACGCCGTGTCACCAT
Position: -35
Score: 4.9
Sequence: TTAGTGACGTGGTGTCACTTA
Locus tag: OENOO_60059
OENOO_60059 -349 3.8 TTTTTGAACTTTTTTCATTTC
-236 3.6 TATCTTACTTAACGTTAAATA
-135 3.7 TTTATTAAATTGGTATATATA
-72 3.6 AAATTGACGCCGTGTCACCAT
-35 4.9 TTAGTGACGTGGTGTCACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeR
Ortholog function: Predicted antibiotic resistance transcriptional reguator, TetR family
Lactobacillus brevis ATCC 367 LVIS_2199 -90 4.3 AAGTTGACACGGTGTCACTCA
-46 5.1 TAAGTGACGCCGTGTCACTTA
Lactobacillus casei ATCC 334 LSEI_0394 -77 4.2 ATGTTGACACGGTGTCACTTT
-33 4.7 TTAGTGACACCGTGTCACCAC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1914 -73 3.1 GTGTTGGAACGGTGTCACTTT
-29 3.5 AGGGTGACACGGTGTCACGGA
Lactobacillus fermentum IFO 3956 LAF_1826 -83 3.8 AAGTTGACACGGTGTCACCTC
-42 4.2 CGAGTGACACGGTGTCACTAT
Lactobacillus reuteri JCM 1112 LAR_1741 -83 4.5 TGATTGACATGGTGTCACTTT
-38 3.4 ACGGTGACACGGTGTCACGAT
Oenococcus oeni PSU-1 OEOE_0733 -72 3.6 AAATTGACGCCGTGTCACCAT
-35 4.9 TTAGTGACGTGGTGTCACTTA
Pediococcus pentosaceus ATCC 25745 PEPE_0017 -76 4.6 ATTTTGACACGGTGTCACTTT
-41 5.2 TTGTTGACACGGTGTCATTTT
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