Propagation of CcpA regulog to Lactobacillus plantarum JDM1
| Source regulog: | CcpA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus plantarum JDM1 |
| Orthologous TF(s) | JDM1_1890 |
| Regulated genes | 61 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -96
Score: 4.4 Sequence: ATGAAAGCGTAGTCAA
Locus tag: JDM1_0070
|
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| JDM1_0070 | -96 | 4.4 | ATGAAAGCGTAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yxjF | ||||
| Ortholog function: Predicted short-chain alcohol dehydrogenase | ||||
| Lactobacillus casei ATCC 334 | LSEI_0715 | -98 | 4.7 | TTGAAAGCGCTATCGT |
| Lactobacillus plantarum WCFS1 | lp_0060 | -96 | 4.4 | ATGAAAGCGTAGTCAA |
| Lactobacillus rhamnosus GG | LGG_00704 | -106 | 4.7 | TTGAAAGCGCTATCGT |
|
Position: -193
Score: 4.2 Sequence: ATGTAGCCGGTTACAT
Locus tag: JDM1_0144
|
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| JDM1_0144 | -193 | 4.2 | ATGTAGCCGGTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lhv_0924 | ||||
| Ortholog function: Predicted transcriptional regulator, GntR family | ||||
| Lactobacillus helveticus DPC 4571 | lhv_0924 | -236 | 5.2 | TTGTAAGCGATTTCAA |
| -149 | 4.7 | TAGGAACCGCTTTCAT | ||
| Lactobacillus plantarum WCFS1 | lp_0152 | -193 | 4.2 | ATGTAGCCGGTTACAT |
| Lactobacillus rhamnosus GG | LGG_02679 | -170 | 4.7 | TTAAATGCGCTTTCAT |
| Oenococcus oeni PSU-1 | OEOE_1211 | -167 | 4.4 | ATGAAATCGCTACCAT |
| -115 | 4 | ATGTAAACTCTTTTTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1777 | -141 | 4.7 | TTGAATTCGCTTTCAT |
|
Position: -58
Score: 5 Sequence: TTGAAAGCGGATTCAT
Locus tag: JDM1_0157
|
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| JDM1_0157 | -58 | 5 | TTGAAAGCGGATTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dhaK | ||||
| Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK | ||||
| Lactobacillus acidophilus NCFM | LBA1433 | -35 | 4.7 | TTGTAAGCGATTGCAT |
| Lactobacillus plantarum WCFS1 | lp_0168 | -58 | 4.6 | TTGAAATCGGATTCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1633 | -64 | 5 | TTGAAAGCGTTTATAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1662 | -63 | 4.8 | TTGTAATCGCTTTCTA |
|
Position: -101
Score: 4 Sequence: CTGTTAACGTTAACAT
Locus tag: JDM1_0164
|
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| JDM1_0164 | -101 | 4 | CTGTTAACGTTAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malX | ||||
| Ortholog function: Maltose/maltodextrin ABC transporter, substrate-binding protein | ||||
| Lactobacillus plantarum WCFS1 | lp_0175 | -101 | 4 | CTGTTAACGTTAACAT |
|
Position: -212
Score: 4.3 Sequence: ATAAAACCGCTTACAC
Position: -157
Score: 4.1 Sequence: ATGTTAGCGTTTCAAA
Position: -58
Score: 4.1 Sequence: TGTAAAGCGCTTGCAT
Locus tag: JDM1_0175
|
||||
| JDM1_0175 | -212 | 4.3 | ATAAAACCGCTTACAC | |
| -157 | 4.1 | ATGTTAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrA | ||||
| Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA0401 | -219 | 4.7 | ATGTAAGCGTTATCTT |
| -30 | 4.9 | ATAAAAGCGTTTACAT | ||
| Lactobacillus fermentum IFO 3956 | LAF_1578 | -126 | 4.4 | TTGGCAGCGATTTCAA |
| -57 | 4.5 | AGAAAAGCGCTTACAA | ||
| Lactobacillus johnsonii NCC 533 | LJ0519 | -214 | 4.6 | ATGTAAACGCATTCTT |
| -37 | 4.4 | TTTAAAACGCTTACAC | ||
| Lactobacillus plantarum WCFS1 | lp_0185 | -212 | 4.3 | ATAAAACCGCTTACAC |
| -157 | 4 | ATGTCAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1792 | -183 | 4.2 | ATGTAAACGTTTGATA |
| -54 | 4.5 | TGAAAAGCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0066 | -52 | 4.2 | CATTAAGCGTTTTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0518 | -212 | 4.3 | ATAAAACCGCTTACAC |
| -157 | 4 | ATGTCAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
|
Position: -59
Score: 4.6 Sequence: GTGTAAGCGGTTTTAT
Locus tag: JDM1_0176
|
||||
| JDM1_0176 | -59 | 4.6 | GTGTAAGCGGTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrB | ||||
| Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26) | ||||
| Lactobacillus acidophilus NCFM | LBA0400 | -220 | 4.9 | ATGTAAACGCTTTTAT |
| -188 | 4.5 | ATGATAACGTATTCAA | ||
| -31 | 4.6 | AAGATAACGCTTACAT | ||
| Lactobacillus johnsonii NCC 533 | LJ0518 | -214 | 4.7 | GTGTAAGCGTTTTAAA |
| -184 | 4.3 | ATGATAGCGTATTCTA | ||
| -37 | 4.6 | AAGAATGCGTTTACAT | ||
| Lactobacillus plantarum WCFS1 | lp_0187 | -213 | 4.3 | ATGCAAGCGCTTTACA |
| -59 | 4.6 | GTGTAAGCGGTTTTAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1793 | -188 | 4.5 | TTGTAAACGCTTTTCA |
| -163 | 4.3 | ATACAACCGTTTACAT | ||
| -59 | 4.1 | TATCAAACGTTTACAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0065 | -121 | 4.1 | ATTTAACCGCTTTTTT |
| -33 | 4.5 | AAGAATACGTTTACAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0519 | -213 | 4.3 | ATGCAAGCGCTTTACA |
| -59 | 4.6 | GTGTAAGCGGTTTTAT | ||
|
Position: -63
Score: 4.3 Sequence: TTGAAACCGCTTACCC
Locus tag: JDM1_0214
|
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| JDM1_0214 | -63 | 4.3 | TTGAAACCGCTTACCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2888 | -65 | 4.5 | TTGTCAGCGATTACAT |
| Lactobacillus plantarum WCFS1 | lp_0230 | -63 | 4.8 | TTGAAACCGCTTACCA |
| Lactobacillus rhamnosus GG | LGG_02912 | -65 | 4.5 | TTGTCAGCGATTACAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1620 | -56 | 4.2 | CAGTAAACGTTATCAT |
|
Position: -37
Score: 4.8 Sequence: ATGATACCGCTTTCAA
Locus tag: JDM1_0223
|
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| JDM1_0223 | -37 | 4.8 | ATGATACCGCTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndk | ||||
| Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0748 | -108 | 4 | ATGAAAACGATGAAAA |
| Lactobacillus plantarum WCFS1 | lp_0242 | -37 | 4.8 | ATGATACCGCTTTCAA |
| Lactobacillus reuteri JCM 1112 | LAR_0192 | -74 | 4.6 | CTAAAAACGCTTTCAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1571 | -62 | 4.5 | TTGTGAACGTTTTCAT |
|
Position: -29
Score: 4.7 Sequence: ATGAAAACGATAACAA
Locus tag: JDM1_0234
|
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| JDM1_0234 | -29 | 4.7 | ATGAAAACGATAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family | ||||
| Lactobacillus acidophilus NCFM | LBA1013 | -169 | 4.7 | TATAAAGCGTTTTCAT |
| -102 | 4.5 | TTGAAAGCGATCACAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0629 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0759 | 4 | 4.4 | AAGTATCCGCTTTCAT |
| Lactobacillus plantarum WCFS1 | lp_0262 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00601 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1201 | -145 | 4.2 | GTAAAAGCGCTTTCTG |
| -82 | 4.4 | TTTGAACCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1513 | -130 | 4.2 | ATGAAATTGTTTACAA |
| Oenococcus oeni PSU-1 | OEOE_1339 | -122 | 4.1 | TTGAAAACGAAAACTT |
| -66 | 4.5 | TGAAAAACGTTTTCAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1805 | -177 | 4.7 | TTGTAAGCGCTTGCTA |
| -34 | 4.6 | ATGTAAGCGTTTCTAA | ||
|
Position: -46
Score: 5 Sequence: ATGATAGCGTTTTCAT
Locus tag: JDM1_0332
|
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| JDM1_0332 | -46 | 5 | ATGATAGCGTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpK | ||||
| Ortholog function: Glycerol kinase (EC 2.7.1.30) | ||||
| Lactobacillus plantarum WCFS1 | lp_0370 | -46 | 5 | ATGATAGCGTTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1623 | -84 | 4.2 | TTAAAAACGATTTATA |
| -51 | 5 | TAGAAAGCGCTTTCTT | ||
|
Position: -78
Score: 5.1 Sequence: TTGTAAGCGCTTTTAA
Locus tag: JDM1_0369
|
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| JDM1_0369 | -78 | 5.1 | TTGTAAGCGCTTTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gmuC | ||||
| Ortholog function: PTS system, Oligo-beta-mannoside permease IIC component | ||||
| Lactobacillus plantarum WCFS1 | lp_0439 | -78 | 5.1 | TTGTAAGCGCTTTTAA |
|
Position: -218
Score: 3.9 Sequence: AAATAATCGTTTTTAA
Position: 1
Score: 4 Sequence: TGGTAAGCATTATCAT
Locus tag: JDM1_0523
|
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| JDM1_0523 | -218 | 3.9 | AAATAATCGTTTTTAA | |
| 1 | 4 | TGGTAAGCATTATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manL | ||||
| Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA0452 | -42 | 4.5 | ATAAAAGCGGATTCAT |
| Lactobacillus fermentum IFO 3956 | LAF_0391 | -140 | 4.7 | TAGTAAGCGTTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0480 | -42 | 4.5 | ATAAAAGCGGATTCAT |
| Lactobacillus johnsonii NCC 533 | LJ0503 | -106 | 4.4 | ATGCAAGCATTTTCAA |
| -68 | 4.1 | AAGCAAACGTATACAT | ||
| Lactobacillus plantarum WCFS1 | lp_0575 | 1 | 4 | TGGTAAGCATTATCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0449 | -136 | 4.2 | AGTAAAGCGTTTTAAA |
| -57 | 4.6 | TTGTTAGCGTTTTTAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0086 | -109 | 4.3 | TAGAAATCGTTTACAC |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0654 | -131 | 4.3 | TAGTAAGTGTTTTCAA |
| -61 | 4.1 | ATGAAAAGGCTTTATT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1768 | -100 | 4.7 | ATGTAAACGGTAACAA |
| -75 | 5.4 | TTGAAAGCGTTTACAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1518 | -146 | 4.5 | TTGAAAGCGTTTTTTG |
|
Position: -40
Score: 4.4 Sequence: TTGTAAGCACTAACAA
Locus tag: JDM1_0633
|
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| JDM1_0633 | -40 | 4.4 | TTGTAAGCACTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgm | ||||
| Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0949 | -102 | 3.9 | TTGAGCGCGTTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0862 | -121 | 4.3 | ATAAAAGCGTTTAATA |
| Lactobacillus plantarum WCFS1 | lp_0764 | -40 | 4.4 | TTGTAAGCACTAACAA |
| Lactobacillus rhamnosus GG | LGG_00921 | -100 | 3.9 | TTGAGCGCGTTTTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0446 | -77 | 4.1 | AAAAAAACGCTTTCTG |
|
Position: -326
Score: 4.8 Sequence: TTGACAACGCTTACAA
Locus tag: JDM1_0690
|
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| JDM1_0690 | -326 | 4.8 | TTGACAACGCTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lp_0827 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0695 | -166 | 4.9 | TTGACAGCGCTTACAA |
| Lactobacillus fermentum IFO 3956 | LAF_0383 | -179 | 4.9 | TTGACAGCGCTTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0406 | -149 | 4.8 | ATGGAAACGCTATCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0428 | -174 | 4.8 | TTGACAACGCTTACAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1300 | -200 | 4.3 | TTGACACCGCTTACAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0479 | -181 | 5.1 | TTGTAAGCGTTATCAT |
|
Position: -86
Score: 4.9 Sequence: ATAAAAGCGTTTACAT
Locus tag: JDM1_0707
|
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| JDM1_0707 | -86 | 4.9 | ATAAAAGCGTTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxB | ||||
| Ortholog function: Pyruvate oxidase (EC 1.2.3.3) | ||||
| Lactobacillus acidophilus NCFM | LBA1974 | -110 | 4.4 | GAAAAAGCGGTTTCAT |
| -78 | 4 | AAGATAGCGTTTTGAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_0313 | -152 | 4.3 | TTGAAAGCGTGAACAA |
| Lactobacillus casei ATCC 334 | LSEI_1784 | -149 | 4 | GTTTAAGCGTTTTATA |
| -92 | 4.4 | ATGAAAGGGCTTGCAT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_2034 | -76 | 4 | TTGATAGCACTTGCAA |
| Lactobacillus johnsonii NCC 533 | LJ1853 | -79 | 4.1 | CAGCAACCGCTTTCAA |
| Lactobacillus plantarum WCFS1 | lp_0849 | -390 | 4.3 | ATGTAAGCGTCATCAT |
| -86 | 4.9 | ATAAAAGCGTTTACAT | ||
| Lactobacillus rhamnosus GG | LGG_01836 | -136 | 4.6 | ATTAAAGCGCTTTCCT |
| -89 | 4.1 | GTGAAAGGGTTTGCAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1830 | -71 | 4.1 | TTTGTAACGCTTACAA |
|
Position: -147
Score: 4.5 Sequence: GAGAAAACGCTATCAT
Locus tag: JDM1_0754
|
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| JDM1_0754 | -147 | 4.5 | GAGAAAACGCTATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: licT | ||||
| Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family | ||||
| Lactobacillus acidophilus NCFM | LBA1708 | -131 | 5.1 | ATGAAAGCGTTATCAT |
| Lactobacillus johnsonii NCC 533 | LJ0542 | -126 | 4.6 | AAGAAAGCGATATCAT |
| Lactobacillus plantarum WCFS1 | lp_0904 | -147 | 4.5 | GAGAAAACGCTATCAT |
|
Position: -61
Score: 4.2 Sequence: TTGATAAGGGTTTCAT
Locus tag: JDM1_0760
|
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| JDM1_0760 | -61 | 4.2 | TTGATAAGGGTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coaA | ||||
| Ortholog function: Pantothenate kinase (EC 2.7.1.33) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_1646 | -35 | 4 | ATGTAAGGGCTATCCA |
| Lactobacillus plantarum WCFS1 | lp_0913 | -61 | 4.2 | TTGATAAGGGTTTCAT |
| Lactobacillus reuteri JCM 1112 | LAR_1512 | -44 | 4.6 | GAGTAACCGTTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0138 | -44 | 3.8 | ATGTAACCGTTTAGCA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1538 | -75 | 4.2 | TTGAAAGCGTAATATT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1881 | -107 | 4.1 | TTGTATACTGTTTCAT |
|
Position: -135
Score: 4 Sequence: ATGAAAGGGCTTGTAT
Locus tag: JDM1_1076
|
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| JDM1_1076 | -135 | 4 | ATGAAAGGGCTTGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: Phosphotransferase system, HPr-related protein | ||||
| Lactobacillus acidophilus NCFM | LBA0639 | -111 | 4.4 | ATGTAAACTGTTACAT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0512 | -108 | 4.7 | ATGAAAACATTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_0686 | -109 | 4.4 | ATGTAAGCTATTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0816 | -109 | 4.6 | ATGTAAACATTTACAT |
| Lactobacillus plantarum WCFS1 | lp_1273 | -135 | 4 | ATGAAAGGGCTTGTAT |
| Lactobacillus reuteri JCM 1112 | LAR_1256 | -102 | 4 | TATTTAACGCTTACAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0388 | -91 | 4.1 | TTGTTATCGTTTGCAT |
| -68 | 4.2 | ATGTAAACGTGTTCTT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1780 | -157 | 5.3 | ATGTAAACGTTTTCAT |
| -63 | 4.7 | TTGTAAGCGCTTTGAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0609 | -127 | 4 | ATGTAAGGGCTTGCTT |
|
Position: -186
Score: 4.5 Sequence: ATGAAAGGGCTTTTAT
Position: -138
Score: 4.3 Sequence: ATGAAAACGGTTATAC
Locus tag: JDM1_1225
|
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| JDM1_1225 | -186 | 4.5 | ATGAAAGGGCTTTTAT | |
| -138 | 4.3 | ATGAAAACGGTTATAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sufC | ||||
| Ortholog function: Iron-sulfur cluster assembly ATPase protein | ||||
| Lactobacillus plantarum WCFS1 | lp_1468 | -186 | 4.5 | ATGAAAGGGCTTTTAT |
| -138 | 4.3 | ATGAAAACGGTTATAC | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1113 | -74 | 3.9 | TGAAAAGCGTTCTCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1881 | -181 | 4.2 | ATGTAAGCGTTATTCT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_2038 | 29 | 4.4 | GAGAAAACGCTTAAAA |
|
Position: -6
Score: 4.3 Sequence: TTGAAAGTGCTTACAG
Locus tag: JDM1_1752
|
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| JDM1_1752 | -6 | 4.3 | TTGAAAGTGCTTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruR | ||||
| Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family | ||||
| Lactobacillus acidophilus NCFM | LBA1779 | -37 | 4.2 | GAGAAAGCGAATACAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1889 | -164 | 4 | GAGAAAGCCTTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_1846 | 12 | 4.3 | GAGAAAGCGGATACAA |
| Lactobacillus johnsonii NCC 533 | LJ0570 | -40 | 4.1 | CTGAAAGCGTTTATCA |
| Lactobacillus plantarum WCFS1 | lp_2095 | -6 | 4.3 | TTGAAAGTGCTTACAG |
| Lactobacillus sakei subsp. sakei 23K | LSA1048 | -130 | 4 | ATGAAAACCTTTACAC |
| -40 | 4.3 | TTGTAAACGATGACAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1166 | -6 | 4.3 | ATGAAAGTGCTTACAG |
|
Position: -118
Score: 4.1 Sequence: TTGGAAGGGCTTGCAA
Position: -67
Score: 4.5 Sequence: ATGAAAACGATTACGA
Locus tag: JDM1_1805
|
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| JDM1_1805 | -118 | 4.1 | TTGGAAGGGCTTGCAA | |
| -67 | 4.5 | ATGAAAACGATTACGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1410 | -117 | 4.4 | ATGAAAGGGCTTGCAA |
| Lactobacillus casei ATCC 334 | LSEI_1305 | -111 | 4.2 | AATAAAACGCTTGCAA |
| -68 | 4.1 | TTGTAAAGATTTTCAT | ||
| Lactobacillus fermentum IFO 3956 | LAF_1140 | -244 | 4.2 | ATGTAACGGCTTTCTT |
| -169 | 4.5 | ATGTAAGCGGTAACTT | ||
| Lactobacillus plantarum WCFS1 | lp_2154 | -118 | 4.1 | TTGGAAGGGCTTGCAA |
| -67 | 4.5 | ATGAAAACGATTACGA | ||
| Lactobacillus reuteri JCM 1112 | LAR_0608 | -90 | 4.7 | ATGAAAGCGCTTGTAT |
| -40 | 4.3 | AAGCAATCGCTTACAT | ||
| Lactobacillus rhamnosus GG | LGG_01320 | -111 | 4.2 | AATAAAACGCTTGCAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1085 | -115 | 4 | TGTAAAACGCTTGCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0153 | -216 | 4 | GTGATAACGATAACAA |
| -67 | 4.5 | TTGTAAGCGTTATATA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0737 | -31 | 4.9 | GTGTAAGCGGTTACAA |
| Oenococcus oeni PSU-1 | OEOE_0328 | -53 | 5.1 | TTGAAAGCGCTTACAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1773 | -107 | 4 | TTTAAAACATTTTAAA |
| -40 | 4.8 | TAGAAAGCGCTTCCAT | ||
|
Position: -121
Score: 5.2 Sequence: ATGAAAGCGATTTCAA
Position: -51
Score: 4 Sequence: ATGAAAACGGATGAAA
Locus tag: JDM1_1890
|
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| JDM1_1890 | -121 | 5.2 | ATGAAAGCGATTTCAA | |
| -51 | 4 | ATGAAAACGGATGAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccpA | ||||
| Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family | ||||
| Lactobacillus acidophilus NCFM | LBA0431 | -75 | 4.4 | CTGTAAACGTTTGCAA |
| Lactobacillus brevis ATCC 367 | LVIS_1203 | -107 | 4.7 | TCGAAAACGTTTTCAA |
| -49 | 4.1 | TTGAAAACGGATGAAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0809 | -94 | 4 | AGTAAAACGCTTGCAT |
| Lactobacillus helveticus DPC 4571 | lhv_0457 | -76 | 4.3 | ATGTAAACGTTTGCAC |
| Lactobacillus johnsonii NCC 533 | LJ0491 | -74 | 4 | TCGTAAACGGTTGCAA |
| Lactobacillus plantarum WCFS1 | lp_2256 | -121 | 5.2 | ATGAAAGCGATTTCAA |
| -51 | 4 | ATGAAAACGGATGAAA | ||
| Lactobacillus rhamnosus GG | LGG_00793 | -95 | 4 | AGTAAAACGCTTGCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0544 | -114 | 4.4 | ATGAAAACACTTATAA |
| -92 | 4.9 | TTGTAAGCGTTTGCAA | ||
| Oenococcus oeni PSU-1 | OEOE_0684 | -59 | 4.6 | ATGTAATCGCTTGCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1250 | -69 | 4.6 | TTGATAACGTATTCAT |
|
Position: -228
Score: 3.9 Sequence: TTTCATCCGTTTTCAT
Position: -158
Score: 5.2 Sequence: TTGAAATCGCTTTCAT
Locus tag: JDM1_1891
|
||||
| JDM1_1891 | -228 | 3.9 | TTTCATCCGTTTTCAT | |
| -158 | 5.2 | TTGAAATCGCTTTCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepQ | ||||
| Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9) | ||||
| Lactobacillus acidophilus NCFM | LBA0430 | -85 | 4.6 | TTGCAAACGTTTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1204 | -103 | 4.9 | TTGAAAACGTTTTCGA |
| Lactobacillus casei ATCC 334 | LSEI_0808 | -229 | 4.2 | ATGCAAGCGTTTTACT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1474 | -89 | 4 | GTGCAATCGCTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0456 | -86 | 4.6 | GTGCAAACGTTTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0490 | -85 | 4.2 | TTGCAACCGTTTACGA |
| Lactobacillus plantarum WCFS1 | lp_2258 | -158 | 5.2 | TTGAAATCGCTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0414 | -120 | 4.1 | ATGCAAGCGGTTTACA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0419 | -125 | 4 | TTGCAAGCGTTTCATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0543 | -124 | 4.9 | TTGCAAACGCTTACAA |
| -102 | 4.2 | TTATAAGTGTTTTCAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1251 | -109 | 4.6 | ATGAATACGTTATCAA |
|
Position: -77
Score: 3.8 Sequence: GAGGAAGCGCTTTTCA
Locus tag: JDM1_2014
|
||||
| JDM1_2014 | -77 | 3.8 | GAGGAAGCGCTTTTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgi | ||||
| Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9) | ||||
| Lactobacillus acidophilus NCFM | LBA0752 | -90 | 4.3 | GTGAATGCGCTTATAA |
| Lactobacillus casei ATCC 334 | LSEI_1126 | -62 | 4 | ATGAAACCACTCTCAT |
| Lactobacillus fermentum IFO 3956 | LAF_1686 | -63 | 4.4 | GAGTTAGCGCTTTCAT |
| Lactobacillus fermentum IFO 3956 | LAF_0411 | -66 | 4.2 | ATGGAAACGTTATCGT |
| Lactobacillus helveticus DPC 4571 | lhv_0795 | -14 | 4 | TAGGAAGCGGATTTAT |
| Lactobacillus plantarum WCFS1 | lp_2502 | -77 | 3.8 | GAGGAAGCGCTTTTCA |
| Lactobacillus reuteri JCM 1112 | LAR_0415 | -69 | 4.4 | TTGAAACCGACTTCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0355 | -37 | 5 | TTGTAACCGATTTCAT |
| Oenococcus oeni PSU-1 | OEOE_0636 | -118 | 3.9 | TTGGAAGCTATTCCAA |
|
Position: -200
Score: 4.3 Sequence: TTGTAACCGTTTTAGT
Locus tag: JDM1_2048
|
||||
| JDM1_2048 | -200 | 4.3 | TTGTAACCGTTTTAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcaD | ||||
| Ortholog function: NADH peroxidase (EC 1.11.1.1) | ||||
| Lactobacillus acidophilus NCFM | LBA1401 | -52 | 4.4 | ATGAAAGAGGTTACAA |
| Lactobacillus plantarum WCFS1 | lp_2544 | -200 | 4.3 | TTGTAACCGTTTTAGT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0137 | -56 | 3.8 | GTGAAAACGTTCTATA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1619 | -81 | 4.7 | TTATAAGCGTTTTAAT |
| -66 | 4.1 | TTGTAAGCGGTTCACA | ||
|
Position: -41
Score: 4.9 Sequence: ATGAAAACGTATACAA
Locus tag: JDM1_2109
|
||||
| JDM1_2109 | -41 | 4.9 | ATGAAAACGTATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxB | ||||
| Ortholog function: Pyruvate oxidase (EC 1.2.3.3) | ||||
| Lactobacillus plantarum WCFS1 | lp_2629 | -41 | 4.1 | ACGAAAACGTATACAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1188 | -89 | 4.8 | TTGTAATCGATTTCAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1372 | -53 | 4.6 | AAGAAAACGTTTGCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1252 | -38 | 4.6 | ACGAAAACGTTTTCAA |
|
Position: -32
Score: 4.9 Sequence: ATGTAATCGTTTACAT
Locus tag: JDM1_2211
|
||||
| JDM1_2211 | -32 | 4.9 | ATGTAATCGTTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nplT | ||||
| Ortholog function: Neopullulanase (EC 3.2.1.135) | ||||
| Lactobacillus acidophilus NCFM | LBA1871 | -49 | 5 | TTGAAAACGGTTTCTT |
| Lactobacillus helveticus DPC 4571 | lhv_2001 | -34 | 4.3 | TTGAAAACGGTTTCCC |
| Lactobacillus johnsonii NCC 533 | LJ0212 | -53 | 5 | TTGTAAGCGCTTATAA |
| Lactobacillus plantarum WCFS1 | lp_2757 | -32 | 4.9 | ATGTAATCGTTTACAT |
| Lactobacillus reuteri JCM 1112 | LAR_1507 | -89 | 4.2 | GTGCAAGCGGTTGCAA |
| -52 | 4.6 | ATGTAAGCGTAATCAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1295 | -76 | 4.3 | AAGGAAGCGGTAACAA |
|
Position: -68
Score: 4.7 Sequence: ATGAAAGCGGTTTATT
Locus tag: JDM1_2232
|
||||
| JDM1_2232 | -68 | 4.7 | ATGAAAGCGGTTTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pts20B | ||||
| Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) | ||||
| Lactobacillus plantarum WCFS1 | lp_2781 | -68 | 4.7 | ATGAAAGCGGTTTATT |
| Oenococcus oeni PSU-1 | OEOE_0338 | -70 | 4.8 | ATGAAAGCGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0281 | -58 | 4.5 | TCGTAAGCGGTTTCAT |
|
Position: -145
Score: 4.3 Sequence: TTGATTTCGCTTTCAT
Locus tag: JDM1_2345
|
||||
| JDM1_2345 | -145 | 4.3 | TTGATTTCGCTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family | ||||
| Lactobacillus acidophilus NCFM | LBA1013 | -169 | 4.7 | TATAAAGCGTTTTCAT |
| -102 | 4.5 | TTGAAAGCGATCACAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0629 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0759 | 4 | 4.4 | AAGTATCCGCTTTCAT |
| Lactobacillus plantarum WCFS1 | lp_0262 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00601 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1201 | -145 | 4.2 | GTAAAAGCGCTTTCTG |
| -82 | 4.4 | TTTGAACCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1513 | -130 | 4.2 | ATGAAATTGTTTACAA |
| Oenococcus oeni PSU-1 | OEOE_1339 | -122 | 4.1 | TTGAAAACGAAAACTT |
| -66 | 4.5 | TGAAAAACGTTTTCAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1805 | -177 | 4.7 | TTGTAAGCGCTTGCTA |
| -34 | 4.6 | ATGTAAGCGTTTCTAA | ||
|
Position: -99
Score: 4.8 Sequence: ATGATAGCGATTTCAA
Locus tag: JDM1_2377
|
||||
| JDM1_2377 | -99 | 4.8 | ATGATAGCGATTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydgI | ||||
| Ortholog function: Putative NAD(P)H nitroreductase | ||||
| Lactobacillus plantarum WCFS1 | lp_2968 | -99 | 4.8 | ATGATAGCGATTTCAA |
|
Position: -43
Score: 4.5 Sequence: AGGAAAGCGTTTTCCA
Locus tag: JDM1_2411
|
||||
| JDM1_2411 | -43 | 4.5 | AGGAAAGCGTTTTCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bglB | ||||
| Ortholog function: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86) | ||||
| Lactobacillus acidophilus NCFM | LBA0885 | -35 | 4.8 | ATGAAAGCGATTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0941 | -34 | 4 | CTGAAAGCACTTACAG |
| Lactobacillus johnsonii NCC 533 | LJ0194 | -28 | 4.7 | ATGTAAGCGATTGCAA |
| Lactobacillus plantarum WCFS1 | lp_3011 | -43 | 4.5 | AGGAAAGCGTTTTCCA |
| Oenococcus oeni PSU-1 | OEOE_1210 | -93 | 4.5 | ATGGTAGCGATTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1776 | -34 | 4.8 | ATGAAAGCGAATTCAA |
|
Position: -36
Score: 4.7 Sequence: ATGATAGCGATTACAA
Locus tag: JDM1_2434
|
||||
| JDM1_2434 | -36 | 4.7 | ATGATAGCGATTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dhaT | ||||
| Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_2191 | -191 | 4.6 | TTGAAAGCGGTAAAAA |
| Lactobacillus fermentum IFO 3956 | LAF_0741 | -39 | 4.7 | ATGGAAGCGTATTCAA |
| Lactobacillus plantarum WCFS1 | lp_3051 | -36 | 4.7 | ATGATAGCGATTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0029 | -39 | 4.4 | ATGGAATCGTATTCAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0122 | -147 | 4.2 | TTTGTAACGCTTTCAT |
| -55 | 4.1 | CGGTAAGCGTTATCAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0276 | -104 | 4.1 | ATAAAAACGTTTAACT |
| -71 | 4.7 | TTGTAAACGGATACAT | ||
| -15 | 4 | AAGAAGGCGTTTAAAA | ||
|
Position: -85
Score: 4.4 Sequence: TTGTAAGCGATTGAAT
Position: -41
Score: 4.4 Sequence: TTGTAAACGGTTTACA
Locus tag: JDM1_2435
|
||||
| JDM1_2435 | -85 | 4.4 | TTGTAAGCGATTGAAT | |
| -41 | 4.4 | TTGTAAACGGTTTACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhX | ||||
| Ortholog function: Zn conatining alcohol dehydrogenase | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0797 | -31 | 4.6 | ATGTAAGCGCTACCAA |
| Lactobacillus plantarum WCFS1 | lp_3054 | -85 | 4.6 | TTGTAAGCGCTTGAAT |
| -41 | 4.5 | TTGTAAGCGGTTTACA | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0542 | -66 | 4.3 | TTGTAAACGATTCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1748 | -31 | 4.4 | TTGTAAACGATGTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0182 | -75 | 4.8 | TTGCAAACGCTTTCTT |
|
Position: -118
Score: 4.8 Sequence: AAGAAAGCGCTTTTAT
Locus tag: JDM1_2600
|
||||
| JDM1_2600 | -118 | 4.8 | AAGAAAGCGCTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treP | ||||
| Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA1012 | -96 | 4.3 | TTGTGATCGCTTTCAA |
| -29 | 4.8 | ATGAAAACGCTTTATA | ||
| Lactobacillus casei ATCC 334 | LSEI_0631 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0760 | -104 | 4.4 | AAGTAAGCTTTTTCAT |
| -36 | 4.5 | ATGAAAGCGGATACTT | ||
| Lactobacillus plantarum WCFS1 | lp_3240 | -118 | 4.8 | AAGAAAGCGCTTTTAT |
| Lactobacillus plantarum WCFS1 | lp_0264 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00603 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1200 | -105 | 4.4 | TTGTAAACGGTTCAAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1512 | -96 | 4.5 | TTGTAAACAATTTCAT |
| -27 | 4.1 | AAGAAAAGGTTTTCAG | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0507 | -86 | 5.1 | TTGTAACCGTTTACAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0508 | -86 | 5.1 | TTGTAACCGTTTACAT |
| Oenococcus oeni PSU-1 | OEOE_1342 | -96 | 4.5 | TTGAAAACGCTTTATG |
| Oenococcus oeni PSU-1 | OEOE_1341 | -96 | 4.5 | TTGAAAACGCTTTATG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1804 | -199 | 4.6 | TTAGAAACGCTTACAT |
| -56 | 4.7 | TAGCAAGCGCTTACAA | ||
|
Position: -104
Score: 4.3 Sequence: TAGAAACCGCTTATTT
Position: -82
Score: 4.2 Sequence: AATAAAGCGTTTGCAT
Locus tag: JDM1_2738
|
||||
| JDM1_2738 | -104 | 4.3 | TAGAAACCGCTTATTT | |
| -82 | 4.2 | AATAAAGCGTTTGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpF2 | ||||
| Ortholog function: Glycerol uptake facilitator protein | ||||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0058 | -132 | 4.7 | ATAAAAGCGCATTCAT |
| Lactobacillus plantarum WCFS1 | lp_3436 | -104 | 4.3 | TAGAAACCGCTTATTT |
| -82 | 4.6 | AATAAAGCGTTTACAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1170 | -95 | 4.1 | ATAAAAGGGCTTTAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1392 | -292 | 3.9 | TTTCAAGCGCTTCAAT |
| Oenococcus oeni PSU-1 | OEOE_0349 | -104 | 4.3 | TAGAAACCGCTTATTT |
| -82 | 4.5 | AATAAAACGTTTACAT | ||
|
Position: -177
Score: 4.2 Sequence: AATAATACGCTTTCAT
Position: -66
Score: 4.6 Sequence: ATGAAAGCGCTTATCA
Locus tag: JDM1_2762
|
||||
| JDM1_2762 | -177 | 4.2 | AATAATACGCTTTCAT | |
| -66 | 4.6 | ATGAAAGCGCTTATCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacZ | ||||
| Ortholog function: Beta-galactosidase (EC 3.2.1.23) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0780 | -92 | 4.2 | TCGTAATCGGTTTCAT |
| Lactobacillus plantarum WCFS1 | lp_3469 | -177 | 4.2 | AATAATACGCTTTCAT |
| -66 | 4.6 | ATGAAAGCGCTTATCA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1064 | -80 | 4.5 | CTGTAAGCGCTTCCAT |
|
Position: -256
Score: 4.9 Sequence: ATAAAAACGCTTACAA
Locus tag: JDM1_2774
|
||||
| JDM1_2774 | -256 | 4.9 | ATAAAAACGCTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galK | ||||
| Ortholog function: Galactokinase (EC 2.7.1.6) | ||||
| Lactobacillus acidophilus NCFM | LBA1459 | -36 | 4.3 | CTGAAAACGATTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1904 | -98 | 4.7 | ATGAAAACGTTTTATA |
| Lactobacillus fermentum IFO 3956 | LAF_1792 | -99 | 4.1 | ATGTAAGCGCTCTATT |
| Lactobacillus helveticus DPC 4571 | lhv_1501 | -37 | 4.8 | TTGAAAACGATTACAG |
| Lactobacillus johnsonii NCC 533 | LJ0859 | -36 | 5.1 | ATGAAAACGATTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_1662 | -125 | 4.5 | GTGTAATCGTTTTCTT |
| -93 | 4.4 | TTGTAAGCGCTTATTG | ||
|
Position: -43
Score: 5 Sequence: TTGTAAGCGTTTTTAT
Locus tag: JDM1_2775
|
||||
| JDM1_2775 | -43 | 5 | TTGTAAGCGTTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacL | ||||
| Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23) | ||||
| Lactobacillus acidophilus NCFM | LBA1467 | -47 | 5 | ATAAAAGCGTTTTCAA |
| Lactobacillus brevis ATCC 367 | LVIS_2259 | -32 | 4.5 | GTGTAAGCGTTTTATA |
| Lactobacillus fermentum IFO 3956 | LAF_0247 | -48 | 5 | TTGAAACCGTTATCAT |
| Lactobacillus helveticus DPC 4571 | lhv_1549 | -46 | 4.4 | ATAAAAGCTCTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0855 | -45 | 4.4 | ATAAAAGCGTCTTCAA |
| Lactobacillus plantarum WCFS1 | lp_3483 | -43 | 5 | TTGTAAGCGTTTTTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0276 | -53 | 4.4 | ATGAAAGCGCTATACT |
| Lactobacillus sakei subsp. sakei 23K | LSA1711 | -37 | 4.9 | ATGAAACCGTTTTAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0376 | -32 | 4.5 | ATGTAAGCATTTTCTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0205 | -41 | 4.8 | TTGTAAGCGTTTTATA |
|
Position: -49
Score: 4.6 Sequence: ATGAAAGCGGTAACTT
Locus tag: JDM1_2781
|
||||
| JDM1_2781 | -49 | 4.6 | ATGAAAGCGGTAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yghZ | ||||
| Ortholog function: Predicted oxidoreductase, aryl-alcohol dehydrogenase related | ||||
| Lactobacillus plantarum WCFS1 | lp_3489 | -49 | 4.6 | ATGAAAGCGGTAACTT |
| Lactobacillus sakei subsp. sakei 23K | LSA0260 | -45 | 4.5 | ATGTAACCGATTGCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1315 | -77 | 4.8 | AGGTAAGCGTTTACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0112 | -45 | 4.7 | ATGAAAGCGGTATCTT |
|
Position: -160
Score: 4.7 Sequence: TTGACACCGCTTACAA
Locus tag: JDM1_2817
|
||||
| JDM1_2817 | -160 | 4.7 | TTGACACCGCTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: licT | ||||
| Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family | ||||
| Lactobacillus acidophilus NCFM | LBA0724 | -196 | 4.3 | TTTAAAACATTTTCAT |
| -163 | 4.8 | TTGACACCGCTTTCAA | ||
| Lactobacillus johnsonii NCC 533 | LJ0623 | -141 | 4.7 | ATGTAAGCGCTATTAT |
| Lactobacillus plantarum WCFS1 | lp_3529 | -160 | 4.7 | TTGACACCGCTTACAA |
|
Position: -113
Score: 4.4 Sequence: ACGTAAACGTTTACAA
Locus tag: JDM1_2819
|
||||
| JDM1_2819 | -113 | 4.4 | ACGTAAACGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malR3 | ||||
| Ortholog function: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family | ||||
| Lactobacillus plantarum WCFS1 | lp_3531 | -113 | 4.4 | ACGTAAACGTTTACAA |
| -81 | 4.4 | AAGTAAACGTTTACAC | ||
| Lactobacillus reuteri JCM 1112 | LAR_0083 | -74 | 5.3 | TTGAAAACGTTTACAA |
|
Position: -72
Score: 4.7 Sequence: TTGTAAACGTTTACGT
Locus tag: JDM1_2820
|
||||
| JDM1_2820 | -72 | 4.7 | TTGTAAACGTTTACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT2 | ||||
| Ortholog function: Predicted maltose/maltodextrin permease | ||||
| Lactobacillus brevis ATCC 367 | LVIS_2179 | -38 | 4.9 | TTGAAAACGGTTACTT |
| Lactobacillus plantarum WCFS1 | lp_3533 | -104 | 4.6 | GTGTAAACGTTTACTT |
| -72 | 4.7 | TTGTAAACGTTTACGT | ||
| Oenococcus oeni PSU-1 | OEOE_0041 | -124 | 4.2 | CAGTAAACGTTTACTA |
| -92 | 4.6 | TTGTAAACGTTTACTG | ||
| -57 | 4.9 | TTGTAAACGTTTACTT | ||
|
Position: -124
Score: 4.3 Sequence: ATGAAAGCGTTTTATC
Position: -63
Score: 4.6 Sequence: TTGAAAGGGCTTTCTA
Locus tag: JDM1_2842
|
||||
| JDM1_2842 | -124 | 4.3 | ATGAAAGCGTTTTATC | |
| -63 | 4.6 | TTGAAAGGGCTTTCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araE | ||||
| Ortholog function: Arabinose-proton symporter | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1743 | -79 | 4.4 | TTGAAAGGGCTTTCGA |
| Lactobacillus fermentum IFO 3956 | LAF_1555 | -100 | 4.3 | TGGTAAGCGTTTTATA |
| -76 | 4.4 | GTGAAATCGCTTACAG | ||
| Lactobacillus plantarum WCFS1 | lp_3557 | -63 | 4.6 | TTGAAAGGGCTTTCTA |
| Lactobacillus reuteri JCM 1112 | LAR_0467 | -63 | 4.7 | ATGAAAGCGCGTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1860 | -78 | 4.7 | TTGAAACCGTTTTATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0853 | -104 | 5 | TTGTAAGCGTTTCCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0162 | -48 | 4.9 | ATGAATACGCTTTCAA |
|
Position: -190
Score: 5.1 Sequence: AAGAAAGCGTTTACAA
Locus tag: JDM1_2850
|
||||
| JDM1_2850 | -190 | 5.1 | AAGAAAGCGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: LVIS_0439 | ||||
| Ortholog function: Sugar phosphate isomerase/epimerase | ||||
| Lactobacillus plantarum WCFS1 | lp_3566 | -190 | 5.1 | AAGAAAGCGTTTACAA |
|
Position: -77
Score: 4.6 Sequence: ATGTAAGCGTTTGCTA
Locus tag: JDM1_2870
|
||||
| JDM1_2870 | -77 | 4.6 | ATGTAAGCGTTTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxB | ||||
| Ortholog function: Pyruvate oxidase (EC 1.2.3.3) | ||||
| Lactobacillus plantarum WCFS1 | lp_3589 | -77 | 4.3 | ATGTAAGCGTTTGCTG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0977 | -45 | 5.4 | ATGAAAGCGCTTACAA |
|
Position: -33
Score: 4.9 Sequence: ATGAAAACGCTTACCA
Locus tag: JDM1_2877
|
||||
| JDM1_2877 | -33 | 4.9 | ATGAAAACGCTTACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaY | ||||
| Ortholog function: Predicted L-rhamnose permease RhaY | ||||
| Lactobacillus plantarum WCFS1 | lp_3596 | -33 | 4.7 | ATGAAACCGCTTACCA |
| Lactobacillus rhamnosus GG | LGG_02691 | -64 | 4.8 | ATGTAAGCGGTTAAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1751 | -73 | 4.6 | TTGAAAACGGTTAATA |
|
Position: -279
Score: 4.9 Sequence: TTGTAAGCGCATACAT
Locus tag: JDM1_2879
|
||||
| JDM1_2879 | -279 | 4.9 | TTGTAAGCGCATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucR | ||||
| Ortholog function: L-fucose utilization transcriptional regulator FucR, DeoR family | ||||
| Lactobacillus plantarum WCFS1 | lp_3598 | -279 | 4.9 | TTGTAAGCGCATACAT |
| -189 | 3.9 | TAGTAATCGGTAAAAA | ||
| Lactobacillus rhamnosus GG | LGG_02680 | -58 | 4.5 | TTGCAAGCGCTTACGA |
|
Position: -107
Score: 4.6 Sequence: ATGAAACCGATTCCAA
Position: -76
Score: 5.1 Sequence: TTGAAAGCGCTTAAAT
Locus tag: JDM1_2890
|
||||
| JDM1_2890 | -107 | 4.6 | ATGAAACCGATTCCAA | |
| -76 | 5.1 | TTGAAAGCGCTTAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: simA | ||||
| Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) | ||||
| Lactobacillus acidophilus NCFM | LBA1689 | -100 | 4.5 | GTGAAAGCGAATACAT |
| Lactobacillus casei ATCC 334 | LSEI_0369 | -105 | 4.9 | TTGAAACCGCTTGCAT |
| Lactobacillus johnsonii NCC 533 | LJ0635 | -127 | 5.2 | TTGAAAACGCTTTCTT |
|
Position: -48
Score: 5.2 Sequence: ATGAAAGCGCTTTAAT
Locus tag: JDM1_2894
|
||||
| JDM1_2894 | -48 | 5.2 | ATGAAAGCGCTTTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: simA | ||||
| Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) | ||||
| Lactobacillus acidophilus NCFM | LBA1689 | -100 | 4.5 | GTGAAAGCGAATACAT |
| Lactobacillus casei ATCC 334 | LSEI_0369 | -105 | 4.9 | TTGAAACCGCTTGCAT |
| Lactobacillus johnsonii NCC 533 | LJ0635 | -127 | 5.2 | TTGAAAACGCTTTCTT |
|
Position: -73
Score: 4.5 Sequence: ATGTAAGGGGTTACAT
Locus tag: JDM1_2897
|
||||
| JDM1_2897 | -73 | 4.5 | ATGTAAGGGGTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nplT | ||||
| Ortholog function: Neopullulanase (EC 3.2.1.135) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0739 | -96 | 4.6 | GTGAAAACGGTTACTT |
| Lactobacillus plantarum WCFS1 | lp_3627 | -73 | 4.5 | ATGTAAGGGGTTACAT |
| Lactobacillus reuteri JCM 1112 | LAR_0078 | -130 | 4.9 | ATGTAATCGTTTACAT |
|
Position: -49
Score: 4.7 Sequence: TAGAAAGCGGTTACTA
Locus tag: JDM1_2913
|
||||
| JDM1_2913 | -49 | 4.7 | TAGAAAGCGGTTACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msmX | ||||
| Ortholog function: Multiple sugar ABC transporter, permease protein 2 | ||||
| Lactobacillus plantarum WCFS1 | lp_3644 | -187 | 4.3 | TAATAAACGTTTTAAT |
| -49 | 4.4 | GAGAAAGCGGTTACTA | ||
|
Position: -61
Score: 4.4 Sequence: ATGTATGCGCTTTCGT
Locus tag: JDM1_2925
|
||||
| JDM1_2925 | -61 | 4.4 | ATGTATGCGCTTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sorD | ||||
| Ortholog function: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) | ||||
| Lactobacillus plantarum WCFS1 | lp_3657 | -61 | 4.4 | ATGTATGCGCTTTCGT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1894 | -63 | 4.3 | TTGTAACCGTTAACAC |
|
Position: -72
Score: 4.9 Sequence: ATTAAAACGTTTTCAT
Locus tag: JDM1_2928
|
||||
| JDM1_2928 | -72 | 4.9 | ATTAAAACGTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsK | ||||
| Ortholog function: Ribokinase (EC 2.7.1.15) | ||||
| Lactobacillus acidophilus NCFM | LBA0587 | -61 | 4.1 | TTGGATGCGTTTTTTT |
| Lactobacillus plantarum WCFS1 | lp_3660 | -72 | 4.9 | ATTAAAACGTTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1699 | -65 | 4.9 | ATTAAAACGTTTTCAT |