Propagation of HrcA regulog to Lactobacillus crispatus ST1
| Source regulog: | HrcA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus crispatus ST1 |
| Orthologous TF(s) | LCRIS_01268 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -152
Score: 6.9 Sequence: TTAGCACTATATATTTTTGAGTGCTAA
Locus tag: LCRIS_00208
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| LCRIS_00208 | -152 | 6.9 | TTAGCACTATATATTTTTGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hsp | ||||
| Ortholog function: Small heat shock protein | ||||
| Lactobacillus acidophilus NCFM | LBA0205 | -126 | 7.1 | TTAGCACTAAATATTAAAGAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0243 | -154 | 6 | TTAGCAGTCAAAAAAGCTGAATGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_0222 | -130 | 6.1 | TTAGCACTATATGCTTTTGAATGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0181 | -78 | 5.9 | TTAGCACCGTTCTAATTAGTGTGCTAA |
|
Position: -160
Score: 7.2 Sequence: TTAGCACTCAATTGAAAAAAGTGCTAA
Position: -85
Score: 6.9 Sequence: TTAGCACTTAACAAATAAGAGTGCTAA
Locus tag: LCRIS_00403
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| LCRIS_00403 | -160 | 7.2 | TTAGCACTCAATTGAAAAAAGTGCTAA | |
| -85 | 6.9 | TTAGCACTTAACAAATAAGAGTGCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: groS | ||||
| Ortholog function: Heat shock protein 60 family co-chaperone GroES | ||||
| Lactobacillus acidophilus NCFM | LBA0405 | -159 | 7.6 | TTAGCACTTTTTTATAAAGAGTGCTAA |
| -84 | 6.8 | TTAGCACTTAACTAAAAGGAGTGCTAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_0617 | -62 | 6.4 | TTAGCACTTATGTTAGTCAAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1497 | -140 | 6.5 | TTAGCACTCTCGACTAAAAAGTGCTAT |
| -65 | 6.7 | TTAGCACTTGATCAAGATGAGTGCTAA | ||
| Lactobacillus fermentum IFO 3956 | LAF_0325 | -87 | 5.7 | TTAGCACTTGAGGGGGTTGAGTGCTAG |
| Lactobacillus helveticus DPC 4571 | lhv_0425 | -159 | 6.9 | TTAGCACTATTTGTAAAAAAGTGCTAA |
| -85 | 7.1 | TTAGCACTTAAGAAATAAGAGTGCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_0727 | -51 | 6.4 | TTAGCACTTGAGGTTGAGGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_0342 | -61 | 6.5 | TTAGCACTTGAAGAGTTTGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0358 | -55 | 6.8 | TTAGCACTTGAGTGTTTAGAGTGCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1212 | -135 | 6.4 | TTAGCACTCTAATGTGTCGAGTGATAA |
| -61 | 7 | TTAGCACTCAAGAGTTGAGAGTGCTAA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1763 | -54 | 7.5 | TTAGCACTCACGTTTAAAGAGTGCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0420 | -65 | 6.3 | TTAGCACTTAGAGATGACGAGTGCTAA |
|
Position: -71
Score: 6.8 Sequence: TTAGCACTTGACTACCAAGAGTGCTAA
Locus tag: LCRIS_00649
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| LCRIS_00649 | -71 | 6.8 | TTAGCACTTGACTACCAAGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpL | ||||
| Ortholog function: ATP-dependent Clp protease, ATP-binding subunit | ||||
| Lactobacillus acidophilus NCFM | LBA0638 | -70 | 6.8 | TTAGCACTTGACTACCAAGAGTGCTAA |
| Lactobacillus brevis ATCC 367 | LVIS_1554 | -205 | 6.4 | TTAGCATTCTATTGACGAGAGTGCTAG |
| Lactobacillus casei ATCC 334 | LSEI_1762 | -257 | 5.9 | TTAGCACTCTTAGTGGCAGAGTGCTTG |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0510 | -201 | 6.9 | TTAGCACTTGACTAACTAGAGTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_1388 | -190 | 5.6 | TTAGCATTAGTTGCCAATCAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_0683 | -71 | 6.7 | TTAGCACTTGACTACTAAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0815 | -70 | 7.6 | TTAGCACTCATATATCAAGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_1257 | -211 | 6.9 | TTAGCATTCATGGCTAAAGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_01823 | -128 | 6.2 | TTAGCACTCTTGCGGTTAGAGTGCTTG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0571 | -151 | 7.6 | TTAGCACTCTACTTTAAAGAGTGCTAA |
|
Position: -57
Score: 7 Sequence: TTAGCACTGTACTTGAAAGAGTGCTAA
Locus tag: LCRIS_00696
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| LCRIS_00696 | -57 | 7 | TTAGCACTGTACTTGAAAGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpP | ||||
| Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | ||||
| Lactobacillus acidophilus NCFM | LBA0694 | -59 | 6.1 | TTAGCACAGTACTTGTATGAGTGCTAA |
| Lactobacillus casei ATCC 334 | LSEI_0963 | -51 | 6.9 | TTAGCACTGTACTTTTAAGAGTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0360 | -44 | 5.5 | TTAGCAAACAGTACTAACTAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_0735 | -60 | 6.6 | TTAGCACAGTACTTAAAAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0869 | -49 | 6.9 | TTAGCACTGTACTTATTAGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_0379 | -47 | 5.8 | TTAGCATATAAGACTAACGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_00931 | -54 | 7 | TTAGCACTGTACTTTAAAGAGTGCTAA |
|
Position: -93
Score: 6.2 Sequence: TTAGCAATCTACTTGATTTAGTGCTAA
Position: -45
Score: 6 Sequence: TTAGCACCTGAGAGATGTGAGTGCTAA
Locus tag: LCRIS_01268
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| LCRIS_01268 | -93 | 6.2 | TTAGCAATCTACTTGATTTAGTGCTAA | |
| -45 | 6 | TTAGCACCTGAGAGATGTGAGTGCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hrcA | ||||
| Ortholog function: Heat shock response transcriptional regulator HrcA, HrcA family | ||||
| Lactobacillus acidophilus NCFM | LBA1249 | -93 | 6.1 | TTAGCACTCAGGTTGCATTATTGCTAA |
| -45 | 6.1 | TTAGCACCTGATAGATGTGAGTGCTAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_1331 | -127 | 6.1 | TTAGCACTTAATTACGTTGATTGCTAA |
| -43 | 6.9 | TTAGCACTTGTGTTGTTTGAGTGCTAA | ||
| Lactobacillus casei ATCC 334 | LSEI_1567 | -42 | 7.6 | TTAGCACTCATATAAAACGAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1229 | -92 | 5.7 | TTAGCATTCTCCTTGACTAACTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0749 | -33 | 6.4 | TTAGCACTTAGATGGCCAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ1481 | -91 | 6.4 | TTAGCACTCTACTTGAACAATTGCTAA |
| -43 | 6.3 | TTAGCACAGAAGAAAGAAGAGTGCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_2029 | -191 | 7.1 | TTAGCACTCGTAAGTAAGGAGTGCTAA |
| -36 | 6.7 | TTAGCACTCCATTAAGTTAAGTGCTAA | ||
| Lactobacillus reuteri JCM 1112 | LAR_0677 | -45 | 6.5 | TTAGCACTTGACCCTAATGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_01606 | -42 | 7.6 | TTAGCACTCGTGTAAAACGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1238 | -41 | 7 | TTAGCACTCGTAATAATCAAGTGCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0576 | -41 | 6.6 | TTAGCACTCTAATGTGTTAAGTGCTAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1349 | -110 | 7.4 | TTGGCACTCTTATAAAAAGAGTGCTAA |
| -41 | 6.3 | TTAGCAGTTAGATATAGTGAGTGCTAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0894 | -41 | 6.4 | TTAGCACTCCAACTTTCTAAGTGCTAA |
|
Position: -60
Score: 7.4 Sequence: TTAGCACTCGATAAGCTAGAGTGCTAA
Locus tag: LCRIS_01954
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| LCRIS_01954 | -60 | 7.4 | TTAGCACTCGATAAGCTAGAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpC | ||||
| Ortholog function: ATP-dependent Clp protease ATP-binding subunit ClpA | ||||
| Lactobacillus acidophilus NCFM | LBA1910 | -57 | 6.9 | TTAGCACTCAACGCACTAGAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_2043 | -59 | 5.9 | TTAGCACTTGAAGGCTTTAAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ1775 | -58 | 6.7 | TTAGCACTTATAACTTATGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0207 | -121 | 5.9 | GTGGCACTTTTCTTGCTAGAGTGCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0976 | -122 | 6.9 | TTAGCACTTTACTTAACAGAGTGCTAA |