Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus plantarum JDM1

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum JDM1
Orthologous TF(s) JDM1_1890
Regulated genes 61
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum JDM1
Locus tag Position Score Sequence
Position: -96
Score: 4.4
Sequence: ATGAAAGCGTAGTCAA
Locus tag: JDM1_0070
JDM1_0070 -96 4.4 ATGAAAGCGTAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxjF
Ortholog function: Predicted short-chain alcohol dehydrogenase
Lactobacillus casei ATCC 334 LSEI_0715 -98 4.7 TTGAAAGCGCTATCGT
Lactobacillus plantarum WCFS1 lp_0060 -96 4.4 ATGAAAGCGTAGTCAA
Lactobacillus rhamnosus GG LGG_00704 -106 4.7 TTGAAAGCGCTATCGT
Position: -193
Score: 4.2
Sequence: ATGTAGCCGGTTACAT
Locus tag: JDM1_0144
JDM1_0144 -193 4.2 ATGTAGCCGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lhv_0924
Ortholog function: Predicted transcriptional regulator, GntR family
Lactobacillus helveticus DPC 4571 lhv_0924 -236 5.2 TTGTAAGCGATTTCAA
-149 4.7 TAGGAACCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0152 -193 4.2 ATGTAGCCGGTTACAT
Lactobacillus rhamnosus GG LGG_02679 -170 4.7 TTAAATGCGCTTTCAT
Oenococcus oeni PSU-1 OEOE_1211 -167 4.4 ATGAAATCGCTACCAT
-115 4 ATGTAAACTCTTTTTT
Pediococcus pentosaceus ATCC 25745 PEPE_1777 -141 4.7 TTGAATTCGCTTTCAT
Position: -58
Score: 5
Sequence: TTGAAAGCGGATTCAT
Locus tag: JDM1_0157
JDM1_0157 -58 5 TTGAAAGCGGATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaK
Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Lactobacillus acidophilus NCFM LBA1433 -35 4.7 TTGTAAGCGATTGCAT
Lactobacillus plantarum WCFS1 lp_0168 -58 4.6 TTGAAATCGGATTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1633 -64 5 TTGAAAGCGTTTATAT
Pediococcus pentosaceus ATCC 25745 PEPE_1662 -63 4.8 TTGTAATCGCTTTCTA
Position: -101
Score: 4
Sequence: CTGTTAACGTTAACAT
Locus tag: JDM1_0164
JDM1_0164 -101 4 CTGTTAACGTTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malX
Ortholog function: Maltose/maltodextrin ABC transporter, substrate-binding protein
Lactobacillus plantarum WCFS1 lp_0175 -101 4 CTGTTAACGTTAACAT
Position: -212
Score: 4.3
Sequence: ATAAAACCGCTTACAC
Position: -157
Score: 4.1
Sequence: ATGTTAGCGTTTCAAA
Position: -58
Score: 4.1
Sequence: TGTAAAGCGCTTGCAT
Locus tag: JDM1_0175
JDM1_0175 -212 4.3 ATAAAACCGCTTACAC
-157 4.1 ATGTTAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0401 -219 4.7 ATGTAAGCGTTATCTT
-30 4.9 ATAAAAGCGTTTACAT
Lactobacillus fermentum IFO 3956 LAF_1578 -126 4.4 TTGGCAGCGATTTCAA
-57 4.5 AGAAAAGCGCTTACAA
Lactobacillus johnsonii NCC 533 LJ0519 -214 4.6 ATGTAAACGCATTCTT
-37 4.4 TTTAAAACGCTTACAC
Lactobacillus plantarum WCFS1 lp_0185 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1792 -183 4.2 ATGTAAACGTTTGATA
-54 4.5 TGAAAAGCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0066 -52 4.2 CATTAAGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0518 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Position: -59
Score: 4.6
Sequence: GTGTAAGCGGTTTTAT
Locus tag: JDM1_0176
JDM1_0176 -59 4.6 GTGTAAGCGGTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrB
Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Lactobacillus acidophilus NCFM LBA0400 -220 4.9 ATGTAAACGCTTTTAT
-188 4.5 ATGATAACGTATTCAA
-31 4.6 AAGATAACGCTTACAT
Lactobacillus johnsonii NCC 533 LJ0518 -214 4.7 GTGTAAGCGTTTTAAA
-184 4.3 ATGATAGCGTATTCTA
-37 4.6 AAGAATGCGTTTACAT
Lactobacillus plantarum WCFS1 lp_0187 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Lactobacillus sakei subsp. sakei 23K LSA1793 -188 4.5 TTGTAAACGCTTTTCA
-163 4.3 ATACAACCGTTTACAT
-59 4.1 TATCAAACGTTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0065 -121 4.1 ATTTAACCGCTTTTTT
-33 4.5 AAGAATACGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0519 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Position: -63
Score: 4.3
Sequence: TTGAAACCGCTTACCC
Locus tag: JDM1_0214
JDM1_0214 -63 4.3 TTGAAACCGCTTACCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2888 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus plantarum WCFS1 lp_0230 -63 4.8 TTGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02912 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1620 -56 4.2 CAGTAAACGTTATCAT
Position: -37
Score: 4.8
Sequence: ATGATACCGCTTTCAA
Locus tag: JDM1_0223
JDM1_0223 -37 4.8 ATGATACCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Lactobacillus casei ATCC 334 LSEI_0748 -108 4 ATGAAAACGATGAAAA
Lactobacillus plantarum WCFS1 lp_0242 -37 4.8 ATGATACCGCTTTCAA
Lactobacillus reuteri JCM 1112 LAR_0192 -74 4.6 CTAAAAACGCTTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1571 -62 4.5 TTGTGAACGTTTTCAT
Position: -29
Score: 4.7
Sequence: ATGAAAACGATAACAA
Locus tag: JDM1_0234
JDM1_0234 -29 4.7 ATGAAAACGATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -46
Score: 5
Sequence: ATGATAGCGTTTTCAT
Locus tag: JDM1_0332
JDM1_0332 -46 5 ATGATAGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus plantarum WCFS1 lp_0370 -46 5 ATGATAGCGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1623 -84 4.2 TTAAAAACGATTTATA
-51 5 TAGAAAGCGCTTTCTT
Position: -78
Score: 5.1
Sequence: TTGTAAGCGCTTTTAA
Locus tag: JDM1_0369
JDM1_0369 -78 5.1 TTGTAAGCGCTTTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuC
Ortholog function: PTS system, Oligo-beta-mannoside permease IIC component
Lactobacillus plantarum WCFS1 lp_0439 -78 5.1 TTGTAAGCGCTTTTAA
Position: -218
Score: 3.9
Sequence: AAATAATCGTTTTTAA
Position: 1
Score: 4
Sequence: TGGTAAGCATTATCAT
Locus tag: JDM1_0523
JDM1_0523 -218 3.9 AAATAATCGTTTTTAA
1 4 TGGTAAGCATTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -40
Score: 4.4
Sequence: TTGTAAGCACTAACAA
Locus tag: JDM1_0633
JDM1_0633 -40 4.4 TTGTAAGCACTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgm
Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7)
Lactobacillus casei ATCC 334 LSEI_0949 -102 3.9 TTGAGCGCGTTTTCAA
Lactobacillus johnsonii NCC 533 LJ0862 -121 4.3 ATAAAAGCGTTTAATA
Lactobacillus plantarum WCFS1 lp_0764 -40 4.4 TTGTAAGCACTAACAA
Lactobacillus rhamnosus GG LGG_00921 -100 3.9 TTGAGCGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0446 -77 4.1 AAAAAAACGCTTTCTG
Position: -326
Score: 4.8
Sequence: TTGACAACGCTTACAA
Locus tag: JDM1_0690
JDM1_0690 -326 4.8 TTGACAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956 LAF_0383 -179 4.9 TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112 LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0428 -174 4.8 TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1300 -200 4.3 TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Position: -86
Score: 4.9
Sequence: ATAAAAGCGTTTACAT
Locus tag: JDM1_0707
JDM1_0707 -86 4.9 ATAAAAGCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus acidophilus NCFM LBA1974 -110 4.4 GAAAAAGCGGTTTCAT
-78 4 AAGATAGCGTTTTGAA
Lactobacillus brevis ATCC 367 LVIS_0313 -152 4.3 TTGAAAGCGTGAACAA
Lactobacillus casei ATCC 334 LSEI_1784 -149 4 GTTTAAGCGTTTTATA
-92 4.4 ATGAAAGGGCTTGCAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_2034 -76 4 TTGATAGCACTTGCAA
Lactobacillus johnsonii NCC 533 LJ1853 -79 4.1 CAGCAACCGCTTTCAA
Lactobacillus plantarum WCFS1 lp_0849 -390 4.3 ATGTAAGCGTCATCAT
-86 4.9 ATAAAAGCGTTTACAT
Lactobacillus rhamnosus GG LGG_01836 -136 4.6 ATTAAAGCGCTTTCCT
-89 4.1 GTGAAAGGGTTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1830 -71 4.1 TTTGTAACGCTTACAA
Position: -147
Score: 4.5
Sequence: GAGAAAACGCTATCAT
Locus tag: JDM1_0754
JDM1_0754 -147 4.5 GAGAAAACGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: licT
Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family
Lactobacillus acidophilus NCFM LBA1708 -131 5.1 ATGAAAGCGTTATCAT
Lactobacillus johnsonii NCC 533 LJ0542 -126 4.6 AAGAAAGCGATATCAT
Lactobacillus plantarum WCFS1 lp_0904 -147 4.5 GAGAAAACGCTATCAT
Position: -61
Score: 4.2
Sequence: TTGATAAGGGTTTCAT
Locus tag: JDM1_0760
JDM1_0760 -61 4.2 TTGATAAGGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaA
Ortholog function: Pantothenate kinase (EC 2.7.1.33)
Lactobacillus fermentum IFO 3956 LAF_1646 -35 4 ATGTAAGGGCTATCCA
Lactobacillus plantarum WCFS1 lp_0913 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus reuteri JCM 1112 LAR_1512 -44 4.6 GAGTAACCGTTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0138 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1538 -75 4.2 TTGAAAGCGTAATATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1881 -107 4.1 TTGTATACTGTTTCAT
Position: -135
Score: 4
Sequence: ATGAAAGGGCTTGTAT
Locus tag: JDM1_1076
JDM1_1076 -135 4 ATGAAAGGGCTTGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: Phosphotransferase system, HPr-related protein
Lactobacillus acidophilus NCFM LBA0639 -111 4.4 ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0512 -108 4.7 ATGAAAACATTTACAA
Lactobacillus helveticus DPC 4571 lhv_0686 -109 4.4 ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533 LJ0816 -109 4.6 ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1 lp_1273 -135 4 ATGAAAGGGCTTGTAT
Lactobacillus reuteri JCM 1112 LAR_1256 -102 4 TATTTAACGCTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0388 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1780 -157 5.3 ATGTAAACGTTTTCAT
-63 4.7 TTGTAAGCGCTTTGAT
Pediococcus pentosaceus ATCC 25745 PEPE_0609 -127 4 ATGTAAGGGCTTGCTT
Position: -186
Score: 4.5
Sequence: ATGAAAGGGCTTTTAT
Position: -138
Score: 4.3
Sequence: ATGAAAACGGTTATAC
Locus tag: JDM1_1225
JDM1_1225 -186 4.5 ATGAAAGGGCTTTTAT
-138 4.3 ATGAAAACGGTTATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufC
Ortholog function: Iron-sulfur cluster assembly ATPase protein
Lactobacillus plantarum WCFS1 lp_1468 -186 4.5 ATGAAAGGGCTTTTAT
-138 4.3 ATGAAAACGGTTATAC
Lactobacillus sakei subsp. sakei 23K LSA1113 -74 3.9 TGAAAAGCGTTCTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1881 -181 4.2 ATGTAAGCGTTATTCT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2038 29 4.4 GAGAAAACGCTTAAAA
Position: -6
Score: 4.3
Sequence: TTGAAAGTGCTTACAG
Locus tag: JDM1_1752
JDM1_1752 -6 4.3 TTGAAAGTGCTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family
Lactobacillus acidophilus NCFM LBA1779 -37 4.2 GAGAAAGCGAATACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1889 -164 4 GAGAAAGCCTTTACAA
Lactobacillus helveticus DPC 4571 lhv_1846 12 4.3 GAGAAAGCGGATACAA
Lactobacillus johnsonii NCC 533 LJ0570 -40 4.1 CTGAAAGCGTTTATCA
Lactobacillus plantarum WCFS1 lp_2095 -6 4.3 TTGAAAGTGCTTACAG
Lactobacillus sakei subsp. sakei 23K LSA1048 -130 4 ATGAAAACCTTTACAC
-40 4.3 TTGTAAACGATGACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1166 -6 4.3 ATGAAAGTGCTTACAG
Position: -118
Score: 4.1
Sequence: TTGGAAGGGCTTGCAA
Position: -67
Score: 4.5
Sequence: ATGAAAACGATTACGA
Locus tag: JDM1_1805
JDM1_1805 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -121
Score: 5.2
Sequence: ATGAAAGCGATTTCAA
Position: -51
Score: 4
Sequence: ATGAAAACGGATGAAA
Locus tag: JDM1_1890
JDM1_1890 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -228
Score: 3.9
Sequence: TTTCATCCGTTTTCAT
Position: -158
Score: 5.2
Sequence: TTGAAATCGCTTTCAT
Locus tag: JDM1_1891
JDM1_1891 -228 3.9 TTTCATCCGTTTTCAT
-158 5.2 TTGAAATCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -77
Score: 3.8
Sequence: GAGGAAGCGCTTTTCA
Locus tag: JDM1_2014
JDM1_2014 -77 3.8 GAGGAAGCGCTTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Lactobacillus acidophilus NCFM LBA0752 -90 4.3 GTGAATGCGCTTATAA
Lactobacillus casei ATCC 334 LSEI_1126 -62 4 ATGAAACCACTCTCAT
Lactobacillus fermentum IFO 3956 LAF_1686 -63 4.4 GAGTTAGCGCTTTCAT
Lactobacillus fermentum IFO 3956 LAF_0411 -66 4.2 ATGGAAACGTTATCGT
Lactobacillus helveticus DPC 4571 lhv_0795 -14 4 TAGGAAGCGGATTTAT
Lactobacillus plantarum WCFS1 lp_2502 -77 3.8 GAGGAAGCGCTTTTCA
Lactobacillus reuteri JCM 1112 LAR_0415 -69 4.4 TTGAAACCGACTTCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0355 -37 5 TTGTAACCGATTTCAT
Oenococcus oeni PSU-1 OEOE_0636 -118 3.9 TTGGAAGCTATTCCAA
Position: -200
Score: 4.3
Sequence: TTGTAACCGTTTTAGT
Locus tag: JDM1_2048
JDM1_2048 -200 4.3 TTGTAACCGTTTTAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcaD
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus acidophilus NCFM LBA1401 -52 4.4 ATGAAAGAGGTTACAA
Lactobacillus plantarum WCFS1 lp_2544 -200 4.3 TTGTAACCGTTTTAGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0137 -56 3.8 GTGAAAACGTTCTATA
Pediococcus pentosaceus ATCC 25745 PEPE_1619 -81 4.7 TTATAAGCGTTTTAAT
-66 4.1 TTGTAAGCGGTTCACA
Position: -41
Score: 4.9
Sequence: ATGAAAACGTATACAA
Locus tag: JDM1_2109
JDM1_2109 -41 4.9 ATGAAAACGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus plantarum WCFS1 lp_2629 -41 4.1 ACGAAAACGTATACAA
Lactobacillus sakei subsp. sakei 23K LSA1188 -89 4.8 TTGTAATCGATTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1372 -53 4.6 AAGAAAACGTTTGCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1252 -38 4.6 ACGAAAACGTTTTCAA
Position: -32
Score: 4.9
Sequence: ATGTAATCGTTTACAT
Locus tag: JDM1_2211
JDM1_2211 -32 4.9 ATGTAATCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nplT
Ortholog function: Neopullulanase (EC 3.2.1.135)
Lactobacillus acidophilus NCFM LBA1871 -49 5 TTGAAAACGGTTTCTT
Lactobacillus helveticus DPC 4571 lhv_2001 -34 4.3 TTGAAAACGGTTTCCC
Lactobacillus johnsonii NCC 533 LJ0212 -53 5 TTGTAAGCGCTTATAA
Lactobacillus plantarum WCFS1 lp_2757 -32 4.9 ATGTAATCGTTTACAT
Lactobacillus reuteri JCM 1112 LAR_1507 -89 4.2 GTGCAAGCGGTTGCAA
-52 4.6 ATGTAAGCGTAATCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1295 -76 4.3 AAGGAAGCGGTAACAA
Position: -68
Score: 4.7
Sequence: ATGAAAGCGGTTTATT
Locus tag: JDM1_2232
JDM1_2232 -68 4.7 ATGAAAGCGGTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pts20B
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Lactobacillus plantarum WCFS1 lp_2781 -68 4.7 ATGAAAGCGGTTTATT
Oenococcus oeni PSU-1 OEOE_0338 -70 4.8 ATGAAAGCGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0281 -58 4.5 TCGTAAGCGGTTTCAT
Position: -145
Score: 4.3
Sequence: TTGATTTCGCTTTCAT
Locus tag: JDM1_2345
JDM1_2345 -145 4.3 TTGATTTCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -99
Score: 4.8
Sequence: ATGATAGCGATTTCAA
Locus tag: JDM1_2377
JDM1_2377 -99 4.8 ATGATAGCGATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgI
Ortholog function: Putative NAD(P)H nitroreductase
Lactobacillus plantarum WCFS1 lp_2968 -99 4.8 ATGATAGCGATTTCAA
Position: -43
Score: 4.5
Sequence: AGGAAAGCGTTTTCCA
Locus tag: JDM1_2411
JDM1_2411 -43 4.5 AGGAAAGCGTTTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglB
Ortholog function: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
Lactobacillus acidophilus NCFM LBA0885 -35 4.8 ATGAAAGCGATTACAG
Lactobacillus helveticus DPC 4571 lhv_0941 -34 4 CTGAAAGCACTTACAG
Lactobacillus johnsonii NCC 533 LJ0194 -28 4.7 ATGTAAGCGATTGCAA
Lactobacillus plantarum WCFS1 lp_3011 -43 4.5 AGGAAAGCGTTTTCCA
Oenococcus oeni PSU-1 OEOE_1210 -93 4.5 ATGGTAGCGATTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1776 -34 4.8 ATGAAAGCGAATTCAA
Position: -36
Score: 4.7
Sequence: ATGATAGCGATTACAA
Locus tag: JDM1_2434
JDM1_2434 -36 4.7 ATGATAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus brevis ATCC 367 LVIS_2191 -191 4.6 TTGAAAGCGGTAAAAA
Lactobacillus fermentum IFO 3956 LAF_0741 -39 4.7 ATGGAAGCGTATTCAA
Lactobacillus plantarum WCFS1 lp_3051 -36 4.7 ATGATAGCGATTACAA
Lactobacillus reuteri JCM 1112 LAR_0029 -39 4.4 ATGGAATCGTATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -147 4.2 TTTGTAACGCTTTCAT
-55 4.1 CGGTAAGCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0276 -104 4.1 ATAAAAACGTTTAACT
-71 4.7 TTGTAAACGGATACAT
-15 4 AAGAAGGCGTTTAAAA
Position: -85
Score: 4.4
Sequence: TTGTAAGCGATTGAAT
Position: -41
Score: 4.4
Sequence: TTGTAAACGGTTTACA
Locus tag: JDM1_2435
JDM1_2435 -85 4.4 TTGTAAGCGATTGAAT
-41 4.4 TTGTAAACGGTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhX
Ortholog function: Zn conatining alcohol dehydrogenase
Lactobacillus fermentum IFO 3956 LAF_0797 -31 4.6 ATGTAAGCGCTACCAA
Lactobacillus plantarum WCFS1 lp_3054 -85 4.6 TTGTAAGCGCTTGAAT
-41 4.5 TTGTAAGCGGTTTACA
Lactobacillus sakei subsp. sakei 23K LSA0542 -66 4.3 TTGTAAACGATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1748 -31 4.4 TTGTAAACGATGTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0182 -75 4.8 TTGCAAACGCTTTCTT
Position: -118
Score: 4.8
Sequence: AAGAAAGCGCTTTTAT
Locus tag: JDM1_2600
JDM1_2600 -118 4.8 AAGAAAGCGCTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA1012 -96 4.3 TTGTGATCGCTTTCAA
-29 4.8 ATGAAAACGCTTTATA
Lactobacillus casei ATCC 334 LSEI_0631 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0760 -104 4.4 AAGTAAGCTTTTTCAT
-36 4.5 ATGAAAGCGGATACTT
Lactobacillus plantarum WCFS1 lp_3240 -118 4.8 AAGAAAGCGCTTTTAT
Lactobacillus plantarum WCFS1 lp_0264 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00603 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1200 -105 4.4 TTGTAAACGGTTCAAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1512 -96 4.5 TTGTAAACAATTTCAT
-27 4.1 AAGAAAAGGTTTTCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0507 -86 5.1 TTGTAACCGTTTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0508 -86 5.1 TTGTAACCGTTTACAT
Oenococcus oeni PSU-1 OEOE_1342 -96 4.5 TTGAAAACGCTTTATG
Oenococcus oeni PSU-1 OEOE_1341 -96 4.5 TTGAAAACGCTTTATG
Pediococcus pentosaceus ATCC 25745 PEPE_1804 -199 4.6 TTAGAAACGCTTACAT
-56 4.7 TAGCAAGCGCTTACAA
Position: -104
Score: 4.3
Sequence: TAGAAACCGCTTATTT
Position: -82
Score: 4.2
Sequence: AATAAAGCGTTTGCAT
Locus tag: JDM1_2738
JDM1_2738 -104 4.3 TAGAAACCGCTTATTT
-82 4.2 AATAAAGCGTTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF2
Ortholog function: Glycerol uptake facilitator protein
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0058 -132 4.7 ATAAAAGCGCATTCAT
Lactobacillus plantarum WCFS1 lp_3436 -104 4.3 TAGAAACCGCTTATTT
-82 4.6 AATAAAGCGTTTACAT
Lactobacillus sakei subsp. sakei 23K LSA1170 -95 4.1 ATAAAAGGGCTTTAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1392 -292 3.9 TTTCAAGCGCTTCAAT
Oenococcus oeni PSU-1 OEOE_0349 -104 4.3 TAGAAACCGCTTATTT
-82 4.5 AATAAAACGTTTACAT
Position: -177
Score: 4.2
Sequence: AATAATACGCTTTCAT
Position: -66
Score: 4.6
Sequence: ATGAAAGCGCTTATCA
Locus tag: JDM1_2762
JDM1_2762 -177 4.2 AATAATACGCTTTCAT
-66 4.6 ATGAAAGCGCTTATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: Beta-galactosidase (EC 3.2.1.23)
Lactobacillus fermentum IFO 3956 LAF_0780 -92 4.2 TCGTAATCGGTTTCAT
Lactobacillus plantarum WCFS1 lp_3469 -177 4.2 AATAATACGCTTTCAT
-66 4.6 ATGAAAGCGCTTATCA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1064 -80 4.5 CTGTAAGCGCTTCCAT
Position: -256
Score: 4.9
Sequence: ATAAAAACGCTTACAA
Locus tag: JDM1_2774
JDM1_2774 -256 4.9 ATAAAAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus acidophilus NCFM LBA1459 -36 4.3 CTGAAAACGATTACAG
Lactobacillus brevis ATCC 367 LVIS_1904 -98 4.7 ATGAAAACGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_1792 -99 4.1 ATGTAAGCGCTCTATT
Lactobacillus helveticus DPC 4571 lhv_1501 -37 4.8 TTGAAAACGATTACAG
Lactobacillus johnsonii NCC 533 LJ0859 -36 5.1 ATGAAAACGATTACAA
Lactobacillus reuteri JCM 1112 LAR_1662 -125 4.5 GTGTAATCGTTTTCTT
-93 4.4 TTGTAAGCGCTTATTG
Position: -43
Score: 5
Sequence: TTGTAAGCGTTTTTAT
Locus tag: JDM1_2775
JDM1_2775 -43 5 TTGTAAGCGTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Position: -49
Score: 4.6
Sequence: ATGAAAGCGGTAACTT
Locus tag: JDM1_2781
JDM1_2781 -49 4.6 ATGAAAGCGGTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yghZ
Ortholog function: Predicted oxidoreductase, aryl-alcohol dehydrogenase related
Lactobacillus plantarum WCFS1 lp_3489 -49 4.6 ATGAAAGCGGTAACTT
Lactobacillus sakei subsp. sakei 23K LSA0260 -45 4.5 ATGTAACCGATTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1315 -77 4.8 AGGTAAGCGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0112 -45 4.7 ATGAAAGCGGTATCTT
Position: -160
Score: 4.7
Sequence: TTGACACCGCTTACAA
Locus tag: JDM1_2817
JDM1_2817 -160 4.7 TTGACACCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: licT
Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family
Lactobacillus acidophilus NCFM LBA0724 -196 4.3 TTTAAAACATTTTCAT
-163 4.8 TTGACACCGCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0623 -141 4.7 ATGTAAGCGCTATTAT
Lactobacillus plantarum WCFS1 lp_3529 -160 4.7 TTGACACCGCTTACAA
Position: -113
Score: 4.4
Sequence: ACGTAAACGTTTACAA
Locus tag: JDM1_2819
JDM1_2819 -113 4.4 ACGTAAACGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malR3
Ortholog function: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
Lactobacillus plantarum WCFS1 lp_3531 -113 4.4 ACGTAAACGTTTACAA
-81 4.4 AAGTAAACGTTTACAC
Lactobacillus reuteri JCM 1112 LAR_0083 -74 5.3 TTGAAAACGTTTACAA
Position: -72
Score: 4.7
Sequence: TTGTAAACGTTTACGT
Locus tag: JDM1_2820
JDM1_2820 -72 4.7 TTGTAAACGTTTACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT2
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus brevis ATCC 367 LVIS_2179 -38 4.9 TTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1 lp_3533 -104 4.6 GTGTAAACGTTTACTT
-72 4.7 TTGTAAACGTTTACGT
Oenococcus oeni PSU-1 OEOE_0041 -124 4.2 CAGTAAACGTTTACTA
-92 4.6 TTGTAAACGTTTACTG
-57 4.9 TTGTAAACGTTTACTT
Position: -124
Score: 4.3
Sequence: ATGAAAGCGTTTTATC
Position: -63
Score: 4.6
Sequence: TTGAAAGGGCTTTCTA
Locus tag: JDM1_2842
JDM1_2842 -124 4.3 ATGAAAGCGTTTTATC
-63 4.6 TTGAAAGGGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Lactobacillus brevis ATCC 367 LVIS_1743 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1555 -100 4.3 TGGTAAGCGTTTTATA
-76 4.4 GTGAAATCGCTTACAG
Lactobacillus plantarum WCFS1 lp_3557 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0467 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1860 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0853 -104 5 TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0162 -48 4.9 ATGAATACGCTTTCAA
Position: -190
Score: 5.1
Sequence: AAGAAAGCGTTTACAA
Locus tag: JDM1_2850
JDM1_2850 -190 5.1 AAGAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: LVIS_0439
Ortholog function: Sugar phosphate isomerase/epimerase
Lactobacillus plantarum WCFS1 lp_3566 -190 5.1 AAGAAAGCGTTTACAA
Position: -77
Score: 4.6
Sequence: ATGTAAGCGTTTGCTA
Locus tag: JDM1_2870
JDM1_2870 -77 4.6 ATGTAAGCGTTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus plantarum WCFS1 lp_3589 -77 4.3 ATGTAAGCGTTTGCTG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0977 -45 5.4 ATGAAAGCGCTTACAA
Position: -33
Score: 4.9
Sequence: ATGAAAACGCTTACCA
Locus tag: JDM1_2877
JDM1_2877 -33 4.9 ATGAAAACGCTTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaY
Ortholog function: Predicted L-rhamnose permease RhaY
Lactobacillus plantarum WCFS1 lp_3596 -33 4.7 ATGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02691 -64 4.8 ATGTAAGCGGTTAAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1751 -73 4.6 TTGAAAACGGTTAATA
Position: -279
Score: 4.9
Sequence: TTGTAAGCGCATACAT
Locus tag: JDM1_2879
JDM1_2879 -279 4.9 TTGTAAGCGCATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucR
Ortholog function: L-fucose utilization transcriptional regulator FucR, DeoR family
Lactobacillus plantarum WCFS1 lp_3598 -279 4.9 TTGTAAGCGCATACAT
-189 3.9 TAGTAATCGGTAAAAA
Lactobacillus rhamnosus GG LGG_02680 -58 4.5 TTGCAAGCGCTTACGA
Position: -107
Score: 4.6
Sequence: ATGAAACCGATTCCAA
Position: -76
Score: 5.1
Sequence: TTGAAAGCGCTTAAAT
Locus tag: JDM1_2890
JDM1_2890 -107 4.6 ATGAAACCGATTCCAA
-76 5.1 TTGAAAGCGCTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: simA
Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Lactobacillus acidophilus NCFM LBA1689 -100 4.5 GTGAAAGCGAATACAT
Lactobacillus casei ATCC 334 LSEI_0369 -105 4.9 TTGAAACCGCTTGCAT
Lactobacillus johnsonii NCC 533 LJ0635 -127 5.2 TTGAAAACGCTTTCTT
Position: -48
Score: 5.2
Sequence: ATGAAAGCGCTTTAAT
Locus tag: JDM1_2894
JDM1_2894 -48 5.2 ATGAAAGCGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: simA
Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Lactobacillus acidophilus NCFM LBA1689 -100 4.5 GTGAAAGCGAATACAT
Lactobacillus casei ATCC 334 LSEI_0369 -105 4.9 TTGAAACCGCTTGCAT
Lactobacillus johnsonii NCC 533 LJ0635 -127 5.2 TTGAAAACGCTTTCTT
Position: -73
Score: 4.5
Sequence: ATGTAAGGGGTTACAT
Locus tag: JDM1_2897
JDM1_2897 -73 4.5 ATGTAAGGGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nplT
Ortholog function: Neopullulanase (EC 3.2.1.135)
Lactobacillus fermentum IFO 3956 LAF_0739 -96 4.6 GTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1 lp_3627 -73 4.5 ATGTAAGGGGTTACAT
Lactobacillus reuteri JCM 1112 LAR_0078 -130 4.9 ATGTAATCGTTTACAT
Position: -49
Score: 4.7
Sequence: TAGAAAGCGGTTACTA
Locus tag: JDM1_2913
JDM1_2913 -49 4.7 TAGAAAGCGGTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Multiple sugar ABC transporter, permease protein 2
Lactobacillus plantarum WCFS1 lp_3644 -187 4.3 TAATAAACGTTTTAAT
-49 4.4 GAGAAAGCGGTTACTA
Position: -61
Score: 4.4
Sequence: ATGTATGCGCTTTCGT
Locus tag: JDM1_2925
JDM1_2925 -61 4.4 ATGTATGCGCTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sorD
Ortholog function: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Lactobacillus plantarum WCFS1 lp_3657 -61 4.4 ATGTATGCGCTTTCGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1894 -63 4.3 TTGTAACCGTTAACAC
Position: -72
Score: 4.9
Sequence: ATTAAAACGTTTTCAT
Locus tag: JDM1_2928
JDM1_2928 -72 4.9 ATTAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM LBA0587 -61 4.1 TTGGATGCGTTTTTTT
Lactobacillus plantarum WCFS1 lp_3660 -72 4.9 ATTAAAACGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1699 -65 4.9 ATTAAAACGTTTTCAT
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