Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Zur regulog to Lactobacillus rhamnosus Lc 705

Reference regulog properties
Source regulog: Zur - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus rhamnosus Lc 705
Orthologous TF(s) LC705_02010
Regulated genes 4
Built upon 43 sites [see more]
Predicted regulatory interactions in Lactobacillus rhamnosus Lc 705
Locus tag Position Score Sequence
Position: -39
Score: 6.4
Sequence: TAAATCGTAATCGTTACCGTTTG
Locus tag: LC705_00270
LC705_00270 -39 6.4 TAAATCGTAATCGTTACCGTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: znuC
Ortholog function: Zinc ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_0471 -46 6.6 TAAACGGTAATCATTACTGTTTA
Lactobacillus casei ATCC 334 LSEI_0242 -39 6.4 TAAACCGTAATCGTTACCGTTTA
Lactobacillus fermentum IFO 3956 LAF_0192 -48 6.7 TTAATCGTAAGGATTACGATTTA
Lactobacillus plantarum WCFS1 lp_0463 -51 6.9 AAAATAGTAATCATTACGATTTA
Lactobacillus reuteri JCM 1112 LAR_0208 -36 6.8 TAAATAGTAACGATTACGATTAA
Lactobacillus rhamnosus GG LGG_00285 -39 6.4 TAAATCGTAATCGTTACCGTTTG
Lactobacillus sakei subsp. sakei 23K LSA0283 -37 6.5 TAAAGCGTAACTATTACGATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1586 -40 7 TAAAAAGTAATGATTACTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0804 -171 6.2 TTTAAAGTAATCATTACTTTTTG
-142 6.2 TTAATAGTAATGATTACTATAAT
Oenococcus oeni PSU-1 OEOE_1187 -118 6 TAACAAGTAATCATTACTAAGTA
-76 5.5 GTAAAAGTAATATTTACCATTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0290 -33 6.9 TAAATAGTAATTATTACTCTTTA
Position: -70
Score: 5.4
Sequence: CTAATCGTAACCAGTACGATTTG
Locus tag: LC705_02010
LC705_02010 -70 5.4 CTAATCGTAACCAGTACGATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: zur
Ortholog function: Zinc homeostasis transcriptional regulator Zur, Fur family
Lactobacillus casei ATCC 334 LSEI_2025 -69 6.5 TTAATCGTAATCAATACGATTTA
Lactobacillus fermentum IFO 3956 LAF_1665 -37 5.8 AAAAACGTAATCATTACTAAAAA
Lactobacillus plantarum WCFS1 lp_0868 -56 6.9 TAAATAGTAATGATTATGATTTA
Lactobacillus rhamnosus GG LGG_02012 -70 5.4 CTAATCGTAACCAGTACGATTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1450 -35 6.6 TAGAAAGTAAAGATTACTATTTA
Oenococcus oeni PSU-1 OEOE_1189 -95 5.4 TTAATGGTAAATATTACTTTTAC
-53 6 TACTTAGTAATGATTACTTGTTA
Pediococcus pentosaceus ATCC 25745 PEPE_0386 -36 7.3 TAAAACGTAATGATTACTATTTA
Position: -243
Score: 6.8
Sequence: TTAAGCGTAATGATTACGATTTA
Locus tag: LC705_02422
LC705_02422 -243 6.8 TTAAGCGTAATGATTACGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpsN2
Ortholog function: Small subunit ribosomal protein S14, zinc-independent
Lactobacillus brevis ATCC 367 LVIS_0360 -37 5.9 TAAAGCGTAATAATTACTATCAA
Lactobacillus casei ATCC 334 LSEI_2425 -248 6.9 TAAATAGTAATGATTACGAATTA
Lactobacillus fermentum IFO 3956 LAF_1127 -82 6.5 TAAATGGTAATAATTACTATTTG
Lactobacillus plantarum WCFS1 lp_2216 -125 5.6 AAAATAGTAGCTGTTACGATTTA
Lactobacillus rhamnosus GG LGG_02422 -243 6.8 TTAAGCGTAATGATTACGATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1944 -63 5.7 TAAATCGTAATTGATATCATTTA
-42 7.3 TAAAAAGTAATGATTACTATTTA
Position: -40
Score: 6.9
Sequence: TAAATCGTAATGATTACGTTTTG
Locus tag: LC705_02423
LC705_02423 -40 6.9 TAAATCGTAATGATTACGTTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: znuA
Ortholog function: Zinc ABC transporter, substrate-binding protein
Lactobacillus casei ATCC 334 LSEI_2427 -183 7 TAATTCGTAATCATTACTATTTA
-40 6.7 TAAATCGTAATTATTACGTTTTG
Lactobacillus rhamnosus GG LGG_02423 -181 6.7 TAAATCGTAATCATTACGCTTAA
-40 6.9 TAAATCGTAATGATTACGTTTTG
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