Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NagR regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: NagR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_0242
Regulated genes 1
Built upon 49 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -47
Score: 5.1
Sequence: GAATTTATCTATACCAATTT
Locus tag: LAF_0382
LAF_0382 -47 5.1 GAATTTATCTATACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glmS
Ortholog function: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Lactobacillus acidophilus NCFM LBA0462 -28 4.2 ATATTGAACTAGACCAAAGG
Lactobacillus brevis ATCC 367 LVIS_0687 -106 5.1 ATTTCAGTCTATACCAATTT
Lactobacillus casei ATCC 334 LSEI_1019 -159 5.3 AAATTAATATAGACCAATAT
-48 5 AAATCTGTCTAAACCAATTT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0440 -29 4.5 AAATTGAACTAGACCAAAGG
Lactobacillus fermentum IFO 3956 LAF_0382 -47 5.1 GAATTTATCTATACCAATTT
Lactobacillus helveticus DPC 4571 lhv_0491 -131 5.1 AAAATTGATTATACCAATTT
Lactobacillus johnsonii NCC 533 LJ1581 -130 5 CTTTTGATATAGACCAATTA
Lactobacillus reuteri JCM 1112 LAR_0405 -134 4.6 TAAATCATATAGACCAATCT
Lactobacillus rhamnosus GG LGG_00983 -47 4.5 AAACCTGTCTAAACCAATTT
Lactobacillus sakei subsp. sakei 23K LSA1355 -114 5.4 TAATTGAAATATACCAATAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1627 -58 5 ATCAAGGTCTATACCAATTT
Oenococcus oeni PSU-1 OEOE_0635 -113 4.8 TTAATGGCCTATACCAATGT
Pediococcus pentosaceus ATCC 25745 PEPE_0478 -124 5 CATTTGATATATACCGATTT