Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Leuconostoc citreum KM20

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Leuconostoc citreum KM20
Orthologous TF(s) LCK_01006, LCK_00483, LCK_01660
Regulated genes 9
Built upon 27 sites [see more]
Predicted regulatory interactions in Leuconostoc citreum KM20
Locus tag Position Score Sequence
Position: -342
Score: 3.4
Sequence: TTTTGTTAAAAAAACTAT
Position: -169
Score: 3.2
Sequence: GATGTCTCATTATTTATA
Position: -159
Score: 3.1
Sequence: TATTTATAATTTTTGCCA
Position: -103
Score: 3.1
Sequence: TTTATGCAATAATATACA
Position: -101
Score: 4.2
Sequence: TATGCAATAATATACAAT
Position: -95
Score: 3.2
Sequence: ATAATATACAATTATTCA
Position: -93
Score: 4.3
Sequence: AATATACAATTATTCAGT
Position: -85
Score: 3.2
Sequence: ATTATTCAGTTATAAAAA
Position: -76
Score: 3.1
Sequence: TTATAAAAAGTATATTTA
Position: -70
Score: 3.1
Sequence: AAAGTATATTTAATGCAT
Position: -63
Score: 3.8
Sequence: ATTTAATGCATATAAACT
Position: -48
Score: 3.2
Sequence: ACTGTATTCATGTATACT
Position: -40
Score: 3.6
Sequence: CATGTATACTATTACTTA
Position: -1
Score: 2.9
Sequence: TATGGACAATTTATTAAC
Locus tag: LCK_00574
LCK_00574 -342 3.4 TTTTGTTAAAAAAACTAT
-169 3.2 GATGTCTCATTATTTATA
-159 3.1 TATTTATAATTTTTGCCA
-103 3.1 TTTATGCAATAATATACA
-101 4.2 TATGCAATAATATACAAT
-95 3.2 ATAATATACAATTATTCA
-93 4.3 AATATACAATTATTCAGT
-85 3.2 ATTATTCAGTTATAAAAA
-76 3.1 TTATAAAAAGTATATTTA
-70 3.1 AAAGTATATTTAATGCAT
-63 3.8 ATTTAATGCATATAAACT
-48 3.2 ACTGTATTCATGTATACT
-40 3.6 CATGTATACTATTACTTA
-1 2.9 TATGGACAATTTATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
Position: -69
Score: 4
Sequence: GTTGCATAAAAATTCAGA
Locus tag: LCK_00601
LCK_00601 -69 4 GTTGCATAAAAATTCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
Position: -45
Score: 3.1
Sequence: AAAGGATTATATTGTTTA
Position: -21
Score: 3.4
Sequence: AAACAATATTGTTAAAAT
Position: 1
Score: 2.9
Sequence: TGACAACAACAAAACTAT
Locus tag: LCK_01168
LCK_01168 -45 3.1 AAAGGATTATATTGTTTA
-21 3.4 AAACAATATTGTTAAAAT
1 2.9 TGACAACAACAAAACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argH
Ortholog function: Argininosuccinate lyase (EC 4.3.2.1)
Lactobacillus casei ATCC 334 LSEI_2812 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1624 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0776 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0703 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02818 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0305 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1458 -73 3.8 ATTGCATATTTAATCAAA
Position: -126
Score: 3.1
Sequence: TTATTGCAAAAATATACA
Position: -124
Score: 4.7
Sequence: ATTGCAAAAATATACATT
Position: -118
Score: 3.4
Sequence: AAAATATACATTTTTATC
Position: -84
Score: 3.5
Sequence: AAAGTGTATATAATCAGT
Position: -82
Score: 2.9
Sequence: AGTGTATATAATCAGTAA
Position: -80
Score: 3.2
Sequence: TGTATATAATCAGTAAGT
Position: -65
Score: 3.1
Sequence: AGTAGTTGAATAAAAAAA
Position: -61
Score: 3.6
Sequence: GTTGAATAAAAAAACGGT
Position: -34
Score: 3.2
Sequence: TATTAATGCATACATAAA
Position: -30
Score: 3.7
Sequence: AATGCATACATAAACACG
Locus tag: LCK_01169
LCK_01169 -126 3.1 TTATTGCAAAAATATACA
-124 4.7 ATTGCAAAAATATACATT
-118 3.4 AAAATATACATTTTTATC
-84 3.5 AAAGTGTATATAATCAGT
-82 2.9 AGTGTATATAATCAGTAA
-80 3.2 TGTATATAATCAGTAAGT
-65 3.1 AGTAGTTGAATAAAAAAA
-61 3.6 GTTGAATAAAAAAACGGT
-34 3.2 TATTAATGCATACATAAA
-30 3.7 AATGCATACATAAACACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
Position: -97
Score: 3.7
Sequence: AATTAATCAATAAATATT
Position: -93
Score: 4.6
Sequence: AATCAATAAATATTCAGC
Position: -74
Score: 3.4
Sequence: CTATTATGAATATTTATT
Position: -70
Score: 3.7
Sequence: TATGAATATTTATTGCAT
Position: -59
Score: 3.8
Sequence: ATTGCATTTAAATACATT
Locus tag: LCK_01671
LCK_01671 -97 3.7 AATTAATCAATAAATATT
-93 4.6 AATCAATAAATATTCAGC
-74 3.4 CTATTATGAATATTTATT
-70 3.7 TATGAATATTTATTGCAT
-59 3.8 ATTGCATTTAAATACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Lactobacillus fermentum IFO 3956 LAF_0726 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0528 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0060 -71 3.4 TTTGCATATTTATTGTAT
Position: -13
Score: 4
Sequence: ACAGGATAATAATATGAT
Position: -2
Score: 3.7
Sequence: ATATGATAAATACACTTG
Locus tag: LCK_01672
LCK_01672 -13 4 ACAGGATAATAATATGAT
-2 3.7 ATATGATAAATACACTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argJ
Ortholog function: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Lactobacillus fermentum IFO 3956 LAF_0725 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0529 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0059 -71 3.4 TTTGCATATTTATTGTAT
Position: 7
Score: 3.4
Sequence: AAAAAATTATCATTAAAA
Locus tag: LCK_01673
LCK_01673 7 3.4 AAAAAATTATCATTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argB
Ortholog function: Acetylglutamate kinase (EC 2.7.2.8)
Lactobacillus fermentum IFO 3956 LAF_0724 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0530 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0058 -71 3.4 TTTGCATATTTATTGTAT
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