Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GlnR regulog to Lactobacillus plantarum JDM1

Reference regulog properties
Source regulog: GlnR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum JDM1
Orthologous TF(s) JDM1_1324
Regulated genes 4
Built upon 32 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum JDM1
Locus tag Position Score Sequence
Position: -152
Score: 5
Sequence: GCGTCATAAAACCTGACAT
Position: -46
Score: 6.2
Sequence: ATGTTATAATTCCTAACAT
Locus tag: JDM1_0313
JDM1_0313 -152 5 GCGTCATAAAACCTGACAT
-46 6.2 ATGTTATAATTCCTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Lactobacillus brevis ATCC 367 LVIS_0844 -177 5.3 ATGTCATAAAAATTAACAT
-42 6 GTGTTAGAATTCCTAACAT
Lactobacillus casei ATCC 334 LSEI_0653 -173 4.7 ATGTCACATAAGCTAACGC
Lactobacillus plantarum WCFS1 lp_0349 -46 6.2 ATGTTATAATTTCTAACAT
Lactobacillus rhamnosus GG LGG_00633 -174 5.4 ATGTTATATAAGCTGACGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0235 -94 5.4 ATGTCATAAAAAGTTACAT
-41 5.4 ATGTTATAATTTTTGACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0776 -89 5.3 ATGTAAGAAAAGCTACCAC
Oenococcus oeni PSU-1 OEOE_1679 -62 4.8 TTGTTATATTAGTTAACAC
Position: -54
Score: 5.5
Sequence: ATGTTATATTTTATGACAT
Locus tag: JDM1_0666
JDM1_0666 -54 5.5 ATGTTATATTTTATGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnP
Ortholog function: Glutamine ABC transporter, permease and substrate-binding protein
Lactobacillus plantarum WCFS1 lp_0802 -54 5.5 ATGTTATATTTTATGACAT
Position: -82
Score: 5.4
Sequence: GTGTGATATTTTCTAACAT
Locus tag: JDM1_1324
JDM1_1324 -82 5.4 GTGTGATATTTTCTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Nitrogen metabolism transcriptional regulator, MerR family
Lactobacillus brevis ATCC 367 LVIS_0991 -82 6.3 ATGTCAGAAAACCTAACAT
Lactobacillus casei ATCC 334 LSEI_1653 -79 6 ATGTCAGAAAAGCTTACAT
Lactobacillus plantarum WCFS1 lp_1580 -82 5.4 GTGTGATATTTTCTAACAT
Lactobacillus rhamnosus GG LGG_01697 -79 6 ATGTAAGAAAACCTTACAT
Lactobacillus sakei subsp. sakei 23K LSA1322 -77 6.3 ATGTCAGAAAACCTAACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0557 -83 5.4 GTGTAAGAAAATATTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0716 -80 5.9 ATGTTAGAAAACCTGACAC
Oenococcus oeni PSU-1 OEOE_0951 -67 5.7 ATGTTAGCTTTCCTAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0738 -81 6.2 ATGTTAGAAAATGTAACAT
Position: -44
Score: 5.6
Sequence: ATGTTAGAAGATGTAACAT
Locus tag: JDM1_2272
JDM1_2272 -44 5.6 ATGTTAGAAGATGTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Lactobacillus casei ATCC 334 LSEI_2863 -90 4.9 TTGTCAGACTACCTAACAA
Lactobacillus plantarum WCFS1 lp_2830 -44 5.6 ATGTTAGAAGATATAACAT
Lactobacillus rhamnosus GG LGG_02872 -90 5 TTGTTAGACTAGCTCACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0153 -81 4.9 GTGTCATAAAACTTAACAA
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