Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus rhamnosus HN001

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus rhamnosus HN001
Orthologous TF(s) LRH_00392
Regulated genes 42
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus rhamnosus HN001
Locus tag Position Score Sequence
Position: -44
Score: 4.4
Sequence: ATGAAAACGGTTAACA
Locus tag: LRH_02002
LRH_02002 -44 4.4 ATGAAAACGGTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgI
Ortholog function: Putative NAD(P)H nitroreductase
Lactobacillus casei ATCC 334 LSEI_0717 -98 4.7 TTGAAAGCGCTATCGT
Lactobacillus plantarum WCFS1 lp_0062 -96 4.4 ATGAAAGCGTAGTCAA
Lactobacillus rhamnosus GG LGG_00706 -106 4.7 TTGAAAGCGCTATCGT
Position: -64
Score: 4.7
Sequence: ATAAAAACGGTTACAA
Locus tag: LRH_02247
LRH_02247 -64 4.7 ATAAAAACGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus casei ATCC 334 LSEI_0664 -65 4.7 ATAAAAACGGTTACAA
Lactobacillus rhamnosus GG LGG_00653 -64 4.7 ATAAAAACGGTTACAA
Position: -51
Score: 5.1
Sequence: TAGAAAACGTTTTCAT
Locus tag: LRH_02292
LRH_02292 -51 5.1 TAGAAAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus casei ATCC 334 LSEI_0662 -51 4.7 CTGGAAACGCTTTCAT
Lactobacillus rhamnosus GG LGG_00644 -51 5.1 TAGAAAACGTTTTCAT
Position: -95
Score: 4.5
Sequence: ATGAAATCGGATACAT
Locus tag: LRH_02437
LRH_02437 -95 4.5 ATGAAATCGGATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27)
Lactobacillus casei ATCC 334 LSEI_0634 -140 4.5 ATGAAATCGGATACAT
Lactobacillus rhamnosus GG LGG_00606 -94 4.5 ATGAAATCGGATACAT
Position: -27
Score: 4.3
Sequence: GTGAAAACGGTTACTG
Locus tag: LRH_02462
LRH_02462 -27 4.3 GTGAAAACGGTTACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -100
Score: 3.9
Sequence: TTGAGCGCGTTTTCAA
Locus tag: LRH_05214
LRH_05214 -100 3.9 TTGAGCGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgm
Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7)
Lactobacillus casei ATCC 334 LSEI_0949 -102 3.9 TTGAGCGCGTTTTCAA
Lactobacillus johnsonii NCC 533 LJ0862 -121 4.3 ATAAAAGCGTTTAATA
Lactobacillus plantarum WCFS1 lp_0764 -40 4.4 TTGTAAGCACTAACAA
Lactobacillus rhamnosus GG LGG_00921 -100 3.9 TTGAGCGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0446 -77 4.1 AAAAAAACGCTTTCTG
Position: -160
Score: 4.1
Sequence: ATGAAAAGGGTTTCCT
Locus tag: LRH_06416
LRH_06416 -160 4.1 ATGAAAAGGGTTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pnuC
Ortholog function: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter
Lactobacillus acidophilus NCFM LBA1653 -190 4.7 ATAAAAGCGTTTTAAA
Lactobacillus brevis ATCC 367 LVIS_0311 -188 4.6 TTGAAAGCGCTTTATG
Lactobacillus johnsonii NCC 533 LJ0643 -173 4.6 AAGAAAGCGCTATCTA
Lactobacillus rhamnosus GG LGG_01221 -158 4.1 ATGAAAAGGGTTTCCA
Position: -77
Score: 4.8
Sequence: ATGAATGCGGTTACAA
Locus tag: LRH_11659
LRH_11659 -77 4.8 ATGAATGCGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: LBA0143
Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20); Alpha-glucosidase, family 31 of glycosyl hydrolase
Lactobacillus casei ATCC 334 LSEI_2769 -90 4.8 TTGAATGCGGTTACAA
Lactobacillus helveticus DPC 4571 lhv_0152 -130 4.7 GTAAAAGCGCTTACAT
Lactobacillus rhamnosus GG LGG_02762 -77 4.8 ATGAATGCGGTTACAA
Position: -91
Score: 4.2
Sequence: CTGAAAGCGCTTGTAA
Locus tag: LRH_11974
LRH_11974 -91 4.2 CTGAAAGCGCTTGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pts20B
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2817 -89 4.6 TTGAAAACGCTTGTAA
-39 4.3 CAGAAAACGATTACAT
Lactobacillus rhamnosus GG LGG_02823 -91 4.2 CTGAAAGCGCTTGTAA
Position: -247
Score: 4.5
Sequence: ATGAAAGGGATTACAT
Locus tag: LRH_00687
LRH_00687 -247 4.5 ATGAAAGGGATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nplT
Ortholog function: Neopullulanase (EC 3.2.1.135)
Lactobacillus fermentum IFO 3956 LAF_0739 -96 4.6 GTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1 lp_3627 -73 4.5 ATGTAAGGGGTTACAT
Lactobacillus reuteri JCM 1112 LAR_0078 -130 4.9 ATGTAATCGTTTACAT
Position: -80
Score: 4.5
Sequence: TTGACAGCGCTTCCAT
Locus tag: LRH_00957
LRH_00957 -80 4.5 TTGACAGCGCTTCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon transcriptional regulator, LacI family
Lactobacillus casei ATCC 334 LSEI_0306 -88 4.5 TTGACAGCGCTTCCAA
Lactobacillus rhamnosus GG LGG_00372 -89 4.5 TTGACAGCGCTTCCAT
Lactobacillus sakei subsp. sakei 23K LSA0203 -114 4.3 TGTAAACCGTTTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0795 -76 5.1 ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_0146 -45 4.6 TTGTAAACGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_1700 -140 4.2 ATATAAGCGTTTAATT
Position: -36
Score: 4.7
Sequence: ATGAATGCGTTTTCTT
Locus tag: LRH_11372
LRH_11372 -36 4.7 ATGAATGCGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacX
Ortholog function: Aldose 1-epimerase
Lactobacillus casei ATCC 334 LSEI_2598 -36 4.5 TTGAATGCGTTTTCGT
Lactobacillus johnsonii NCC 533 LJ0171 -84 4.2 ATGTTATCGCTTACAG
Lactobacillus rhamnosus GG LGG_02577 -36 4.7 ATGAATGCGTTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_1763 -76 4.3 AAGAAAGCCTTTACAT
Position: -194
Score: 4.7
Sequence: TTGTAAGCGGTTTCTG
Locus tag: LRH_12584
LRH_12584 -194 4.7 TTGTAAGCGGTTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: H+/gluconate symporter related permease
Lactobacillus brevis ATCC 367 LVIS_1586 -19 4.5 ATGAAAGGGCTTACTT
Lactobacillus casei ATCC 334 LSEI_0229 -43 4.9 TTGTAAGCGATTTCTT
Lactobacillus rhamnosus GG LGG_00277 -194 4.7 TTGTAAGCGGTTTCTG
Lactobacillus sakei subsp. sakei 23K LSA0299 -36 4.5 ATGTAAACGCAAACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1360 -35 4.7 AAGAAAGCGGTTACTT
Position: -89
Score: 4.1
Sequence: GTGAAAGGGTTTGCAT
Locus tag: LRH_01318
LRH_01318 -89 4.1 GTGAAAGGGTTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus acidophilus NCFM LBA1974 -110 4.4 GAAAAAGCGGTTTCAT
-78 4 AAGATAGCGTTTTGAA
Lactobacillus brevis ATCC 367 LVIS_0313 -152 4.3 TTGAAAGCGTGAACAA
Lactobacillus casei ATCC 334 LSEI_1784 -149 4 GTTTAAGCGTTTTATA
-92 4.4 ATGAAAGGGCTTGCAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_2034 -76 4 TTGATAGCACTTGCAA
Lactobacillus johnsonii NCC 533 LJ1853 -79 4.1 CAGCAACCGCTTTCAA
Lactobacillus plantarum WCFS1 lp_0849 -390 4.3 ATGTAAGCGTCATCAT
-86 4.9 ATAAAAGCGTTTACAT
Lactobacillus rhamnosus GG LGG_01836 -136 4.6 ATTAAAGCGCTTTCCT
-89 4.1 GTGAAAGGGTTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1830 -71 4.1 TTTGTAACGCTTACAA
Position: -276
Score: 4.2
Sequence: ATGCAAGCGTTTTACT
Locus tag: LRH_00387
LRH_00387 -276 4.2 ATGCAAGCGTTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -95
Score: 4
Sequence: AGTAAAACGCTTGCAT
Locus tag: LRH_00392
LRH_00392 -95 4 AGTAAAACGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -111
Score: 4.2
Sequence: AATAAAACGCTTGCAA
Locus tag: LRH_05956
LRH_05956 -111 4.2 AATAAAACGCTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -65
Score: 4.5
Sequence: TTGTCAGCGATTACAT
Locus tag: LRH_10340
LRH_10340 -65 4.5 TTGTCAGCGATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2888 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus plantarum WCFS1 lp_0230 -63 4.8 TTGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02912 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1620 -56 4.2 CAGTAAACGTTATCAT
Position: -150
Score: 4.1
Sequence: TCGAAATCGCTTTCTT
Locus tag: LRH_03588
LRH_03588 -150 4.1 TCGAAATCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplA1
Ortholog function: Lipoate-protein ligase A
Lactobacillus brevis ATCC 367 LVIS_0180 -101 4.7 TTGTAATCGATTACAA
Lactobacillus casei ATCC 334 LSEI_1473 -101 4.1 TCGAAATCGCTTTCTT
Lactobacillus fermentum IFO 3956 LAF_1136 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus reuteri JCM 1112 LAR_1565 -104 4.7 TTGCAAACGCTTACTA
Lactobacillus rhamnosus GG LGG_01479 -150 4.1 TCGAAATCGCTTTCTT
Lactobacillus sakei subsp. sakei 23K LSA0934 -20 4.3 ATGAAAGGGGTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0157 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Position: -115
Score: 4.5
Sequence: GAGAAAGCGCTTATAA
Locus tag: LRH_13901
LRH_13901 -115 4.5 GAGAAAGCGCTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cad
Ortholog function: Predicted pheromone precursor lipoprotein, related to Cad
Lactobacillus casei ATCC 334 LSEI_2296 -115 4.5 GAGAAAGCGCTTATAA
Lactobacillus rhamnosus GG LGG_02307 -115 4.5 GAGAAAGCGCTTATAA
Oenococcus oeni PSU-1 OEOE_1090 -237 4.2 TTGACACCGGTTTTAT
-101 5.1 TTGAAAGCGTTTCCAA
Position: -79
Score: 4.6
Sequence: TTGAAAGCGTTTTCGG
Locus tag: LRH_08358
LRH_08358 -79 4.6 TTGAAAGCGTTTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lulA
Ortholog function: Lactate utilization protein A
Lactobacillus casei ATCC 334 LSEI_2070 -79 4.6 TTATAAACGCTTTCAG
-30 4.5 TTGGAATCGTTTTAAT
Lactobacillus reuteri JCM 1112 LAR_0364 -115 4.6 ATTAAATCGTTTTCAA
Lactobacillus rhamnosus GG LGG_02071 -79 4.4 TTGAAACCGTTTTCGG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1117 -69 4.5 ATGAAAGCGAATTTAA
Position: -106
Score: 4.9
Sequence: ATGAAAACGCTTGCAT
Locus tag: LRH_10737
LRH_10737 -106 4.9 ATGAAAACGCTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: simA
Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Lactobacillus acidophilus NCFM LBA1689 -100 4.5 GTGAAAGCGAATACAT
Lactobacillus casei ATCC 334 LSEI_0369 -105 4.9 TTGAAACCGCTTGCAT
Lactobacillus johnsonii NCC 533 LJ0635 -127 5.2 TTGAAAACGCTTTCTT
Position: -146
Score: 4.7
Sequence: TTAAATGCGCTTTCAT
Locus tag: LRH_14111
LRH_14111 -146 4.7 TTAAATGCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lhv_0924
Ortholog function: Predicted transcriptional regulator, GntR family
Lactobacillus helveticus DPC 4571 lhv_0924 -236 5.2 TTGTAAGCGATTTCAA
-149 4.7 TAGGAACCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0152 -193 4.2 ATGTAGCCGGTTACAT
Lactobacillus rhamnosus GG LGG_02679 -170 4.7 TTAAATGCGCTTTCAT
Oenococcus oeni PSU-1 OEOE_1211 -167 4.4 ATGAAATCGCTACCAT
-115 4 ATGTAAACTCTTTTTT
Pediococcus pentosaceus ATCC 25745 PEPE_1777 -141 4.7 TTGAATTCGCTTTCAT
Position: -58
Score: 4.5
Sequence: TTGCAAGCGCTTACGA
Locus tag: LRH_14116
LRH_14116 -58 4.5 TTGCAAGCGCTTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucR
Ortholog function: L-fucose utilization transcriptional regulator FucR, DeoR family
Lactobacillus plantarum WCFS1 lp_3598 -279 4.9 TTGTAAGCGCATACAT
-189 3.9 TAGTAATCGGTAAAAA
Lactobacillus rhamnosus GG LGG_02680 -58 4.5 TTGCAAGCGCTTACGA
Position: -87
Score: 4.7
Sequence: ATGAAAGCGCTTATTA
Locus tag: LRH_14141
LRH_14141 -87 4.7 ATGAAAGCGCTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucI
Ortholog function: L-fucose isomerase (EC 5.3.1.25)
Lactobacillus rhamnosus GG LGG_02685 -87 4.7 ATGAAAGCGCTTATTA
Position: -64
Score: 4.8
Sequence: ATGTAAGCGGTTAAAT
Locus tag: LRH_14166
LRH_14166 -64 4.8 ATGTAAGCGGTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaY
Ortholog function: Predicted L-rhamnose permease RhaY
Lactobacillus plantarum WCFS1 lp_3596 -33 4.7 ATGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02691 -64 4.8 ATGTAAGCGGTTAAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1751 -73 4.6 TTGAAAACGGTTAATA
Position: -193
Score: 4.4
Sequence: TTGCAAGCGTTTACGT
Locus tag: LRH_04904
LRH_04904 -193 4.4 TTGCAAGCGTTTACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27)
Lactobacillus acidophilus NCFM LBA0271 -205 3.8 ATGAAACCAGTATTAT
Lactobacillus casei ATCC 334 LSEI_2549 -193 4 CTGGAAACGCTTACGT
Lactobacillus rhamnosus GG LGG_02523 -193 4.4 TTGCAAGCGTTTACGT
Position: -82
Score: 4.8
Sequence: TTGAAACCGTATACAA
Locus tag: LRH_04694
LRH_04694 -82 4.8 TTGAAACCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
Lactobacillus casei ATCC 334 LSEI_2045 -81 4.3 CTGAAACCGTATACAA
-14 4.1 AAGGAAGCTGTTTCAT
Lactobacillus rhamnosus GG LGG_02032 -82 4.8 TTGAAACCGTATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0144 -75 4.9 TTGTAAGCGGTTTTAT
Position: -198
Score: 4
Sequence: CCGAAAGCGGTTACAA
Locus tag: LRH_04719
LRH_04719 -198 4 CCGAAAGCGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Lactobacillus acidophilus NCFM LBA0680 -55 4.3 AAGTAAGCGCTTTCCG
Lactobacillus casei ATCC 334 LSEI_2040 -230 4.1 TTGTAATCGCTGTTAA
-208 4.4 CAGTAAGCGGTTACAA
Lactobacillus rhamnosus GG LGG_02027 -197 4 CCGAAAGCGGTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1294 -88 4 GTGAAAGCTATTTCTT
Position: -50
Score: 3.8
Sequence: ATGAAAACTCTGTAAA
Locus tag: LRH_10642
LRH_10642 -50 3.8 ATGAAAACTCTGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaA
Ortholog function: GMP synthase (EC 6.3.5.2)
Lactobacillus johnsonii NCC 533 LJ0229 -120 4 ATTAAAGCGCTATTTT
Lactobacillus plantarum WCFS1 lp_0914 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0139 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1537 -75 4.2 TTGAAAGCGTAATATT
Pediococcus pentosaceus ATCC 25745 PEPE_0412 -103 4.3 TTGATAGCCTTTTCAT
Position: -85
Score: 4.4
Sequence: GTGAAAGCCTTTTCAA
Locus tag: LRH_01127
LRH_01127 -85 4.4 GTGAAAGCCTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Lactobacillus johnsonii NCC 533 LJ0149 -38 5 TTGAAACCGCTTTCTA
Lactobacillus plantarum WCFS1 lp_3418 -68 4.8 AAGAAAACGCTTTCTT
Lactobacillus rhamnosus GG LGG_01876 -85 4.4 GTGAAAGCCTTTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0395 -46 4.4 ATGAAAGCGTATTATA
Position: -47
Score: 4.2
Sequence: AGGAAAACGCTACCAT
Locus tag: LRH_08773
LRH_08773 -47 4.2 AGGAAAACGCTACCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sorD
Ortholog function: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Lactobacillus casei ATCC 334 LSEI_2729 -304 4.1 ATGTAACGGCTTATAT
Lactobacillus rhamnosus GG LGG_02722 -47 4.4 AAGAAAACGCTACCAT
Position: -137
Score: 4.9
Sequence: TTAAAACCGCTTTCAT
Locus tag: LRH_08788
LRH_08788 -137 4.9 TTAAAACCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araD
Ortholog function: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Lactobacillus brevis ATCC 367 LVIS_1741 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1557 -111 4.6 ATGAAAACGGTTTATT
Lactobacillus plantarum WCFS1 lp_3555 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0469 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1857 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0855 -104 5 TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0164 -48 4.9 ATGAATACGCTTTCAA
Position: -68
Score: 4.7
Sequence: TTGTAAGCGCAATCAA
Locus tag: LRH_08828
LRH_08828 -68 4.7 TTGTAAGCGCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ulaG
Ortholog function: Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)
Lactobacillus casei ATCC 334 LSEI_2739 -69 4.2 TTGTAAGCGTATCCAG
Lactobacillus rhamnosus GG LGG_02733 -68 4.7 TTGTAAGCGCAATCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1998 -53 4.9 ATGTAAGCGCATACAT
-19 4.1 TAGAAAGGGTTTAAAT
Position: -153
Score: 3.9
Sequence: TTGATAGCGGATTATT
Position: -18
Score: 4
Sequence: AAGGGAGCGTTTACAA
Locus tag: LRH_05049
LRH_05049 -153 3.9 TTGATAGCGGATTATT
-18 4 AAGGGAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM LBA1632 -66 4.7 TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367 LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334 LSEI_2278 -18 4.1 AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956 LAF_0045 -62 4.3 GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533 LJ0671 -44 4.6 AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1 lp_3092 -45 4 GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112 LAR_0033 -132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
© 2009-2020 RegPrecise