Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus reuteri JCM 1112

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus reuteri JCM 1112
Orthologous TF(s) LAR_0536
Regulated genes 35
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus reuteri JCM 1112
Locus tag Position Score Sequence
Position: -39
Score: 4.4
Sequence: ATGGAATCGTATTCAA
Locus tag: LAR_0029
LAR_0029 -39 4.4 ATGGAATCGTATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus brevis ATCC 367 LVIS_2191 -191 4.6 TTGAAAGCGGTAAAAA
Lactobacillus fermentum IFO 3956 LAF_0741 -39 4.7 ATGGAAGCGTATTCAA
Lactobacillus plantarum WCFS1 lp_3051 -36 4.7 ATGATAGCGATTACAA
Lactobacillus reuteri JCM 1112 LAR_0029 -39 4.4 ATGGAATCGTATTCAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -147 4.2 TTTGTAACGCTTTCAT
-55 4.1 CGGTAAGCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0276 -104 4.1 ATAAAAACGTTTAACT
-71 4.7 TTGTAAACGGATACAT
-15 4 AAGAAGGCGTTTAAAA
Position: -176
Score: 4.1
Sequence: AAGAAAGCGTTTGCTG
Position: -132
Score: 4.1
Sequence: ATAAAAGGGCTTTTAT
Position: -30
Score: 4.6
Sequence: ATGTAAGCGTTTATTT
Locus tag: LAR_0033
LAR_0033 -176 4.1 AAGAAAGCGTTTGCTG
-132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM LBA1632 -66 4.7 TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367 LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334 LSEI_2278 -18 4.1 AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956 LAF_0045 -62 4.3 GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533 LJ0671 -44 4.6 AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1 lp_3092 -45 4 GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112 LAR_0033 -132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
Position: -130
Score: 4.9
Sequence: ATGTAATCGTTTACAT
Position: -67
Score: 4.9
Sequence: AAGTAAACGTTTACAT
Locus tag: LAR_0078
LAR_0078 -130 4.9 ATGTAATCGTTTACAT
-67 4.9 AAGTAAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nplT
Ortholog function: Neopullulanase (EC 3.2.1.135)
Lactobacillus fermentum IFO 3956 LAF_0739 -96 4.6 GTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1 lp_3627 -73 4.5 ATGTAAGGGGTTACAT
Lactobacillus reuteri JCM 1112 LAR_0078 -130 4.9 ATGTAATCGTTTACAT
Position: -74
Score: 5.3
Sequence: TTGAAAACGTTTACAA
Locus tag: LAR_0083
LAR_0083 -74 5.3 TTGAAAACGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malR3
Ortholog function: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
Lactobacillus plantarum WCFS1 lp_3531 -113 4.4 ACGTAAACGTTTACAA
-81 4.4 AAGTAAACGTTTACAC
Lactobacillus reuteri JCM 1112 LAR_0083 -74 5.3 TTGAAAACGTTTACAA
Position: -74
Score: 4.6
Sequence: CTAAAAACGCTTTCAA
Locus tag: LAR_0192
LAR_0192 -74 4.6 CTAAAAACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Lactobacillus casei ATCC 334 LSEI_0748 -108 4 ATGAAAACGATGAAAA
Lactobacillus plantarum WCFS1 lp_0242 -37 4.8 ATGATACCGCTTTCAA
Lactobacillus reuteri JCM 1112 LAR_0192 -74 4.6 CTAAAAACGCTTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1571 -62 4.5 TTGTGAACGTTTTCAT
Position: -53
Score: 4.4
Sequence: ATGAAAGCGCTATACT
Locus tag: LAR_0276
LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Position: -132
Score: 4.8
Sequence: TTGTAAGCGAATTCAT
Locus tag: LAR_0310
LAR_0310 -132 4.8 TTGTAAGCGAATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -161 4.3 AAGCAAGCGCTTCCAT
Lactobacillus brevis ATCC 367 LVIS_0119 -173 4.4 CTGTATGCGCTTACAT
Lactobacillus fermentum IFO 3956 LAF_0277 -197 4.7 TTGAAAACGCTTTCTC
Lactobacillus johnsonii NCC 533 LJ1766 -162 4.5 ATGTAACCGATAACAT
Lactobacillus reuteri JCM 1112 LAR_0310 -132 4.8 TTGTAAGCGAATTCAT
Lactobacillus sakei subsp. sakei 23K LSA0379 -74 4.5 TTACAAACGGTTTCAA
Position: -115
Score: 4.6
Sequence: ATTAAATCGTTTTCAA
Locus tag: LAR_0364
LAR_0364 -115 4.6 ATTAAATCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lulA
Ortholog function: Lactate utilization protein A
Lactobacillus casei ATCC 334 LSEI_2070 -79 4.6 TTATAAACGCTTTCAG
-30 4.5 TTGGAATCGTTTTAAT
Lactobacillus reuteri JCM 1112 LAR_0364 -115 4.6 ATTAAATCGTTTTCAA
Lactobacillus rhamnosus GG LGG_02071 -79 4.4 TTGAAACCGTTTTCGG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1117 -69 4.5 ATGAAAGCGAATTTAA
Position: -135
Score: 4.4
Sequence: TGAAAAGCGATTTCAA
Position: -76
Score: 4.5
Sequence: TTGTAATCACTTTCAA
Locus tag: LAR_0399
LAR_0399 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM LBA1485 -101 4.7 TTGAAAGCGATTACAC
Lactobacillus fermentum IFO 3956 LAF_1738 -158 4.3 TAGCAAACGCTTGCAT
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus fermentum IFO 3956 LAF_1689 -91 4.3 TTGTAACCGGTTTACA
Lactobacillus fermentum IFO 3956 LAF_1738 -158 4.3 TAGCAAACGCTTGCAT
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus reuteri JCM 1112 LAR_0399 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Lactobacillus reuteri JCM 1112 LAR_0399 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Position: -149
Score: 4.8
Sequence: ATGGAAACGCTATCAT
Locus tag: LAR_0406
LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0827
Ortholog function: Conserved hypothetical protein
Lactobacillus brevis ATCC 367 LVIS_0695 -166 4.9 TTGACAGCGCTTACAA
Lactobacillus fermentum IFO 3956 LAF_0383 -179 4.9 TTGACAGCGCTTACAA
Lactobacillus reuteri JCM 1112 LAR_0406 -149 4.8 ATGGAAACGCTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0428 -174 4.8 TTGACAACGCTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1300 -200 4.3 TTGACACCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_0479 -181 5.1 TTGTAAGCGTTATCAT
Position: -69
Score: 4.4
Sequence: TTGAAACCGACTTCAT
Locus tag: LAR_0415
LAR_0415 -69 4.4 TTGAAACCGACTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Lactobacillus acidophilus NCFM LBA0752 -90 4.3 GTGAATGCGCTTATAA
Lactobacillus casei ATCC 334 LSEI_1126 -62 4 ATGAAACCACTCTCAT
Lactobacillus fermentum IFO 3956 LAF_1686 -63 4.4 GAGTTAGCGCTTTCAT
Lactobacillus fermentum IFO 3956 LAF_0411 -66 4.2 ATGGAAACGTTATCGT
Lactobacillus helveticus DPC 4571 lhv_0795 -14 4 TAGGAAGCGGATTTAT
Lactobacillus plantarum WCFS1 lp_2502 -77 3.8 GAGGAAGCGCTTTTCA
Lactobacillus reuteri JCM 1112 LAR_0415 -69 4.4 TTGAAACCGACTTCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0355 -37 5 TTGTAACCGATTTCAT
Oenococcus oeni PSU-1 OEOE_0636 -118 3.9 TTGGAAGCTATTCCAA
Position: -144
Score: 4.2
Sequence: TTGTTTCCGCTTACAT
Locus tag: LAR_0419
LAR_0419 -144 4.2 TTGTTTCCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Ornithine carbamoyltransferase (EC 2.1.3.3)
Lactobacillus fermentum IFO 3956 LAF_0298 -65 4.7 TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112 LAR_0419 -144 4.2 TTGTTTCCGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1631 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Position: -72
Score: 4.7
Sequence: TTGACAACGTTTACAT
Locus tag: LAR_0435
LAR_0435 -72 4.7 TTGACAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Lactobacillus fermentum IFO 3956 LAF_0300 -65 4.7 TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112 LAR_0435 -72 4.7 TTGACAACGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1629 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Position: -63
Score: 4.7
Sequence: ATGAAAGCGCGTTCAT
Locus tag: LAR_0467
LAR_0467 -63 4.7 ATGAAAGCGCGTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Lactobacillus brevis ATCC 367 LVIS_1743 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1555 -100 4.3 TGGTAAGCGTTTTATA
-76 4.4 GTGAAATCGCTTACAG
Lactobacillus plantarum WCFS1 lp_3557 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0467 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1860 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0853 -104 5 TTGTAAGCGTTTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0162 -48 4.9 ATGAATACGCTTTCAA
Position: -16
Score: 3.9
Sequence: AAGAAAGGGCTATCTT
Locus tag: LAR_0536
LAR_0536 -16 3.9 AAGAAAGGGCTATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -90
Score: 4.7
Sequence: ATGAAAGCGCTTGTAT
Position: -40
Score: 4.3
Sequence: AAGCAATCGCTTACAT
Locus tag: LAR_0608
LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -139
Score: 4.4
Sequence: ATGATAGCGCTTTTTT
Locus tag: LAR_0722
LAR_0722 -139 4.4 ATGATAGCGCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pyk
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Lactobacillus acidophilus NCFM LBA0957 -134 4.2 ATGTAAGTGCTAACAT
Lactobacillus brevis ATCC 367 LVIS_0765 -181 4.1 CGGAAAACGCTTACTT
Lactobacillus fermentum IFO 3956 LAF_0868 -125 4.5 AAGAAACCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_1050 -136 4.2 ATGTAAGTGCTAACAT
Lactobacillus johnsonii NCC 533 LJ1080 -132 4.5 TTGAAAGCGAAAACAT
Lactobacillus reuteri JCM 1112 LAR_0722 -139 4.4 ATGATAGCGCTTTTTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0775 -169 4.6 GTGAAACCGTTATCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1092 -116 4 AATAAAGCACTTACAT
Position: -254
Score: 4.5
Sequence: GAGAAAGCGCTTAAAA
Locus tag: LAR_0837
LAR_0837 -254 4.5 GAGAAAGCGCTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufC
Ortholog function: Iron-sulfur cluster assembly ATPase protein
Lactobacillus plantarum WCFS1 lp_1468 -186 4.5 ATGAAAGGGCTTTTAT
-138 4.3 ATGAAAACGGTTATAC
Lactobacillus sakei subsp. sakei 23K LSA1113 -74 3.9 TGAAAAGCGTTCTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1881 -181 4.2 ATGTAAGCGTTATTCT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2038 29 4.4 GAGAAAACGCTTAAAA
Position: -101
Score: 4.4
Sequence: GTGAAAACGAATACAA
Locus tag: LAR_0851
LAR_0851 -101 4.4 GTGAAAACGAATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lrgA
Ortholog function: Antiholin-like protein LrgA
Lactobacillus brevis ATCC 367 LVIS_0621 -235 4.4 GTGTAAGCGTTTCCTT
Lactobacillus reuteri JCM 1112 LAR_0851 -101 4.4 GTGAAAACGAATACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0697 -88 4.8 GTGAAAGCGCTAACAT
Position: -66
Score: 4.5
Sequence: ACGAAAACGTTTACAT
Locus tag: LAR_0972
LAR_0972 -66 4.5 ACGAAAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: agl3
Ortholog function: Oligo-1,6-glucosidase (EC 3.2.1.10)
Lactobacillus acidophilus NCFM LBA1812 -40 4.8 TTGAAAGCGAATACAT
Lactobacillus johnsonii NCC 533 LJ0569 -35 4.8 TTGAAAGCGAATACAA
Lactobacillus plantarum WCFS1 lp_3534 -104 4.6 GTGTAAACGTTTACTT
-72 4.7 TTGTAAACGTTTACGT
Lactobacillus reuteri JCM 1112 LAR_0972 -66 4.5 ACGAAAACGTTTACAT
Position: -42
Score: 4.7
Sequence: TTGTAAGCGATTACAG
Locus tag: LAR_1033
LAR_1033 -42 4.7 TTGTAAGCGATTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacS
Ortholog function: Lactose and galactose permease, GPH translocator family
Lactobacillus fermentum IFO 3956 LAF_0779 -92 4.2 TCGTAATCGGTTTCAT
Lactobacillus helveticus DPC 4571 lhv_1543 -41 4.6 GTGTAAGCGATTTCTA
Lactobacillus plantarum WCFS1 lp_3468 -177 4.2 AATAATACGCTTTCAT
-66 4.6 ATGAAAGCGCTTATCA
Lactobacillus reuteri JCM 1112 LAR_1033 -42 4.7 TTGTAAGCGATTACAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1065 -80 4.5 CTGTAAGCGCTTCCAT
Position: -102
Score: 4
Sequence: TATTTAACGCTTACAA
Locus tag: LAR_1256
LAR_1256 -102 4 TATTTAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: Phosphotransferase system, HPr-related protein
Lactobacillus acidophilus NCFM LBA0639 -111 4.4 ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0512 -108 4.7 ATGAAAACATTTACAA
Lactobacillus helveticus DPC 4571 lhv_0686 -109 4.4 ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533 LJ0816 -109 4.6 ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1 lp_1273 -135 4 ATGAAAGGGCTTGTAT
Lactobacillus reuteri JCM 1112 LAR_1256 -102 4 TATTTAACGCTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0388 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1780 -157 5.3 ATGTAAACGTTTTCAT
-63 4.7 TTGTAAGCGCTTTGAT
Pediococcus pentosaceus ATCC 25745 PEPE_0609 -127 4 ATGTAAGGGCTTGCTT
Position: -33
Score: 4.4
Sequence: GTAAAAGCGCTTACTT
Locus tag: LAR_1448
LAR_1448 -33 4.4 GTAAAAGCGCTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galM
Ortholog function: Aldose 1-epimerase (EC 5.1.3.3); Galactose mutarotase and related enzymes
Lactobacillus fermentum IFO 3956 LAF_1662 -40 4.6 TGGAAAACGCTTACTA
Lactobacillus reuteri JCM 1112 LAR_1448 -33 4.4 GTAAAAGCGCTTACTT
Position: -190
Score: 4
Sequence: AAAATAGCGTTATCAT
Position: -133
Score: 4
Sequence: ATGTAATGGATTACAA
Locus tag: LAR_1453
LAR_1453 -190 4 AAAATAGCGTTATCAT
-133 4 ATGTAATGGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrT
Ortholog function: Predicted sucrose permease
Lactobacillus reuteri JCM 1112 LAR_1453 -190 4 AAAATAGCGTTATCAT
-133 4 ATGTAATGGATTACAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0383 -137 4.1 ATGATAATGTTTTCAT
-54 4.4 GTGGAACCGGTTACAA
Position: -65
Score: 4.6
Sequence: TTGAAGCCGCTTTCAA
Locus tag: LAR_1455
LAR_1455 -65 4.6 TTGAAGCCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcD
Ortholog function: Arginine/ornithine antiporter
Lactobacillus brevis ATCC 367 LVIS_2031 -40 4.5 ATCAAACCGCTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1176 -36 4.4 ATGTAAGCATATTCAT
Lactobacillus reuteri JCM 1112 LAR_1455 -65 4.6 TTGAAGCCGCTTTCAA
Position: -52
Score: 4.6
Sequence: ATGTAAGCGTAATCAT
Locus tag: LAR_1508
LAR_1508 -52 4.6 ATGTAAGCGTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT2
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus reuteri JCM 1112 LAR_1508 -89 4.2 GTGCAAGCGGTTGCAA
-52 4.6 ATGTAAGCGTAATCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0898 -72 4.8 ATGTAAGCGGTTACTT
Position: -44
Score: 4.6
Sequence: GAGTAACCGTTTTCAT
Locus tag: LAR_1512
LAR_1512 -44 4.6 GAGTAACCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaA
Ortholog function: Pantothenate kinase (EC 2.7.1.33)
Lactobacillus fermentum IFO 3956 LAF_1646 -35 4 ATGTAAGGGCTATCCA
Lactobacillus plantarum WCFS1 lp_0913 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus reuteri JCM 1112 LAR_1512 -44 4.6 GAGTAACCGTTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0138 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1538 -75 4.2 TTGAAAGCGTAATATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1881 -107 4.1 TTGTATACTGTTTCAT
Position: -104
Score: 4.7
Sequence: TTGCAAACGCTTACTA
Locus tag: LAR_1565
LAR_1565 -104 4.7 TTGCAAACGCTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplA1
Ortholog function: Lipoate-protein ligase A
Lactobacillus brevis ATCC 367 LVIS_0180 -101 4.7 TTGTAATCGATTACAA
Lactobacillus casei ATCC 334 LSEI_1473 -101 4.1 TCGAAATCGCTTTCTT
Lactobacillus fermentum IFO 3956 LAF_1136 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus reuteri JCM 1112 LAR_1565 -104 4.7 TTGCAAACGCTTACTA
Lactobacillus rhamnosus GG LGG_01479 -150 4.1 TCGAAATCGCTTTCTT
Lactobacillus sakei subsp. sakei 23K LSA0934 -20 4.3 ATGAAAGGGGTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0157 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Position: -50
Score: 4.7
Sequence: TAGAAAACGCATACAA
Locus tag: LAR_1640
LAR_1640 -50 4.7 TAGAAAACGCATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF2
Ortholog function: Glycerol uptake facilitator protein
Lactobacillus acidophilus NCFM LBA1436 -35 4.7 TTGTAAGCGATTGCAT
Lactobacillus brevis ATCC 367 LVIS_1619 -113 4.7 ATGATACCGCTTACAA
Lactobacillus plantarum WCFS1 lp_0171 -58 4.6 TTGAAATCGGATTCAT
Lactobacillus reuteri JCM 1112 LAR_1640 -50 4.7 TAGAAAACGCATACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0112 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1630 -64 5 TTGAAAGCGTTTATAT
Position: -125
Score: 4.5
Sequence: GTGTAATCGTTTTCTT
Position: -93
Score: 4.4
Sequence: TTGTAAGCGCTTATTG
Locus tag: LAR_1662
LAR_1662 -125 4.5 GTGTAATCGTTTTCTT
-93 4.4 TTGTAAGCGCTTATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus acidophilus NCFM LBA1459 -36 4.3 CTGAAAACGATTACAG
Lactobacillus brevis ATCC 367 LVIS_1904 -98 4.7 ATGAAAACGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_1792 -99 4.1 ATGTAAGCGCTCTATT
Lactobacillus helveticus DPC 4571 lhv_1501 -37 4.8 TTGAAAACGATTACAG
Lactobacillus johnsonii NCC 533 LJ0859 -36 5.1 ATGAAAACGATTACAA
Lactobacillus reuteri JCM 1112 LAR_1662 -125 4.5 GTGTAATCGTTTTCTT
-93 4.4 TTGTAAGCGCTTATTG
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