Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PerR regulog to Lactobacillus plantarum JDM1

Reference regulog properties
Source regulog: PerR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Manganese homeostasis; Oxidative stress response; Iron homeostasis
Effector: Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum JDM1
Orthologous TF(s) JDM1_0723, JDM1_2607
Regulated genes 6
Built upon 49 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum JDM1
Locus tag Position Score Sequence
Position: -88
Score: 5.6
Sequence: TTAAAATAATTCTAA
Locus tag: JDM1_0318
JDM1_0318 -88 5.6 TTAAAATAATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueO
Ortholog function: Predicted copper oxidase
Lactobacillus casei ATCC 334 LSEI_2417 -192 5.3 TTAGATTAATTCTAA
Lactobacillus plantarum WCFS1 lp_0355 -88 5.6 TTAAAATAATTCTAA
Lactobacillus rhamnosus GG LGG_02415 -72 4.8 TTAGATTAATTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0502 -73 5.3 TTAGATTAATTCTAA
Position: -152
Score: 4.7
Sequence: CTAGAATATTTCTAA
Position: -95
Score: 5.1
Sequence: TTAGAATAATTACAA
Position: -40
Score: 4.9
Sequence: TTAGAACAGTTCTAA
Locus tag: JDM1_2048
JDM1_2048 -152 4.7 CTAGAATATTTCTAA
-95 5.1 TTAGAATAATTACAA
-40 4.9 TTAGAACAGTTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: npr
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus brevis ATCC 367 LVIS_B09 -90 5.9 TTAGAATGATTCTAA
Lactobacillus casei ATCC 334 LSEI_0397 -74 4.7 TTGGAACTATTCTAA
Lactobacillus plantarum WCFS1 lp_2544 -95 5.1 TTAGAATAATTACAA
Lactobacillus rhamnosus GG LGG_00491 -75 5.5 TTGTAATTATTCTAA
Lactobacillus sakei subsp. sakei 23K LSA0575 -61 5 TTGTAATAATTATTA
Position: -37
Score: 6
Sequence: TTATAATGATTCTAA
Locus tag: JDM1_2582
JDM1_2582 -37 6 TTATAATGATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybbL
Ortholog function: Predicted ABC transporter, ATP-binding protein
Lactobacillus plantarum WCFS1 lp_3225 -36 6 TTATAATGATTCTAA
Lactobacillus rhamnosus GG LGG_02565 -35 5 TTAGAATGGTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1684 -38 5.5 TTATAATTTTTCTAA
Position: -79
Score: 5
Sequence: TAGTAATGTTTCTAA
Position: -63
Score: 4.8
Sequence: TTGGAATCCTTCTAA
Locus tag: JDM1_2607
JDM1_2607 -79 5 TAGTAATGTTTCTAA
-63 4.8 TTGGAATCCTTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: perR
Ortholog function: Peroxide stress response transcriptional regulator PerR, Fur family
Lactobacillus brevis ATCC 367 LVIS_1882 -186 5.5 TTAGAATAATTCTTA
Lactobacillus fermentum IFO 3956 LAF_1362 -27 5.6 TTAAAATGATTATAA
Lactobacillus plantarum WCFS1 lp_3247 -79 5 TAGTAATGTTTCTAA
-63 4.8 TTGGAATCCTTCTAA
Lactobacillus reuteri JCM 1112 LAR_1232 -107 5.3 TTAGAATAATTATTA
-31 5.5 TTATAATTATTTTAA
Lactobacillus sakei subsp. sakei 23K LSA0466 -38 4.7 TGATAATGATTATCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1367 -33 4.8 TTATAAAAGTTATAA
Position: -92
Score: 5.4
Sequence: TTAGAATCATTCTTA
Locus tag: JDM1_2669
JDM1_2669 -92 5.4 TTAGAATCATTCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadA
Ortholog function: Predicted cation-transporting ATP-ase
Lactobacillus brevis ATCC 367 LVIS_0392 -52 4.6 CAATAATTGTTATAA
Lactobacillus casei ATCC 334 LSEI_2799 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Lactobacillus plantarum WCFS1 lp_3327 -93 5.4 TTAGAATCATTCTTA
Lactobacillus rhamnosus GG LGG_02803 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Lactobacillus sakei subsp. sakei 23K LSA0969 -65 5.3 TGATAATAATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0169 -93 5.5 TTATAATTTTTCTAA
Position: -37
Score: 5.6
Sequence: TAATAATGATTATAA
Locus tag: JDM1_2694
JDM1_2694 -37 5.6 TAATAATGATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcl2
Ortholog function: Predicted membrane protein
Lactobacillus brevis ATCC 367 LVIS_1881 -98 5.6 TAAGAATTATTCTAA
Lactobacillus fermentum IFO 3956 LAF_1546 -103 5.3 TTAGAATTCTTCTAA
-39 5.7 TTATAATGGTTCTAA
Lactobacillus plantarum WCFS1 lp_3360 -37 5.6 TAATAATGATTATAA
Lactobacillus reuteri JCM 1112 LAR_1418 -102 5.4 TTTTAATGATTCTAA
-38 6 TTATAATGATTCTAA
Lactobacillus sakei subsp. sakei 23K LSA1194 -43 5.6 TTATAATGGTTATAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0409 -38 5.5 TTATAATTTTTCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0043 -37 5.7 TTAAAATGATTCTAA
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