Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PurR regulog to Pediococcus pentosaceus ATCC 25745

Reference regulog properties
Source regulog: PurR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: PurR
Regulation mode: repressor
Biological process: Purine metabolism
Effector: 5-phosphoribosyl 1-pyrophosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Pediococcus pentosaceus ATCC 25745
Orthologous TF(s) PEPE_0292
Regulated genes 10
Built upon 76 sites [see more]
Predicted regulatory interactions in Pediococcus pentosaceus ATCC 25745
Locus tag Position Score Sequence
Position: -103
Score: 5.2
Sequence: AAATCCGAACATT
Locus tag: PEPE_0292
PEPE_0292 -103 5.2 AAATCCGAACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purR
Ortholog function: Purine metabolism transcriptional regulator PurR, PurR family
Lactobacillus acidophilus NCFM LBA0218 -27 4.8 AAAACCAAACATT
Lactobacillus brevis ATCC 367 LVIS_0474 -91 5.3 AAACCCGAACAAT
Lactobacillus casei ATCC 334 LSEI_2587 -126 4.8 AAATGCGAACGTT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0302 -54 4.3 AAAAACAGACATT
Lactobacillus fermentum IFO 3956 LAF_0194 -98 5.2 AAAGACGAACAAT
Lactobacillus helveticus DPC 4571 lhv_0234 -27 4.1 AAAGCCAAACGTT
Lactobacillus johnsonii NCC 533 LJ0207 -105 4.1 TATTACGAACAAT
Lactobacillus plantarum WCFS1 lp_0466 12 4.3 AGAAGCGAACGTT
Lactobacillus reuteri JCM 1112 LAR_0210 -64 5.2 AAATCCGAACATT
Lactobacillus rhamnosus GG LGG_02564 -126 4.8 AAATGCGAACGTT
Lactobacillus sakei subsp. sakei 23K LSA1651 -120 5.6 AAAAACGAACAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0315 -116 5.4 AAAAACGAACTTT
Pediococcus pentosaceus ATCC 25745 PEPE_0292 -103 5.2 AAATCCGAACATT
Position: 8
Score: 4.1
Sequence: AAATACAATCATT
Locus tag: PEPE_0293
PEPE_0293 8 4.1 AAATACAATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glmU
Ortholog function: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
Lactobacillus acidophilus NCFM LBA0219 -27 4.8 AAAACCAAACATT
Lactobacillus brevis ATCC 367 LVIS_0475 -91 5.3 AAACCCGAACAAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0303 -54 4.3 AAAAACAGACATT
Lactobacillus fermentum IFO 3956 LAF_0195 -98 5.2 AAAGACGAACAAT
Lactobacillus helveticus DPC 4571 lhv_0235 -27 4.1 AAAGCCAAACGTT
Lactobacillus johnsonii NCC 533 LJ0208 -105 4.1 TATTACGAACAAT
Lactobacillus plantarum WCFS1 lp_0467 12 4.3 AGAAGCGAACGTT
Lactobacillus reuteri JCM 1112 LAR_0211 -64 5.2 AAATCCGAACATT
Lactobacillus sakei subsp. sakei 23K LSA1648 -24 4.2 AATCACGAATATT
Pediococcus pentosaceus ATCC 25745 PEPE_0293 -103 5.2 AAATCCGAACATT
Position: -122
Score: 5.2
Sequence: AAATACGAACTAT
Locus tag: PEPE_0303
PEPE_0303 -122 5.2 AAATACGAACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pbuG
Ortholog function: Guanine/hypoxanthine permease
Lactobacillus brevis ATCC 367 LVIS_2274 -66 5.6 AAACACGAACAAT
Lactobacillus fermentum IFO 3956 LAF_1806 -67 4.3 AAAGCCGAATATT
Lactobacillus plantarum WCFS1 lp_0848 -57 5.3 AAACACGAACGTT
Pediococcus pentosaceus ATCC 25745 PEPE_0303 -122 5.2 AAATACGAACTAT
Position: -88
Score: 5.1
Sequence: ATAAACGAACATT
Locus tag: PEPE_0381
PEPE_0381 -88 5.1 ATAAACGAACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pbuO
Ortholog function: Guanine/hypoxanthine permease
Lactobacillus sakei subsp. sakei 23K LSA0087 -101 5.4 AAACACGAACTAT
Pediococcus pentosaceus ATCC 25745 PEPE_0381 -88 5.1 ATAAACGAACATT
Position: -99
Score: 4.6
Sequence: GAAAACGAACTTT
Locus tag: PEPE_0595
PEPE_0595 -99 4.6 GAAAACGAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaC
Ortholog function: GMP reductase (EC 1.7.1.7)
Lactobacillus acidophilus NCFM LBA1893 -120 4.4 AAAACCGAATTAT
Lactobacillus brevis ATCC 367 LVIS_0226 -247 5.3 AAAAGCGAACATT
Lactobacillus casei ATCC 334 LSEI_0911 -135 5.6 AAACACGAACATT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0246 -111 4.5 AAATCCGAATAAT
-4 5 AAAAATGAACAAT
Lactobacillus johnsonii NCC 533 LJ0441 -160 4.1 AAAACCGAAGACT
Lactobacillus plantarum WCFS1 lp_3271 -280 5.6 AAACACGAACATT
-239 4.5 AGAGACGAACAAT
-135 5.1 AAACAAGAACATT
Lactobacillus rhamnosus GG LGG_00874 -134 5.6 AAACACGAACATT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1139 -130 5.6 AAACACGAACATT
Oenococcus oeni PSU-1 OEOE_0535 -176 4.1 AAAAACTAACAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0595 -99 4.6 GAAAACGAACTTT
Position: -117
Score: 5.1
Sequence: AAACACGAACCAT
Locus tag: PEPE_1247
PEPE_1247 -117 5.1 AAACACGAACCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purA
Ortholog function: Adenylosuccinate synthetase (EC 6.3.4.4)
Lactobacillus acidophilus NCFM LBA1892 -123 4.9 AAAATCGAACTAT
Lactobacillus brevis ATCC 367 LVIS_0227 -247 5.3 AAAAGCGAACATT
Lactobacillus fermentum IFO 3956 LAF_0044 -123 5.3 AAAACCGAACAAT
Lactobacillus helveticus DPC 4571 lhv_2030 -134 4.9 AAAATCGAACTAT
Lactobacillus johnsonii NCC 533 LJ0442 -120 4.3 AAAAATGAATATT
Lactobacillus plantarum WCFS1 lp_3270 -280 5.6 AAACACGAACATT
-239 4.5 AGAGACGAACAAT
-135 5.1 AAACAAGAACATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1460 -132 4.2 AAAAAGCAACATT
Pediococcus pentosaceus ATCC 25745 PEPE_1247 -117 5.1 AAACACGAACCAT
Position: 21
Score: 3.8
Sequence: CTAAACGAAGAAT
Locus tag: PEPE_1461
PEPE_1461 21 3.8 CTAAACGAAGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purF
Ortholog function: Amidophosphoribosyltransferase (EC 2.4.2.14)
Lactobacillus acidophilus NCFM LBA1555 -151 5.3 AAACACGAACGAT
Lactobacillus casei ATCC 334 LSEI_1750 -107 5.3 AAACACGAACGAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1334 -60 3.4 AATTACGAATAGT
Lactobacillus fermentum IFO 3956 LAF_0128 -155 5.6 AAACACGAACATT
Lactobacillus plantarum WCFS1 lp_2723 -104 5 TAACACGAACATT
Lactobacillus reuteri JCM 1112 LAR_0135 -153 5.6 AAACACGAACAAT
Lactobacillus rhamnosus GG LGG_01808 -108 5.5 AAATACGAACATT
-96 4.3 TAAAACGAATAAT
Lactobacillus sakei subsp. sakei 23K LSA0659 -110 4.9 ATAAACGAACTTT
-58 5.6 AAAAACGAACAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0667 -27 5.2 AAAGACGAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0724 -137 4.1 ATATACGAACTCT
Pediococcus pentosaceus ATCC 25745 PEPE_1461 -123 5.4 AAAAACGAACTTT
Position: -123
Score: 5.4
Sequence: AAAAACGAACTTT
Locus tag: PEPE_1467
PEPE_1467 -123 5.4 AAAAACGAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purE
Ortholog function: Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Lactobacillus acidophilus NCFM LBA1561 -59 4.4 ATATAAGAACAAT
Lactobacillus casei ATCC 334 LSEI_1756 -107 5.3 AAACACGAACGAT
Lactobacillus fermentum IFO 3956 LAF_0118 -106 5.2 AAATCCGAACAAT
Lactobacillus helveticus DPC 4571 lhv_1534 -73 4.1 AAATACAAACAAA
Lactobacillus plantarum WCFS1 lp_2729 -104 5 TAACACGAACATT
Lactobacillus reuteri JCM 1112 LAR_0128 -102 4.9 ATACACGAACTAT
Lactobacillus rhamnosus GG LGG_01814 -108 5.5 AAATACGAACATT
-96 4.3 TAAAACGAATAAT
Lactobacillus sakei subsp. sakei 23K LSA0652 -112 4.3 TAACACGTACAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0515 -68 4.1 AAATTCGAATTTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0718 -137 4.1 ATATACGAACTCT
Oenococcus oeni PSU-1 OEOE_1138 -130 4.6 AAACACGAAATAT
-79 5.3 AAAAACGAACGTT
Pediococcus pentosaceus ATCC 25745 PEPE_1467 -123 5.4 AAAAACGAACTTT
© 2009-2020 RegPrecise