Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HrcA regulog to Lactobacillus crispatus ST1

Reference regulog properties
Source regulog: HrcA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus crispatus ST1
Orthologous TF(s) LCRIS_01268
Regulated genes 6
Built upon 69 sites [see more]
Predicted regulatory interactions in Lactobacillus crispatus ST1
Locus tag Position Score Sequence
Position: -152
Score: 6.9
Sequence: TTAGCACTATATATTTTTGAGTGCTAA
Locus tag: LCRIS_00208
LCRIS_00208 -152 6.9 TTAGCACTATATATTTTTGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hsp
Ortholog function: Small heat shock protein
Lactobacillus acidophilus NCFM LBA0205 -126 7.1 TTAGCACTAAATATTAAAGAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0243 -154 6 TTAGCAGTCAAAAAAGCTGAATGCTAA
Lactobacillus helveticus DPC 4571 lhv_0222 -130 6.1 TTAGCACTATATGCTTTTGAATGCTAA
Lactobacillus johnsonii NCC 533 LJ0181 -78 5.9 TTAGCACCGTTCTAATTAGTGTGCTAA
Position: -160
Score: 7.2
Sequence: TTAGCACTCAATTGAAAAAAGTGCTAA
Position: -85
Score: 6.9
Sequence: TTAGCACTTAACAAATAAGAGTGCTAA
Locus tag: LCRIS_00403
LCRIS_00403 -160 7.2 TTAGCACTCAATTGAAAAAAGTGCTAA
-85 6.9 TTAGCACTTAACAAATAAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: groS
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Lactobacillus acidophilus NCFM LBA0405 -159 7.6 TTAGCACTTTTTTATAAAGAGTGCTAA
-84 6.8 TTAGCACTTAACTAAAAGGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_0617 -62 6.4 TTAGCACTTATGTTAGTCAAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1497 -140 6.5 TTAGCACTCTCGACTAAAAAGTGCTAT
-65 6.7 TTAGCACTTGATCAAGATGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0325 -87 5.7 TTAGCACTTGAGGGGGTTGAGTGCTAG
Lactobacillus helveticus DPC 4571 lhv_0425 -159 6.9 TTAGCACTATTTGTAAAAAAGTGCTAA
-85 7.1 TTAGCACTTAAGAAATAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_0727 -51 6.4 TTAGCACTTGAGGTTGAGGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0342 -61 6.5 TTAGCACTTGAAGAGTTTGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0358 -55 6.8 TTAGCACTTGAGTGTTTAGAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1212 -135 6.4 TTAGCACTCTAATGTGTCGAGTGATAA
-61 7 TTAGCACTCAAGAGTTGAGAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1763 -54 7.5 TTAGCACTCACGTTTAAAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0420 -65 6.3 TTAGCACTTAGAGATGACGAGTGCTAA
Position: -71
Score: 6.8
Sequence: TTAGCACTTGACTACCAAGAGTGCTAA
Locus tag: LCRIS_00649
LCRIS_00649 -71 6.8 TTAGCACTTGACTACCAAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpL
Ortholog function: ATP-dependent Clp protease, ATP-binding subunit
Lactobacillus acidophilus NCFM LBA0638 -70 6.8 TTAGCACTTGACTACCAAGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1554 -205 6.4 TTAGCATTCTATTGACGAGAGTGCTAG
Lactobacillus casei ATCC 334 LSEI_1762 -257 5.9 TTAGCACTCTTAGTGGCAGAGTGCTTG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0510 -201 6.9 TTAGCACTTGACTAACTAGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_1388 -190 5.6 TTAGCATTAGTTGCCAATCAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_0683 -71 6.7 TTAGCACTTGACTACTAAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0815 -70 7.6 TTAGCACTCATATATCAAGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_1257 -211 6.9 TTAGCATTCATGGCTAAAGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01823 -128 6.2 TTAGCACTCTTGCGGTTAGAGTGCTTG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0571 -151 7.6 TTAGCACTCTACTTTAAAGAGTGCTAA
Position: -57
Score: 7
Sequence: TTAGCACTGTACTTGAAAGAGTGCTAA
Locus tag: LCRIS_00696
LCRIS_00696 -57 7 TTAGCACTGTACTTGAAAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpP
Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
Lactobacillus acidophilus NCFM LBA0694 -59 6.1 TTAGCACAGTACTTGTATGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_0963 -51 6.9 TTAGCACTGTACTTTTAAGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0360 -44 5.5 TTAGCAAACAGTACTAACTAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_0735 -60 6.6 TTAGCACAGTACTTAAAAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0869 -49 6.9 TTAGCACTGTACTTATTAGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0379 -47 5.8 TTAGCATATAAGACTAACGAGTGCTAA
Lactobacillus rhamnosus GG LGG_00931 -54 7 TTAGCACTGTACTTTAAAGAGTGCTAA
Position: -93
Score: 6.2
Sequence: TTAGCAATCTACTTGATTTAGTGCTAA
Position: -45
Score: 6
Sequence: TTAGCACCTGAGAGATGTGAGTGCTAA
Locus tag: LCRIS_01268
LCRIS_01268 -93 6.2 TTAGCAATCTACTTGATTTAGTGCTAA
-45 6 TTAGCACCTGAGAGATGTGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hrcA
Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family
Lactobacillus acidophilus NCFM LBA1249 -93 6.1 TTAGCACTCAGGTTGCATTATTGCTAA
-45 6.1 TTAGCACCTGATAGATGTGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_1331 -127 6.1 TTAGCACTTAATTACGTTGATTGCTAA
-43 6.9 TTAGCACTTGTGTTGTTTGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_1567 -42 7.6 TTAGCACTCATATAAAACGAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1229 -92 5.7 TTAGCATTCTCCTTGACTAACTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0749 -33 6.4 TTAGCACTTAGATGGCCAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1481 -91 6.4 TTAGCACTCTACTTGAACAATTGCTAA
-43 6.3 TTAGCACAGAAGAAAGAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_2029 -191 7.1 TTAGCACTCGTAAGTAAGGAGTGCTAA
-36 6.7 TTAGCACTCCATTAAGTTAAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0677 -45 6.5 TTAGCACTTGACCCTAATGAGTGCTAA
Lactobacillus rhamnosus GG LGG_01606 -42 7.6 TTAGCACTCGTGTAAAACGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA1238 -41 7 TTAGCACTCGTAATAATCAAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0576 -41 6.6 TTAGCACTCTAATGTGTTAAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1349 -110 7.4 TTGGCACTCTTATAAAAAGAGTGCTAA
-41 6.3 TTAGCAGTTAGATATAGTGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0894 -41 6.4 TTAGCACTCCAACTTTCTAAGTGCTAA
Position: -60
Score: 7.4
Sequence: TTAGCACTCGATAAGCTAGAGTGCTAA
Locus tag: LCRIS_01954
LCRIS_01954 -60 7.4 TTAGCACTCGATAAGCTAGAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpC
Ortholog function: ATP-dependent Clp protease ATP-binding subunit ClpA
Lactobacillus acidophilus NCFM LBA1910 -57 6.9 TTAGCACTCAACGCACTAGAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_2043 -59 5.9 TTAGCACTTGAAGGCTTTAAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ1775 -58 6.7 TTAGCACTTATAACTTATGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0207 -121 5.9 GTGGCACTTTTCTTGCTAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0976 -122 6.9 TTAGCACTTTACTTAACAGAGTGCTAA
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