Propagation of Zur regulog to Lactobacillus rhamnosus GG
| Source regulog: | Zur - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus rhamnosus GG |
| Orthologous TF(s) | LGG_02012 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -39
Score: 6.4 Sequence: TAAATCGTAATCGTTACCGTTTG
Locus tag: LGG_00285
|
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| LGG_00285 | -39 | 6.4 | TAAATCGTAATCGTTACCGTTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: znuC | ||||
| Ortholog function: Zinc ABC transporter, ATP-binding protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0471 | -46 | 6.6 | TAAACGGTAATCATTACTGTTTA |
| Lactobacillus casei ATCC 334 | LSEI_0242 | -39 | 6.4 | TAAACCGTAATCGTTACCGTTTA |
| Lactobacillus fermentum IFO 3956 | LAF_0192 | -48 | 6.7 | TTAATCGTAAGGATTACGATTTA |
| Lactobacillus plantarum WCFS1 | lp_0463 | -51 | 6.9 | AAAATAGTAATCATTACGATTTA |
| Lactobacillus reuteri JCM 1112 | LAR_0208 | -36 | 6.8 | TAAATAGTAACGATTACGATTAA |
| Lactobacillus rhamnosus GG | LGG_00285 | -39 | 6.4 | TAAATCGTAATCGTTACCGTTTG |
| Lactobacillus sakei subsp. sakei 23K | LSA0283 | -37 | 6.5 | TAAAGCGTAACTATTACGATTTA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1586 | -40 | 7 | TAAAAAGTAATGATTACTATATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0804 | -171 | 6.2 | TTTAAAGTAATCATTACTTTTTG |
| -142 | 6.2 | TTAATAGTAATGATTACTATAAT | ||
| Oenococcus oeni PSU-1 | OEOE_1187 | -118 | 6 | TAACAAGTAATCATTACTAAGTA |
| -76 | 5.5 | GTAAAAGTAATATTTACCATTAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0290 | -33 | 6.9 | TAAATAGTAATTATTACTCTTTA |
|
Position: -70
Score: 5.4 Sequence: CTAATCGTAACCAGTACGATTTG
Locus tag: LGG_02012
|
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| LGG_02012 | -70 | 5.4 | CTAATCGTAACCAGTACGATTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zur | ||||
| Ortholog function: Zinc homeostasis transcriptional regulator Zur, Fur family | ||||
| Lactobacillus casei ATCC 334 | LSEI_2025 | -69 | 6.5 | TTAATCGTAATCAATACGATTTA |
| Lactobacillus fermentum IFO 3956 | LAF_1665 | -37 | 5.8 | AAAAACGTAATCATTACTAAAAA |
| Lactobacillus plantarum WCFS1 | lp_0868 | -56 | 6.9 | TAAATAGTAATGATTATGATTTA |
| Lactobacillus rhamnosus GG | LGG_02012 | -70 | 5.4 | CTAATCGTAACCAGTACGATTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1450 | -35 | 6.6 | TAGAAAGTAAAGATTACTATTTA |
| Oenococcus oeni PSU-1 | OEOE_1189 | -95 | 5.4 | TTAATGGTAAATATTACTTTTAC |
| -53 | 6 | TACTTAGTAATGATTACTTGTTA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0386 | -36 | 7.3 | TAAAACGTAATGATTACTATTTA |
|
Position: -243
Score: 6.8 Sequence: TTAAGCGTAATGATTACGATTTA
Locus tag: LGG_02422
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| LGG_02422 | -243 | 6.8 | TTAAGCGTAATGATTACGATTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpsN2 | ||||
| Ortholog function: Small subunit ribosomal protein S14, zinc-independent | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0360 | -37 | 5.9 | TAAAGCGTAATAATTACTATCAA |
| Lactobacillus casei ATCC 334 | LSEI_2425 | -248 | 6.9 | TAAATAGTAATGATTACGAATTA |
| Lactobacillus fermentum IFO 3956 | LAF_1127 | -82 | 6.5 | TAAATGGTAATAATTACTATTTG |
| Lactobacillus plantarum WCFS1 | lp_2216 | -125 | 5.6 | AAAATAGTAGCTGTTACGATTTA |
| Lactobacillus rhamnosus GG | LGG_02422 | -243 | 6.8 | TTAAGCGTAATGATTACGATTTA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1944 | -63 | 5.7 | TAAATCGTAATTGATATCATTTA |
| -42 | 7.3 | TAAAAAGTAATGATTACTATTTA | ||
|
Position: -40
Score: 6.9 Sequence: TAAATCGTAATGATTACGTTTTG
Locus tag: LGG_02423
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| LGG_02423 | -40 | 6.9 | TAAATCGTAATGATTACGTTTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: znuA | ||||
| Ortholog function: Zinc ABC transporter, substrate-binding protein | ||||
| Lactobacillus casei ATCC 334 | LSEI_2427 | -183 | 7 | TAATTCGTAATCATTACTATTTA |
| -40 | 6.7 | TAAATCGTAATTATTACGTTTTG | ||
| Lactobacillus rhamnosus GG | LGG_02423 | -181 | 6.7 | TAAATCGTAATCATTACGCTTAA |
| -40 | 6.9 | TAAATCGTAATGATTACGTTTTG | ||