Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HrcA regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: HrcA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) LVIS_1331
Regulated genes 3
Built upon 69 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -62
Score: 6.4
Sequence: TTAGCACTTATGTTAGTCAAGTGCTAA
Locus tag: LVIS_0617
LVIS_0617 -62 6.4 TTAGCACTTATGTTAGTCAAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: groS
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Lactobacillus acidophilus NCFM LBA0405 -159 7.6 TTAGCACTTTTTTATAAAGAGTGCTAA
-84 6.8 TTAGCACTTAACTAAAAGGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_0617 -62 6.4 TTAGCACTTATGTTAGTCAAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1497 -140 6.5 TTAGCACTCTCGACTAAAAAGTGCTAT
-65 6.7 TTAGCACTTGATCAAGATGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0325 -87 5.7 TTAGCACTTGAGGGGGTTGAGTGCTAG
Lactobacillus helveticus DPC 4571 lhv_0425 -159 6.9 TTAGCACTATTTGTAAAAAAGTGCTAA
-85 7.1 TTAGCACTTAAGAAATAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_0727 -51 6.4 TTAGCACTTGAGGTTGAGGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0342 -61 6.5 TTAGCACTTGAAGAGTTTGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0358 -55 6.8 TTAGCACTTGAGTGTTTAGAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1212 -135 6.4 TTAGCACTCTAATGTGTCGAGTGATAA
-61 7 TTAGCACTCAAGAGTTGAGAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1763 -54 7.5 TTAGCACTCACGTTTAAAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0420 -65 6.3 TTAGCACTTAGAGATGACGAGTGCTAA
Position: -127
Score: 6.1
Sequence: TTAGCACTTAATTACGTTGATTGCTAA
Position: -43
Score: 6.9
Sequence: TTAGCACTTGTGTTGTTTGAGTGCTAA
Locus tag: LVIS_1331
LVIS_1331 -127 6.1 TTAGCACTTAATTACGTTGATTGCTAA
-43 6.9 TTAGCACTTGTGTTGTTTGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hrcA
Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family
Lactobacillus acidophilus NCFM LBA1249 -93 6.1 TTAGCACTCAGGTTGCATTATTGCTAA
-45 6.1 TTAGCACCTGATAGATGTGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1331 -127 6.1 TTAGCACTTAATTACGTTGATTGCTAA
-43 6.9 TTAGCACTTGTGTTGTTTGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_1567 -42 7.6 TTAGCACTCATATAAAACGAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1229 -92 5.7 TTAGCATTCTCCTTGACTAACTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0749 -33 6.4 TTAGCACTTAGATGGCCAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1481 -91 6.4 TTAGCACTCTACTTGAACAATTGCTAA
-43 6.3 TTAGCACAGAAGAAAGAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_2029 -191 7.1 TTAGCACTCGTAAGTAAGGAGTGCTAA
-36 6.7 TTAGCACTCCATTAAGTTAAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0677 -45 6.5 TTAGCACTTGACCCTAATGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01606 -42 7.6 TTAGCACTCGTGTAAAACGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA1238 -41 7 TTAGCACTCGTAATAATCAAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0576 -41 6.6 TTAGCACTCTAATGTGTTAAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1349 -110 7.4 TTGGCACTCTTATAAAAAGAGTGCTAA
-41 6.3 TTAGCAGTTAGATATAGTGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0894 -41 6.4 TTAGCACTCCAACTTTCTAAGTGCTAA
Position: -205
Score: 6.4
Sequence: TTAGCATTCTATTGACGAGAGTGCTAG
Locus tag: LVIS_1554
LVIS_1554 -205 6.4 TTAGCATTCTATTGACGAGAGTGCTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpL
Ortholog function: ATP-dependent Clp protease, ATP-binding subunit
Lactobacillus acidophilus NCFM LBA0638 -70 6.8 TTAGCACTTGACTACCAAGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1554 -205 6.4 TTAGCATTCTATTGACGAGAGTGCTAG
Lactobacillus casei ATCC 334 LSEI_1762 -257 5.9 TTAGCACTCTTAGTGGCAGAGTGCTTG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0510 -201 6.9 TTAGCACTTGACTAACTAGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_1388 -190 5.6 TTAGCATTAGTTGCCAATCAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_0683 -71 6.7 TTAGCACTTGACTACTAAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0815 -70 7.6 TTAGCACTCATATATCAAGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_1257 -211 6.9 TTAGCATTCATGGCTAAAGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01823 -128 6.2 TTAGCACTCTTGCGGTTAGAGTGCTTG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0571 -151 7.6 TTAGCACTCTACTTTAAAGAGTGCTAA
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