Propagation of NrdR regulog to Lactobacillus casei ATCC 334

Reference regulog properties
Source regulog:	NrdR - Lactobacillaceae
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Firmicutes
Propagated regulon:
Target genome	Lactobacillus casei ATCC 334
Orthologous TF(s)	LSEI_1706
Regulated genes	5

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Predicted regulatory interactions in *Lactobacillus casei ATCC 334*
	Locus tag	Position	Score	Sequence
Position: -133 Score: 5 Sequence: ACACACTATATAGTGT Position: -131 Score: 5.5 Sequence: ACACTATATAGTGTAT Locus tag: LSEI_0131
	LSEI_0131	-133	5	ACACACTATATAGTGT
		-131	5.5	ACACTATATAGTGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Lactobacillus acidophilus NCFM	LBA0160	-58	4.5	ATACAAGATGTTGTGC
Lactobacillus casei ATCC 334	LSEI_0131	-133	5	ACACACTATATAGTGT
		-131	5.5	ACACTATATAGTGTAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	LBUL_0185	-173	5.3	CCACAATATCTGGTAT
		-131	4.6	AAACAAGATGTAGTGG
Lactobacillus fermentum IFO 3956	LAF_1376	-99	4.7	CCACAAGATCTTGTAA
		-68	5.3	AAACTATATGTTGTGT
Lactobacillus helveticus DPC 4571	lhv_0169	-56	5.1	ATACAAGATGTTGTAT
Lactobacillus johnsonii NCC 533	LJ0137	-63	4.6	CTACAATATCATGTAG
Lactobacillus plantarum WCFS1	lp_2932	-80	5.5	CTACTATATATAGTAT
		-49	4.4	GCACTATCAATTGTAT
Lactobacillus reuteri JCM 1112	LAR_1249	-92	5.3	CCACAACATATAGTGT
Lactobacillus rhamnosus GG	LGG_00138	-131	5.5	CCACTATATAGTGTAT
Lactobacillus sakei subsp. sakei 23K	LSA1459	-75	5.1	ACACTATATATAGTTG
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1332	-108	5.5	ATACTATATATAGTGT
		-76	5.9	ACACTATATATTGTAT
Pediococcus pentosaceus ATCC 25745	PEPE_0484	-133	5.7	ATACTATATATTGTAT

Position: -107 Score: 4.9 Sequence: CACCAATATATTGTAT Locus tag: LSEI_1204
	LSEI_1204	-107	4.9	CACCAATATATTGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pnuN
Ortholog function: NrdR-regulated deoxyribonucleotide transporter, PnuC-like
Lactobacillus acidophilus NCFM	LBA1653	-53	5.5	GCACAATATATAGTAT
Lactobacillus brevis ATCC 367	LVIS_0311	-82	5.8	CCACAATATATTGTGT
		-41	3.5	GTACTAAATATAGAAA
Lactobacillus casei ATCC 334	LSEI_1204	-107	4.9	CACCAATATATTGTAT
		-105	3.6	CCAATATATTGTATAT
Lactobacillus helveticus DPC 4571	lhv_1757	-172	3.7	ACACAACATATAGATA
		-140	4.5	GCACAATATTTTGTAA
		-50	4.9	ACACAAAATGTTGTAT
Lactobacillus johnsonii NCC 533	LJ0643	-46	5.7	GCACAATATATTGTGT
Lactobacillus plantarum WCFS1	lp_0259	-108	5.7	ATACAATATATTGTGT
		-78	4.8	ACACTACATGTAGTAG
Lactobacillus reuteri JCM 1112	LAR_1670	-72	5.6	CCACAATATCTTGTGT
		-30	4.9	GCACAACATATAGTAG
Lactobacillus rhamnosus GG	LGG_01221	-139	3.9	TTAGTACATGTTGTGG
		-107	4.9	CACCAATATATTGTAT
Lactobacillus sakei subsp. sakei 23K	LSA1189	-155	4.2	CTACCATATTTTGAAT
		-105	5.4	GTACTATATATAGTGT

Position: -85 Score: 4.6 Sequence: CCCCAAGATATGGTAT Locus tag: LSEI_1467
	LSEI_1467	-85	4.6	CCCCAAGATATGGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdH
Ortholog function: Glutaredoxin-like protein NrdH
Lactobacillus brevis ATCC 367	LVIS_0597	-126	4.5	ACACCATATTTGGTAG
		-94	4.6	CTACCAAATATGGTGT
Lactobacillus casei ATCC 334	LSEI_1467	-85	4.6	CCCCAAGATATGGTAT
Lactobacillus rhamnosus GG	LGG_01473	-85	4.6	CCCCAAGATATGGTGT
Lactobacillus sakei subsp. sakei 23K	LSA0942	-89	5	CTACCATATCTGGTAT
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1230	-84	5.5	CCACAATATATGGTGT
		-51	4.9	TCTCTATATATTGTAT

Position: -113 Score: 4.3 Sequence: ATACTACATCTTGGGG Locus tag: LSEI_1742
	LSEI_1742	-113	4.3	ATACTACATCTTGGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdG
Ortholog function: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Lactobacillus acidophilus NCFM	LBA0161	-58	4.5	ATACAAGATGTTGTGC
Lactobacillus casei ATCC 334	LSEI_1742	-113	4.3	ATACTACATCTTGGGG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	LBUL_0186	-173	5.3	CCACAATATCTGGTAT
		-131	4.6	AAACAAGATGTAGTGG
Lactobacillus fermentum IFO 3956	LAF_1375	-99	4.7	CCACAAGATCTTGTAA
		-68	5.3	AAACTATATGTTGTGT
Lactobacillus helveticus DPC 4571	lhv_0170	-56	5.1	ATACAAGATGTTGTAT
Lactobacillus johnsonii NCC 533	LJ0138	-63	4.6	CTACAATATCATGTAG
Lactobacillus plantarum WCFS1	lp_2931	-80	5.5	CTACTATATATAGTAT
		-49	4.4	GCACTATCAATTGTAT
Lactobacillus reuteri JCM 1112	LAR_1248	-92	5.3	CCACAACATATAGTGT
Lactobacillus rhamnosus GG	LGG_01800	-145	5	ATACTACATCTTGTAG
Lactobacillus sakei subsp. sakei 23K	LSA1458	-75	5.1	ACACTATATATAGTTG
Lactobacillus salivarius subsp. salivarius UCC118	LSL_1331	-108	5.5	ATACTATATATAGTGT
		-76	5.9	ACACTATATATTGTAT
Pediococcus pentosaceus ATCC 25745	PEPE_0485	-133	5.7	ATACTATATATTGTAT

Position: -31 Score: 5.3 Sequence: ATACCATATCTTGTAT Locus tag: LSEI_2287
	LSEI_2287	-31	5.3	ATACCATATCTTGTAT
Supported by regulated orthologs from reference regulons

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NrdR regulog to Lactobacillus casei ATCC 334

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

The page you are looking for does not exist.

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NrdR regulog to Lactobacillus casei ATCC 334

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

The page you are looking for does not exist.

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --